mat = '0'
if patient.get('gender') == 'M':
sex = 1
elif patient.get('gender') == 'F':
sex = 2
else:
sex = 0
if patient.get('case_or_control') == 'case':
phenotype = 2
elif patient.get('case_or_control') == 'control':
phenotype = 1
else:
phenotype = 0
for relative_num in bot.list_relatives(patient_id):
relative_obj = bot.get_relative(patient_id, relative_num)
relative_eid = relative_obj['relative_of']
if not relative_eid:
raise Exception('Relative ' + relative_num + ' of patient ' + patient_id + ' is malformed')
relative = bot.get(bot.get_id(relative_eid))
if relative_obj['relative_type'] == 'child':
if relative['gender'] == 'M':
if pat != '0':
raise Exception('Patient ' + iid + ' has two fathers: ' + pat + ' and ' + relative_eid)
pat = relative_eid
elif relative['gender'] == 'F':
if mat != '0':
raise Exception('Patient ' + iid + ' has two mothers: ' + mat + ' and ' + relative_eid)
mat = relative_eid
else:
raise Exception('Parent ' + relative_eid + ' is neither male nor female')
