def _stdViewsButtonClicked(self):
sceneviewer = self._ui.sceneviewer_widget.getSceneviewer()
if sceneviewer is not None:
result, eyePosition, lookatPosition, upVector = sceneviewer.getLookatParameters(
)
upVector = normalize(upVector)
viewVector = sub(lookatPosition, eyePosition)
viewDistance = magnitude(viewVector)
viewVector = normalize(viewVector)
viewX = dot(viewVector, [1.0, 0.0, 0.0])
viewY = dot(viewVector, [0.0, 1.0, 0.0])
viewZ = dot(viewVector, [0.0, 0.0, 1.0])
upX = dot(upVector, [1.0, 0.0, 0.0])
upY = dot(upVector, [0.0, 1.0, 0.0])
upZ = dot(upVector, [0.0, 0.0, 1.0])
if (viewZ < -0.999) and (upY > 0.999):
# XY -> XZ
viewVector = [0.0, 1.0, 0.0]
upVector = [0.0, 0.0, 1.0]
elif (viewY > 0.999) and (upZ > 0.999):
# XZ -> YZ
viewVector = [-1.0, 0.0, 0.0]
upVector = [0.0, 0.0, 1.0]
else:
# XY
viewVector = [0.0, 0.0, -1.0]
upVector = [0.0, 1.0, 0.0]
eyePosition = sub(lookatPosition, mult(viewVector, viewDistance))
sceneviewer.setLookatParametersNonSkew(eyePosition, lookatPosition,
upVector)
def get_bifurcation_triple_point(p1x, p1d, p2x, p2d, p3x, p3d):
'''
Get coordinates and derivatives of triple point between p1, p2 and p3 with derivatives.
:param p1x..p3d: Point coordinates and derivatives, numbered anticlockwise around triple point.
All derivatives point away from triple point.
Returned d1 points from triple point to p2, d2 points from triple point to p3.
:return: x, d1, d2
'''
trx1 = interpolateCubicHermite(p1x, mult(p1d, -2.0), p2x, mult(p2d, 2.0), 0.5)
trx2 = interpolateCubicHermite(p2x, mult(p2d, -2.0), p3x, mult(p3d, 2.0), 0.5)
trx3 = interpolateCubicHermite(p3x, mult(p3d, -2.0), p1x, mult(p1d, 2.0), 0.5)
trx = [ (trx1[c] + trx2[c] + trx3[c])/3.0 for c in range(3) ]
td1 = interpolateLagrangeHermiteDerivative(trx, p1x, p1d, 0.0)
td2 = interpolateLagrangeHermiteDerivative(trx, p2x, p2d, 0.0)
td3 = interpolateLagrangeHermiteDerivative(trx, p3x, p3d, 0.0)
n12 = cross(td1, td2)
n23 = cross(td2, td3)
n31 = cross(td3, td1)
norm = normalize([ (n12[c] + n23[c] + n31[c]) for c in range(3) ])
sd1 = smoothCubicHermiteDerivativesLine([ trx, p1x ], [ normalize(cross(norm, cross(td1, norm))), p1d ], fixStartDirection=True, fixEndDerivative=True)[0]
sd2 = smoothCubicHermiteDerivativesLine([ trx, p2x ], [ normalize(cross(norm, cross(td2, norm))), p2d ], fixStartDirection=True, fixEndDerivative=True)[0]
sd3 = smoothCubicHermiteDerivativesLine([ trx, p3x ], [ normalize(cross(norm, cross(td3, norm))), p3d ], fixStartDirection=True, fixEndDerivative=True)[0]
trd1 = mult(sub(sd2, add(sd3, sd1)), 0.5)
trd2 = mult(sub(sd3, add(sd1, sd2)), 0.5)
return trx, trd1, trd2
def calculateLinePlaneIntersection(pt1, pt2, point_on_plane, plane_normal):
line_direction = sub(pt2, pt1)
d = dot(sub(point_on_plane, pt1), plane_normal) / dot(line_direction, plane_normal)
intersection_point = add(mult(line_direction, d), pt1)
if abs(dot(sub(point_on_plane, intersection_point), plane_normal)) < 1e-08:
return intersection_point
return None
def calculateLinePlaneIntersection(pt1, pt2, point_on_plane, plane_normal):
line_direction = sub(pt2, pt1)
d = dot(sub(point_on_plane, pt1), plane_normal) / dot(
line_direction, plane_normal)
intersection_point = add(mult(line_direction, d), pt1)
if abs(dot(sub(point_on_plane, intersection_point), plane_normal)) < 1e-08:
return intersection_point
return None
def _createNodeTree(self, generation, x1, d1, r, forkNormal):
'''
Create node with specified x1, d1, r and recursively add two child nodes until generationCount.
