Python SuperTreeInputTrees примеры использования

Пример #1

Файл: sInputTreesWithDist.py Проект: pgfoster/p4-phylogenetics

from p4.supertreesupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtreesWithDist.tre'
stit.useTaxonDistribution = True 
stit.noOutputTrees = 20
stit.generateInputTrees()

Пример #2

from p4.supertreesupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtreesWithDist.tre'
stit.useTaxonDistribution = True
stit.noOutputTrees = 20
stit.generateInputTrees()

Пример #3

Файл: sInputTreesBuildDist.py Проект: pgfoster/p4-phylogenetics

from p4.supertreesupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex', distributionTrees='FelidaeRVS.tre')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtreesBuiltDist.tre'
stit.noOutputTrees = 20
stit.generateInputTrees()

Пример #4

Файл: sInputTreesBuildDist.py Проект: pgfoster/p4-phylogenetics

from p4.supertreesupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex',
                           distributionTrees='FelidaeRVS.tre')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtreesBuiltDist.tre'
stit.noOutputTrees = 20
stit.generateInputTrees()

Пример #5

Файл: sInputTrees.py Проект: pgfoster/p4-phylogenetics

from p4.supertreesupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtrees.tre'
stit.noTaxaToRemove = 32
stit.noOutputTrees = 20
stit.generateInputTrees()