def __init__(self, **kwargs):
ProtCTFMicrographs.__init__(self, **kwargs)
# We need to trace the changes of 'inputType' to
# dynamically modify the property of pointerClass
# of the 'inputSets' parameter
def onChangeInputType():
pointerClass = 'SetOf' + self.getEnumText('inputType')
self.inputSetsParam.setPointerClass(pointerClass)
# Initial update
onChangeInputType()
# Now keep track of changes and update
self.inputType.trace(onChangeInputType)
def _defineCtfParamsDict(self):
ProtCTFMicrographs._defineCtfParamsDict(self)
if not hasattr(self, "ctfDict"):
self.getPreviousParameters()
self._createFilenameTemplates()
self._program = 'xmipp_ctf_estimate_from_micrograph'
# Mapping between base protocol parameters and the package specific
# command options
params = self.getCtfParamsDict()
self.__params = {
'kV': params['voltage'],
'Cs': params['sphericalAberration'],
#'ctfmodelSize': params['windowSize'],
'Q0': params['ampContrast'],
'min_freq': params['lowRes'],
'max_freq': params['highRes'],
#'pieceDim': params['windowSize']
}
self._prepareArgs(self.__params)
def _defineCtfParamsDict(self):
ProtCTFMicrographs._defineCtfParamsDict(self)
self._ctfProgram = ProgramCtffind(self)
def __init__(self, **args):
ProtCTFMicrographs.__init__(self, **args)
self._freqResol = {}
self.stepsExecutionMode = params.STEPS_PARALLEL
def __init__(self, **args):
ProtCTFMicrographs.__init__(self, **args)
def _summary(self):
summary = ProtCTFMicrographs._summary(self)
if self.methodsVar.hasValue():
summary.append(self.methodsVar.get())
return summary
def _defineCtfParamsDict(self):
ProtCTFMicrographs._defineCtfParamsDict(self)
self._gctfProgram = ProgramGctf(self)