:param forkNormal: Unit direction normal to d1 and child branches.
:return: Top node of tree.
'''
node = TreeNode(x1, d1, r)
if generation < self._generationCount:
branchLength = magnitude(d1) * self._branchLengthRatio
main = mult(d1, self._cosForkAngle * self._branchLengthRatio)
side = mult(cross(forkNormal, d1),
self._sinForkAngle * self._branchLengthRatio)
branch1d1 = add(main, side)
branch2d1 = sub(main, side)
if self._branchArcRadians > 0.0:
arcr = branchLength / self._branchArcRadians
arc2 = mult(branch1d1, arcr / branchLength)
arc1 = cross(arc2, forkNormal)
arcc = sub(x1, arc1)
branch1x2 = add(
arcc,
add(mult(arc1, self._cosBranchArc),
mult(arc2, self._sinBranchArc)))
branch1d2 = mult(
add(mult(arc1, -self._sinBranchArc),
mult(arc2, self._cosBranchArc)), branchLength / arcr)
arc2 = mult(branch2d1, arcr / branchLength)
arc1 = cross(forkNormal, arc2)
arcc = sub(x1, arc1)
branch2x2 = add(
arcc,
add(mult(arc1, self._cosBranchArc),
mult(arc2, self._sinBranchArc)))
branch2d2 = mult(
add(mult(arc1, -self._sinBranchArc),
mult(arc2, self._cosBranchArc)), branchLength / arcr)
else:
branch1x2 = add(x1, branch1d1)
branch1d2 = branch1d1
branch2x2 = add(x1, branch2d1)
branch2d2 = branch2d1
branch1Normal = normalize(cross(forkNormal, branch1d2))
branch2Normal = normalize(cross(forkNormal, branch2d2))
forkRadius = r * self._forkRadiusRatio
node.addChild(
self._createNodeTree(generation + 1, branch1x2, branch1d2,
forkRadius * self._branchRadiusRatio,
branch1Normal), branch1d1, forkRadius)
node.addChild(
self._createNodeTree(generation + 1, branch2x2, branch2d2,
forkRadius * self._branchRadiusRatio,
branch2Normal), branch2d1, forkRadius)
return node
def mouseMoveEvent(self, event):
if self._lastMousePos is not None:
pos = [event.x(), event.y()]
delta = [pos[0] - self._lastMousePos[0], pos[1] - self._lastMousePos[1]]
result, eye = self._sceneviewer.getEyePosition()
result, lookat = self._sceneviewer.getLookatPosition()
result, up = self._sceneviewer.getUpVector()
lookatToEye = vectorops.sub(eye, lookat)
eyeDistance = vectorops.magnitude(lookatToEye)
front = vectorops.div(lookatToEye, eyeDistance)
right = vectorops.cross(up, front)
if self._active_button == QtCore.Qt.LeftButton:
mag = vectorops.magnitude(delta)
prop = vectorops.div(delta, mag)
axis = vectorops.add(vectorops.mult(up, prop[0]), vectorops.mult(right, prop[1]))
angle = mag*0.002
self._model.rotateModel(axis, angle)
elif self._active_button == QtCore.Qt.MiddleButton:
result, l, r, b, t, near, far = self._sceneviewer.getViewingVolume()
viewportWidth = self.width()
viewportHeight = self.height()
if viewportWidth > viewportHeight:
eyeScale = (t - b) / viewportHeight
else:
eyeScale = (r - l) / viewportWidth
offset = vectorops.add(vectorops.mult(right, eyeScale*delta[0]), vectorops.mult(up, -eyeScale*delta[1]))
self._model.offsetModel(offset)
elif self._active_button == QtCore.Qt.RightButton:
factor = 1.0 + delta[1]*0.0005
if factor < 0.9:
factor = 0.9
self._model.scaleModel(factor)
self._lastMousePos = pos
else:
super(AlignmentSceneviewerWidget, self).mouseMoveEvent(event)
def get_curve_circle_points(x1, xd1, x2, xd2, r1, rd1, r2, rd2, xi, dmag, side, elementsCountAround):
'''
:param dmag: Magnitude of derivative on curve.
