Python SuperTreeInputTrees示例

示例#1

文件： sInputTreesWithDist.py 项目： pgfoster/p4-phylogenetics

from p4.supertreesupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtreesWithDist.tre'
stit.useTaxonDistribution = True 
stit.noOutputTrees = 20
stit.generateInputTrees()

示例#2

from p4.supertreesupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtreesWithDist.tre'
stit.useTaxonDistribution = True
stit.noOutputTrees = 20
stit.generateInputTrees()

示例#3

文件： sInputTreesBuildDist.py 项目： pgfoster/p4-phylogenetics

from p4.supertreesupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex', distributionTrees='FelidaeRVS.tre')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtreesBuiltDist.tre'
stit.noOutputTrees = 20
stit.generateInputTrees()

示例#4

文件： sInputTreesBuildDist.py 项目： pgfoster/p4-phylogenetics

from p4.supertreesupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex',
                           distributionTrees='FelidaeRVS.tre')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtreesBuiltDist.tre'
stit.noOutputTrees = 20
stit.generateInputTrees()

示例#5

文件： sInputTrees.py 项目： pgfoster/p4-phylogenetics

from p4.supertreesupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtrees.tre'
stit.noTaxaToRemove = 32
stit.noOutputTrees = 20
stit.generateInputTrees()