示例#1
0
文件: tests.py 项目: siriuz/hdome
    def setUp(self):
        """docstring for setup"""
        print "Running setUp speedtest"
        user1 = User.objects.create()
        user1.set_password('f')
        user1.username = '******'
        user1.save()
        self.user1 = user1
        self.man1 = Manufacturer.objects.create(name='MZTech')
        self.inst1 = Instrument.objects.create(
            name='HiLine-Pro',
            description='MS/MS Spectrometer',
            manufacturer=self.man1)
        self.uniprot = ExternalDb.objects.create(
            db_name='UniProt', url_stump='http://www.uniprot.org/uniprot/')
        bi1 = BackgroundImports()
        cl = bi1.get_cell_line(MDIC)
        bi1.insert_alleles(MDIC, cl_obj=cl)
        bi1.insert_update_antibodies(MDIC)
        bi1.create_experiment(MDIC, cl)
        #self.filepath = os.path.join( CURDIR, 'scripts/Time_Trial_Import4_PeptideSummary.trial' )
        self.filepath = os.path.join(CURDIR, 'scripts/sample_large_ss.csv')
        #self.filepath = os.path.join( CURDIR, 'scripts/twentyk_trial.csv' )
        self.BGFILE = os.path.join(
            CURDIR, '../../background/newdata_with_files_correct.csv')
        self.bi1 = bi1

        def tearDown(self):
            self.bi1 = None
示例#2
0
文件: tests.py 项目: siriuz/hdome
 def setUp(self):
     """docstring for setup"""
     print "Running setUp bulk"
     user1 = User.objects.create( )
     user1.set_password( 'f' )
     user1.username = '******'
     user1.save()
     self.user1 = user1
     self.man1 = Manufacturer.objects.create( name = 'MZTech' )
     self.inst1 = Instrument.objects.create( name = 'HiLine-Pro', description = 'MS/MS Spectrometer', manufacturer = self.man1 )
     self.uniprot = ExternalDb.objects.create( db_name = 'UniProt', url_stump = 'http://www.uniprot.org/uniprot/')
     bi1 = BackgroundImports()
     cl = bi1.get_cell_line( MDIC )
     bi1.insert_alleles( MDIC, cl_obj = cl )
     bi1.insert_update_antibodies( MDIC )
     bi1.create_experiment( MDIC, cl )
     self.bi1 = bi1
示例#3
0
文件: tests.py 项目: siriuz/hdome
 def setUp(self):
     """docstring for setup"""
     print "Running setUp bulk"
     user1 = User.objects.create()
     user1.set_password('f')
     user1.username = '******'
     user1.save()
     self.user1 = user1
     self.man1 = Manufacturer.objects.create(name='MZTech')
     self.inst1 = Instrument.objects.create(
         name='HiLine-Pro',
         description='MS/MS Spectrometer',
         manufacturer=self.man1)
     self.uniprot = ExternalDb.objects.create(
         db_name='UniProt', url_stump='http://www.uniprot.org/uniprot/')
     bi1 = BackgroundImports()
     cl = bi1.get_cell_line(MDIC)
     bi1.insert_alleles(MDIC, cl_obj=cl)
     bi1.insert_update_antibodies(MDIC)
     bi1.create_experiment(MDIC, cl)
     self.bi1 = bi1
示例#4
0
 def setUp(self):
     """docstring for setup"""        
     user1 = User.objects.create( )
     user1.set_password( 'f' )
     user1.username = '******'
     user1.save()
     self.user1 = user1
     self.man1 = Manufacturer.objects.create( name = 'MZTech' )
     self.inst1 = Instrument.objects.create( name = 'HiLine-Pro', description = 'MS/MS Spectrometer', manufacturer = self.man1 )
     self.uniprot = ExternalDb.objects.create( db_name = 'UniProt', url_stump = 'http://www.uniprot.org/uniprot/')
     bi1 = BackgroundImports()
     cl = bi1.get_cell_line( MDIC )
     bi1.insert_alleles( MDIC, cl_obj = cl )
     bi1.insert_update_antibodies( MDIC )
     bi1.create_experiment( MDIC, cl )
     #self.filepath = os.path.join( CURDIR, 'scripts/Time_Trial_Import4_PeptideSummary.trial' )
     self.filepath = os.path.join( CURDIR, 'scripts/sample_large_ss.csv' )
     #self.filepath = os.path.join( CURDIR, 'scripts/twentyk_trial.csv' )
     self.BGFILE = os.path.join( CURDIR, '../../background/newdata_with_files_correct.csv' )
     self.bi1 = bi1
示例#5
0
文件: tests.py 项目: siriuz/hdome
    def setUp(self):
        print "Running setUp bulk"
        user1 = User.objects.create( )
        user1.set_password( 'f' )
        user1.username = '******'
        user1.save()
        self.user1 = user1
        self.man1 = Manufacturer.objects.create( name = 'MZTech' )
        self.inst1 = Instrument.objects.create( name = 'HiLine-Pro', description = 'MS/MS Spectrometer', manufacturer = self.man1 )
        self.uniprot = ExternalDb.objects.create( db_name = 'UniProt', url_stump = 'http://www.uniprot.org/uniprot/')
        bi1 = BackgroundImports()
        cl = bi1.get_cell_line( MDIC )
        bi1.insert_alleles( MDIC, cl_obj = cl )
        bi1.insert_update_antibodies( MDIC )
        bi1.create_experiment( MDIC, cl )
        self.bi1 = bi1

        ss_master = os.path.join( CURDIR, 'test/rj_test_experiments_index.csv')
        datadir = os.path.join(CURDIR, 'test/datadir')
        bulk_with_extra(self.user1.username, ss_master, datadir)
示例#6
0
文件: tests.py 项目: siriuz/hdome
    def setUp(self):
        print "Running setUp bulk"
        user1 = User.objects.create()
        user1.set_password('f')
        user1.username = '******'
        user1.save()
        self.user1 = user1
        self.man1 = Manufacturer.objects.create(name='MZTech')
        self.inst1 = Instrument.objects.create(
            name='HiLine-Pro',
            description='MS/MS Spectrometer',
            manufacturer=self.man1)
        self.uniprot = ExternalDb.objects.create(
            db_name='UniProt', url_stump='http://www.uniprot.org/uniprot/')
        bi1 = BackgroundImports()
        cl = bi1.get_cell_line(MDIC)
        bi1.insert_alleles(MDIC, cl_obj=cl)
        bi1.insert_update_antibodies(MDIC)
        bi1.create_experiment(MDIC, cl)
        self.bi1 = bi1

        ss_master = os.path.join(CURDIR, 'test/rj_test_experiments_index.csv')
        datadir = os.path.join(CURDIR, 'test/datadir')
        bulk_with_extra(self.user1.username, ss_master, datadir)