:param side: Vector in side direction of first node around.
Need not be unit or exactly normal to curve at xi.
:return: x[], d1[] around, d2[] along
'''
cx = interpolateCubicHermite(x1, xd1, x2, xd2, xi)
cxd = interpolateCubicHermiteDerivative(x1, xd1, x2, xd2, xi)
mag_cxd = magnitude(cxd)
cxd2 = interpolateCubicHermiteSecondDerivative(x1, xd1, x2, xd2, xi)
mag_cxd2 = magnitude(cxd2)
r = interpolateCubicHermite([ r1 ], [ rd1 ], [ r2 ], [ rd2 ], xi)[0]
rd = interpolateCubicHermiteDerivative([ r1 ], [ rd1 ], [ r2 ], [ rd2 ], xi)[0]
axis1 = normalize(cxd)
axis3 = normalize(cross(axis1, side))
axis2 = cross(axis3, axis1)
x, d1 = createCirclePoints(cx, mult(axis2, r), mult(axis3, r), elementsCountAround)
curvatureVector = mult(cxd2, 1.0/(mag_cxd*mag_cxd))
d2 = []
radialGrowth = rd/(mag_cxd*r)
for e in range(elementsCountAround):
radialVector = sub(x[e], cx)
dmagFinal = dmag*(1.0 - dot(radialVector, curvatureVector))
# add curvature and radius change components:
d2.append(add(mult(cxd, dmagFinal/mag_cxd), mult(radialVector, dmagFinal*radialGrowth)))
return x, d1, d2
def _imageButtonClicked(self):
sceneviewer = self._ui.sceneviewer_widget.getSceneviewer()
normal, up, offset = self._plane_model.getPlaneInfo()
_, current_lookat_pos = sceneviewer.getLookatPosition()
_, current_eye_pos = sceneviewer.getEyePosition()
view_distance = vectorops.magnitude(vectorops.sub(current_eye_pos, current_lookat_pos))
eye_pos = vectorops.add(vectorops.mult(normal, view_distance), offset)
lookat_pos = offset
sceneviewer.setLookatParametersNonSkew(eye_pos, lookat_pos, up)
def extractImageCorners(directory, filename):
"""
Extract the image corners from an image that is assumed to be
a DICOM image.
Corners are returned as:
[bl, br, tl, tr]
:param directory: the directory where the file given with filename exists.
:param filename: the filename of the file to interrogate.
