def test_trim_all_sequences_no_rev(self):
obs = _trim_all_sequences(self.aligned_seqs, {"start": 7, "end": None})
obs_seqs = {
seq.metadata['id']: str(seq)
for seq in obs.view(DNAIterator)
}
self.assertDictEqual(obs_seqs, self.exp_seqs_only_fwd)
def test_trim_all_sequences(self):
obs = _trim_all_sequences(self.aligned_seqs, {"start": 7, "end": 104})
obs_seqs = {
seq.metadata['id']: str(seq)
for seq in obs.view(DNAIterator)
}
self.assertDictEqual(obs_seqs, self.exp_seqs_both_primers)