def _defineCtfParamsDict(self):
ProtCTFMicrographs._defineCtfParamsDict(self)
if not hasattr(self, "ctfDict"):
self.getPreviousParameters()
self._createFilenameTemplates()
self._program = 'xmipp_ctf_estimate_from_micrograph'
# Mapping between base protocol parameters and the package specific
# command options
params = self.getCtfParamsDict()
self.__params = {
'kV': params['voltage'],
'Cs': params['sphericalAberration'],
#'ctfmodelSize': params['windowSize'],
'Q0': params['ampContrast'],
'min_freq': params['lowRes'],
'max_freq': params['highRes'],
#'pieceDim': params['windowSize']
}
self._prepareArgs(self.__params)
def _defineCtfParamsDict(self):
ProtCTFMicrographs._defineCtfParamsDict(self)
self._ctfProgram = ProgramCtffind(self)
def _defineCtfParamsDict(self):
ProtCTFMicrographs._defineCtfParamsDict(self)
self._gctfProgram = ProgramGctf(self)