:return: the corners of the image [bl, br, tl, tr]
"""
ds = dicom.read_file(os.path.join(directory, filename))
pixel_spacing = ds.PixelSpacing
# delta_i = float(0.1)
# delta_j = float(0.1)
delta_i = float(pixel_spacing[0])
delta_j = float(pixel_spacing[1])
orient = [float(iop) for iop in ds.ImageOrientationPatient]
pos = [float(ipp) for ipp in ds.ImagePositionPatient]
rows = ds.Rows
columns = ds.Columns
# vectorops version
orient_1 = orient[:3]
orient_2 = orient[3:]
pos_o = pos[:]
pos = vectorops.sub(
pos_o,
vectorops.mult(
vectorops.add(vectorops.mult(orient_1, 0.5),
vectorops.mult(orient_2, 0.5)), delta_i))
A = [[orient[0] * delta_i, orient[3] * delta_j, 0, pos[0]],
[orient[1] * delta_i, orient[4] * delta_j, 0, pos[1]],
[orient[2] * delta_i, orient[5] * delta_j, 0, pos[2]], [0, 0, 0, 1]]
b_tl = [0, 0, 0, 1]
b_tr = [rows, 0, 0, 1]
b_bl = [0, columns, 0, 1]
b_br = [rows, columns, 0, 1]
tl = vectorops.mxvectormult(A, b_tl)
tr = vectorops.mxvectormult(A, b_tr)
bl = vectorops.mxvectormult(A, b_bl)
br = vectorops.mxvectormult(A, b_br)
return [bl[:3], br[:3], tl[:3], tr[:3]]
def mouseMoveEvent(self, event):
if self._model.isStateAlign() and self._alignKeyPressed and (
self._lastMousePos is not None):
pos = [event.x(), event.y()]
delta = [
pos[0] - self._lastMousePos[0], pos[1] - self._lastMousePos[1]
]
result, eye = self._sceneviewer.getEyePosition()
result, lookat = self._sceneviewer.getLookatPosition()
result, up = self._sceneviewer.getUpVector()
lookatToEye = vectorops.sub(eye, lookat)
eyeDistance = vectorops.magnitude(lookatToEye)
front = vectorops.div(lookatToEye, eyeDistance)
right = vectorops.cross(up, front)
if self._active_button == QtCore.Qt.LeftButton:
mag = vectorops.magnitude(delta)
prop = vectorops.div(delta, mag)
axis = vectorops.add(vectorops.mult(up, prop[0]),
vectorops.mult(right, prop[1]))
angle = mag * 0.002
self._model.rotateModel(axis, angle)
elif self._active_button == QtCore.Qt.MiddleButton:
result, l, r, b, t, near, far = self._sceneviewer.getViewingVolume(
)
viewportWidth = self.width()
viewportHeight = self.height()
if viewportWidth > viewportHeight:
eyeScale = (t - b) / viewportHeight
else:
eyeScale = (r - l) / viewportWidth
offset = vectorops.add(
vectorops.mult(right, eyeScale * delta[0]),
vectorops.mult(up, -eyeScale * delta[1]))
self._model.offsetModel(offset)
elif self._active_button == QtCore.Qt.RightButton:
factor = 1.0 + delta[1] * 0.0005
if factor < 0.9:
factor = 0.9
self._model.scaleModel(factor)
self._lastMousePos = pos
else:
super(AlignmentSceneviewerWidget, self).mouseMoveEvent(event)
def extractImageCorners(directory, filename):
"""
Extract the image corners from an image that is assumed to be
a DICOM image.
Corners are returned as:
[bl, br, tl, tr]
:param directory: the directory where the file given with filename exists.
:param filename: the filename of the file to interrogate.
:return: the corners of the image [bl, br, tl, tr]
"""
ds = dicom.read_file(os.path.join(directory, filename))
pixel_spacing = ds.PixelSpacing
# delta_i = float(0.1)
# delta_j = float(0.1)
delta_i = float(pixel_spacing[0])
delta_j = float(pixel_spacing[1])
orient = [float(iop) for iop in ds.ImageOrientationPatient]
pos = [float(ipp) for ipp in ds.ImagePositionPatient]
rows = ds.Rows
columns = ds.Columns
# vectorops version
orient_1 = orient[:3]
orient_2 = orient[3:]
pos_o = pos[:]
pos = vectorops.sub(pos_o, vectorops.mult(vectorops.add(vectorops.mult(orient_1, 0.5),
vectorops.mult(orient_2, 0.5)), delta_i))
A = [[orient[0]*delta_i, orient[3]*delta_j, 0, pos[0]],
[orient[1]*delta_i, orient[4]*delta_j, 0, pos[1]],
[orient[2]*delta_i, orient[5]*delta_j, 0, pos[2]],
[ 0, 0, 0, 1]]
b_tl = [0, 0, 0, 1]
b_tr = [rows, 0, 0, 1]
b_bl = [0, columns, 0, 1]
b_br = [rows, columns, 0, 1]
tl = vectorops.mxvectormult(A, b_tl)
tr = vectorops.mxvectormult(A, b_tr)
bl = vectorops.mxvectormult(A, b_bl)
br = vectorops.mxvectormult(A, b_br)
return [bl[:3], br[:3], tl[:3], tr[:3]]
def calculateGroupDataProjections(
self, fieldcache, group, dataGroup, meshGroup, meshLocation,
activeFitterStepConfig: FitterStepConfig):
"""
Project data points for group. Assumes called while ChangeManager is active for fieldmodule.
