def setUp(self):
"""docstring for setup"""
print "Running setUp speedtest"
user1 = User.objects.create()
user1.set_password('f')
user1.username = '******'
user1.save()
self.user1 = user1
self.man1 = Manufacturer.objects.create(name='MZTech')
self.inst1 = Instrument.objects.create(
name='HiLine-Pro',
description='MS/MS Spectrometer',
manufacturer=self.man1)
self.uniprot = ExternalDb.objects.create(
db_name='UniProt', url_stump='http://www.uniprot.org/uniprot/')
bi1 = BackgroundImports()
cl = bi1.get_cell_line(MDIC)
bi1.insert_alleles(MDIC, cl_obj=cl)
bi1.insert_update_antibodies(MDIC)
bi1.create_experiment(MDIC, cl)
#self.filepath = os.path.join( CURDIR, 'scripts/Time_Trial_Import4_PeptideSummary.trial' )
self.filepath = os.path.join(CURDIR, 'scripts/sample_large_ss.csv')
#self.filepath = os.path.join( CURDIR, 'scripts/twentyk_trial.csv' )
self.BGFILE = os.path.join(
CURDIR, '../../background/newdata_with_files_correct.csv')
self.bi1 = bi1
def tearDown(self):
self.bi1 = None
def setUp(self):
"""docstring for setup"""
print "Running setUp bulk"
user1 = User.objects.create( )
user1.set_password( 'f' )
user1.username = '******'
user1.save()
self.user1 = user1
self.man1 = Manufacturer.objects.create( name = 'MZTech' )
self.inst1 = Instrument.objects.create( name = 'HiLine-Pro', description = 'MS/MS Spectrometer', manufacturer = self.man1 )
self.uniprot = ExternalDb.objects.create( db_name = 'UniProt', url_stump = 'http://www.uniprot.org/uniprot/')
bi1 = BackgroundImports()
cl = bi1.get_cell_line( MDIC )
bi1.insert_alleles( MDIC, cl_obj = cl )
bi1.insert_update_antibodies( MDIC )
bi1.create_experiment( MDIC, cl )
self.bi1 = bi1
def setUp(self):
"""docstring for setup"""
print "Running setUp bulk"
user1 = User.objects.create()
user1.set_password('f')
user1.username = '******'
user1.save()
self.user1 = user1
self.man1 = Manufacturer.objects.create(name='MZTech')
self.inst1 = Instrument.objects.create(
name='HiLine-Pro',
description='MS/MS Spectrometer',
manufacturer=self.man1)
self.uniprot = ExternalDb.objects.create(
db_name='UniProt', url_stump='http://www.uniprot.org/uniprot/')
bi1 = BackgroundImports()
cl = bi1.get_cell_line(MDIC)
bi1.insert_alleles(MDIC, cl_obj=cl)
bi1.insert_update_antibodies(MDIC)
bi1.create_experiment(MDIC, cl)
self.bi1 = bi1
def setUp(self):
"""docstring for setup"""
user1 = User.objects.create( )
user1.set_password( 'f' )
user1.username = '******'
user1.save()
self.user1 = user1
self.man1 = Manufacturer.objects.create( name = 'MZTech' )
self.inst1 = Instrument.objects.create( name = 'HiLine-Pro', description = 'MS/MS Spectrometer', manufacturer = self.man1 )
self.uniprot = ExternalDb.objects.create( db_name = 'UniProt', url_stump = 'http://www.uniprot.org/uniprot/')
bi1 = BackgroundImports()
cl = bi1.get_cell_line( MDIC )
bi1.insert_alleles( MDIC, cl_obj = cl )
bi1.insert_update_antibodies( MDIC )
bi1.create_experiment( MDIC, cl )
#self.filepath = os.path.join( CURDIR, 'scripts/Time_Trial_Import4_PeptideSummary.trial' )
self.filepath = os.path.join( CURDIR, 'scripts/sample_large_ss.csv' )
#self.filepath = os.path.join( CURDIR, 'scripts/twentyk_trial.csv' )
self.BGFILE = os.path.join( CURDIR, '../../background/newdata_with_files_correct.csv' )
self.bi1 = bi1
def setUp(self):
print "Running setUp bulk"
user1 = User.objects.create( )
user1.set_password( 'f' )
user1.username = '******'
user1.save()
self.user1 = user1
self.man1 = Manufacturer.objects.create( name = 'MZTech' )
self.inst1 = Instrument.objects.create( name = 'HiLine-Pro', description = 'MS/MS Spectrometer', manufacturer = self.man1 )
self.uniprot = ExternalDb.objects.create( db_name = 'UniProt', url_stump = 'http://www.uniprot.org/uniprot/')
bi1 = BackgroundImports()
cl = bi1.get_cell_line( MDIC )
bi1.insert_alleles( MDIC, cl_obj = cl )
bi1.insert_update_antibodies( MDIC )
bi1.create_experiment( MDIC, cl )
self.bi1 = bi1
ss_master = os.path.join( CURDIR, 'test/rj_test_experiments_index.csv')
datadir = os.path.join(CURDIR, 'test/datadir')
bulk_with_extra(self.user1.username, ss_master, datadir)
def setUp(self):
print "Running setUp bulk"
user1 = User.objects.create()
user1.set_password('f')
user1.username = '******'
user1.save()
self.user1 = user1
self.man1 = Manufacturer.objects.create(name='MZTech')
self.inst1 = Instrument.objects.create(
name='HiLine-Pro',
description='MS/MS Spectrometer',
manufacturer=self.man1)
self.uniprot = ExternalDb.objects.create(
db_name='UniProt', url_stump='http://www.uniprot.org/uniprot/')
bi1 = BackgroundImports()
cl = bi1.get_cell_line(MDIC)
bi1.insert_alleles(MDIC, cl_obj=cl)
bi1.insert_update_antibodies(MDIC)
bi1.create_experiment(MDIC, cl)
self.bi1 = bi1
ss_master = os.path.join(CURDIR, 'test/rj_test_experiments_index.csv')
datadir = os.path.join(CURDIR, 'test/datadir')
bulk_with_extra(self.user1.username, ss_master, datadir)