:param group: The FieldGroup being fitted (parent of dataGroup, meshGroup).
:param dataGroup: Nodeset group containing data points to project.
:param meshGroup: MeshGroup containing surfaces/lines to project onto.
:param meshLocation: FieldStoredMeshLocation to store found location in.
:param activeFitterStepConfig: Where to get current projection modes from.
"""
groupName = group.getName()
dimension = meshGroup.getDimension()
dataProjectionNodesetGroup = self._dataProjectionNodesetGroups[
dimension - 1]
sizeBefore = dataProjectionNodesetGroup.getSize()
dataCoordinates = self._dataCoordinatesField
if activeFitterStepConfig.isProjectionCentreGroups():
# get geometric centre of dataGroup
dataCentreField = self._fieldmodule.createFieldNodesetMean(
dataCoordinates, dataGroup)
result, dataCentre = dataCentreField.evaluateReal(
fieldcache, dataCoordinates.getNumberOfComponents())
if result != RESULT_OK:
print(
"Error: Centre Groups projection failed to get mean coordinates of data for group "
+ groupName)
return
#print("Centre Groups dataCentre", dataCentre)
# get geometric centre of meshGroup
meshGroupCoordinatesIntegral = self._fieldmodule.createFieldMeshIntegral(
self._modelCoordinatesField, self._modelCoordinatesField,
meshGroup)
meshGroupCoordinatesIntegral.setNumbersOfPoints([3])
meshGroupArea = self._fieldmodule.createFieldMeshIntegral(
self._fieldmodule.createFieldConstant([1.0]),
self._modelCoordinatesField, meshGroup)
meshGroupArea.setNumbersOfPoints([3])
result1, coordinatesIntegral = meshGroupCoordinatesIntegral.evaluateReal(
fieldcache,
self._modelCoordinatesField.getNumberOfComponents())
result2, area = meshGroupArea.evaluateReal(fieldcache, 1)
if (result1 != RESULT_OK) or (result2 != RESULT_OK) or (area <=
0.0):
print(
"Error: Centre Groups projection failed to get mean coordinates of mesh for group "
+ groupName)
return
meshCentre = [s / area for s in coordinatesIntegral]
#print("Centre Groups meshCentre", meshCentre)
# offset dataCoordinates to make dataCentre coincide with meshCentre
dataCoordinates = dataCoordinates + self._fieldmodule.createFieldConstant(
sub(meshCentre, dataCentre))
findMeshLocation = self._fieldmodule.createFieldFindMeshLocation(
dataCoordinates, self._modelCoordinatesField, meshGroup)
findMeshLocation.setSearchMode(
FieldFindMeshLocation.SEARCH_MODE_NEAREST)
nodeIter = dataGroup.createNodeiterator()
node = nodeIter.next()
while node.isValid():
fieldcache.setNode(node)
element, xi = findMeshLocation.evaluateMeshLocation(
fieldcache, dimension)
if element.isValid():
result = meshLocation.assignMeshLocation(
fieldcache, element, xi)
#print(result, "node", node.getIdentifier(), "element", element.getIdentifier(), "xi", xi)
#if result != RESULT_OK:
# mesh = meshLocation.getMesh()
# print("--> mesh", mesh.isValid(), mesh.getDimension(), findMeshLocation.getMesh().getDimension())
# print("node", node.getIdentifier(), "is defined", meshLocation.isDefinedAtLocation(fieldcache))
assert result == RESULT_OK, "Error: Failed to assign data projection mesh location for group " + groupName
dataProjectionNodesetGroup.addNode(node)
node = nodeIter.next()
pointsProjected = dataProjectionNodesetGroup.getSize() - sizeBefore
if pointsProjected < dataGroup.getSize():
if self.getDiagnosticLevel() > 0:
print("Warning: Only " + str(pointsProjected) + " of " +
str(dataGroup.getSize()) +
" data points projected for group " + groupName)
return
def calculatePlaneNormal(pt1, pt2, pt3):
dir_1 = sub(pt2, pt1)
dir_2 = sub(pt3, pt1)
cross_vec = cross(dir_1, dir_2)
return normalize(cross_vec)
def generateBaseMesh(cls, region, options):
"""
Generate the base bicubic Hermite mesh.
:param region: Zinc region to define model in. Must be empty.
:param options: Dict containing options. See getDefaultOptions().
:return: list of AnnotationGroup
"""
paCount = options['Number of elements around parent']
c1Count = options['Number of elements around child 1']
c2Count = options['Number of elements around child 2']
parentRadius = 0.5 * options['Parent diameter']
parentLength = options['Parent length']
parentLengthScaleFactor = options['Parent length scale factor']
child1AngleRadians = math.radians(options['Child 1 angle degrees'])
child1Radius = 0.5 * options['Child 1 diameter']
child1Length = options['Child 1 length']
child1LengthScaleFactor = options['Child 1 length scale factor']
child2AngleRadians = math.radians(options['Child 2 angle degrees'])
child2Radius = 0.5 * options['Child 2 diameter']
child2Length = options['Child 2 length']
child2LengthScaleFactor = options['Child 2 length scale factor']
useCrossDerivatives = False
# centres:
paCentre = [0.0, 0.0, -parentLength]
c1Centre = [
child1Length * math.sin(child1AngleRadians), 0.0,
child1Length * math.cos(child1AngleRadians)
]
c2Centre = [
child2Length * math.sin(child2AngleRadians), 0.0,
child2Length * math.cos(child2AngleRadians)
]
c12 = sub(c1Centre, c2Centre)
pac1Count, pac2Count, c1c2Count = get_tube_bifurcation_connection_elements_counts(
paCount, c1Count, c2Count)
# parent ring
paAxis3 = [0.0, 0.0, parentLength]
paAxis2 = mult(normalize(cross(paAxis3, c12)), parentRadius)
paAxis1 = mult(normalize(cross(paAxis2, paAxis3)), parentRadius)
paStartRadians = -math.pi * (pac1Count / paCount)
pax, pad1 = createCirclePoints(paCentre, paAxis1, paAxis2, paCount,
paStartRadians)
pad2 = [mult(paAxis3, parentLengthScaleFactor)] * paCount
# child 1 ring
c1Axis3 = c1Centre
c1Axis2 = mult(normalize(cross(c1Axis3, c12)), child1Radius)
c1Axis1 = mult(normalize(cross(c1Axis2, c1Axis3)), child1Radius)
c1StartRadians = -math.pi * (pac1Count / c1Count)
c1x, c1d1 = createCirclePoints(c1Centre, c1Axis1, c1Axis2, c1Count,
c1StartRadians)
c1d2 = [mult(c1Axis3, child1LengthScaleFactor)] * c1Count
# child 2 ring
c2Axis3 = c2Centre
c2Axis2 = mult(normalize(cross(c2Axis3, c12)), child2Radius)
c2Axis1 = mult(normalize(cross(c2Axis2, c2Axis3)), child2Radius)
c2StartRadians = -math.pi * (c1c2Count / c2Count)
c2x, c2d1 = createCirclePoints(c2Centre, c2Axis1, c2Axis2, c2Count,
c2StartRadians)
c2d2 = [mult(c2Axis3, child2LengthScaleFactor)] * c2Count
rox, rod1, rod2, cox, cod1, cod2, paStartIndex, c1StartIndex, c2StartIndex = \
make_tube_bifurcation_points(paCentre, pax, pad2, c1Centre, c1x, c1d2, c2Centre, c2x, c2d2)
fm = region.getFieldmodule()
coordinates = findOrCreateFieldCoordinates(fm)
cache = fm.createFieldcache()
nodes = fm.findNodesetByFieldDomainType(Field.DOMAIN_TYPE_NODES)
##############
# Create nodes
##############
nodeIdentifier = 1
nodetemplate = nodes.createNodetemplate()
nodetemplate.defineField(coordinates)
nodetemplate.setValueNumberOfVersions(coordinates, -1,
Node.VALUE_LABEL_VALUE, 1)
nodetemplate.setValueNumberOfVersions(coordinates, -1,
Node.VALUE_LABEL_D_DS1, 1)
nodetemplate.setValueNumberOfVersions(coordinates, -1,
Node.VALUE_LABEL_D_DS2, 1)
paNodeId = []
for n in range(paCount):
node = nodes.createNode(nodeIdentifier, nodetemplate)
cache.setNode(node)
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_VALUE, 1,
pax[n])
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_D_DS1, 1,
pad1[n])
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_D_DS2, 1,
pad2[n])
paNodeId.append(nodeIdentifier)
nodeIdentifier = nodeIdentifier + 1
roNodeId = []
for n in range(len(rox)):
node = nodes.createNode(nodeIdentifier, nodetemplate)
cache.setNode(node)
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_VALUE, 1,
rox[n])
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_D_DS1, 1,
rod1[n])
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_D_DS2, 1,
rod2[n])
roNodeId.append(nodeIdentifier)
nodeIdentifier = nodeIdentifier + 1
coNodeId = []
for n in range(len(cox)):
node = nodes.createNode(nodeIdentifier, nodetemplate)
cache.setNode(node)
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_VALUE, 1,
cox[n])
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_D_DS1, 1,
cod1[n])
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_D_DS2, 1,
cod2[n])
coNodeId.append(nodeIdentifier)
nodeIdentifier = nodeIdentifier + 1
c1NodeId = []
for n in range(c1Count):
node = nodes.createNode(nodeIdentifier, nodetemplate)
cache.setNode(node)
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_VALUE, 1,
c1x[n])
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_D_DS1, 1,
c1d1[n])
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_D_DS2, 1,
c1d2[n])
c1NodeId.append(nodeIdentifier)
nodeIdentifier = nodeIdentifier + 1
c2NodeId = []
for n in range(c2Count):
node = nodes.createNode(nodeIdentifier, nodetemplate)
cache.setNode(node)
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_VALUE, 1,
c2x[n])
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_D_DS1, 1,
c2d1[n])
coordinates.setNodeParameters(cache, -1, Node.VALUE_LABEL_D_DS2, 1,
c2d2[n])
c2NodeId.append(nodeIdentifier)
nodeIdentifier = nodeIdentifier + 1
#################
# Create elements
#################
elementIdentifier = 1
elementIdentifier = make_tube_bifurcation_elements_2d(
region, coordinates, elementIdentifier, paNodeId, paStartIndex,
c1NodeId, c1StartIndex, c2NodeId, c2StartIndex, roNodeId, coNodeId,
useCrossDerivatives)
return []
def mouseMoveEvent(self, event):
if self._editNode:
mousePos = [event.x(), event.y()]
nodeset = self._editNode.getNodeset()
fieldmodule = nodeset.getFieldmodule()
with ChangeManager(fieldmodule):
meshEditsNodeset = self._model.getOrCreateMeshEditsNodesetGroup(
nodeset)
meshEditsNodeset.addNode(self._editNode)
editCoordinateField = coordinateField = self._editGraphics.getCoordinateField(
)
localScene = self._editGraphics.getScene(
) # need set local scene to get correct transformation
if coordinateField.getCoordinateSystemType(
) != Field.COORDINATE_SYSTEM_TYPE_RECTANGULAR_CARTESIAN:
editCoordinateField = fieldmodule.createFieldCoordinateTransformation(
coordinateField)
editCoordinateField.setCoordinateSystemType(
Field.COORDINATE_SYSTEM_TYPE_RECTANGULAR_CARTESIAN)
fieldcache = fieldmodule.createFieldcache()
fieldcache.setNode(self._editNode)
componentsCount = coordinateField.getNumberOfComponents()
result, initialCoordinates = editCoordinateField.evaluateReal(
fieldcache, componentsCount)
if result == RESULT_OK:
for c in range(componentsCount, 3):
initialCoordinates.append(0.0)
pointattr = self._editGraphics.getGraphicspointattributes()
editVectorField = vectorField = pointattr.getOrientationScaleField(
)
pointBaseSize = pointattr.getBaseSize(3)[1][0]
pointScaleFactor = pointattr.getScaleFactors(3)[1][0]
if editVectorField.isValid() and (vectorField.getNumberOfComponents() == componentsCount) \
and (pointBaseSize == 0.0) and (pointScaleFactor != 0.0):
if vectorField.getCoordinateSystemType(
) != Field.COORDINATE_SYSTEM_TYPE_RECTANGULAR_CARTESIAN:
editVectorField = fieldmodule.createFieldCoordinateTransformation(
vectorField, coordinateField)
editVectorField.setCoordinateSystemType(
Field.
COORDINATE_SYSTEM_TYPE_RECTANGULAR_CARTESIAN)
result, initialVector = editVectorField.evaluateReal(
fieldcache, componentsCount)
for c in range(componentsCount, 3):
initialVector.append(0.0)
initialTipCoordinates = [
(initialCoordinates[c] +
initialVector[c] * pointScaleFactor)
for c in range(3)
]
windowCoordinates = self.projectLocal(
initialTipCoordinates[0], initialTipCoordinates[1],
initialTipCoordinates[2], localScene)
finalTipCoordinates = self.unprojectLocal(
mousePos[0], -mousePos[1], windowCoordinates[2],
localScene)
finalVector = [
(finalTipCoordinates[c] - initialCoordinates[c]) /
pointScaleFactor for c in range(3)
]
result = editVectorField.assignReal(
fieldcache, finalVector)
else:
windowCoordinates = self.projectLocal(
initialCoordinates[0], initialCoordinates[1],
initialCoordinates[2], localScene)
xa = self.unprojectLocal(self._lastMousePos[0],
-self._lastMousePos[1],
windowCoordinates[2],
localScene)
xb = self.unprojectLocal(mousePos[0], -mousePos[1],
windowCoordinates[2],
localScene)
finalCoordinates = [
(initialCoordinates[c] + xb[c] - xa[c])
for c in range(3)
]
result = editCoordinateField.assignReal(
fieldcache, finalCoordinates)
del editVectorField
del editCoordinateField
del fieldcache
self._lastMousePos = mousePos
event.accept()
return
if self._alignMode != self.AlignMode.NONE:
mousePos = [event.x(), event.y()]
delta = [
mousePos[0] - self._lastMousePos[0],
mousePos[1] - self._lastMousePos[1]
]
result, eye = self._sceneviewer.getEyePosition()
result, lookat = self._sceneviewer.getLookatPosition()
result, up = self._sceneviewer.getUpVector()
lookatToEye = sub(eye, lookat)
eyeDistance = magnitude(lookatToEye)
front = div(lookatToEye, eyeDistance)
right = cross(up, front)
if self._alignMode == self.AlignMode.ROTATION:
mag = magnitude(delta)
prop = div(delta, mag)
axis = add(mult(up, prop[0]), mult(right, prop[1]))
angle = mag * 0.002
#print('delta', delta, 'axis', axis, 'angle', angle)
self._model.interactionRotate(axis, angle)
elif self._alignMode == self.AlignMode.SCALE:
factor = 1.0 + delta[1] * 0.0005
if factor < 0.9:
factor = 0.9
self._model.interactionScale(factor)
elif self._alignMode == self.AlignMode.TRANSLATION:
result, l, r, b, t, near, far = self._sceneviewer.getViewingVolume(
)
viewportWidth = self.width()
viewportHeight = self.height()
if viewportWidth > viewportHeight:
eyeScale = (t - b) / viewportHeight
else:
eyeScale = (r - l) / viewportWidth
offset = add(mult(right, eyeScale * delta[0]),
mult(up, -eyeScale * delta[1]))
self._model.interactionTranslate(offset)
self._lastMousePos = mousePos
event.accept()
return
else:
super(NodeEditorSceneviewerWidget, self).mouseMoveEvent(event)
def calculatePlaneNormal(pt1, pt2, pt3):
dir_1 = sub(pt2, pt1)
dir_2 = sub(pt3, pt1)
cross_vec = cross(dir_1, dir_2)
return normalize(cross_vec)
def _get_auto_point_size(self):
minimums, maximums = self._get_data_range()
data_size = maths.magnitude(maths.sub(maximums, minimums))
return 0.25 * data_size
