def _singleMissingLayer(layer=30, nx=64, ny=64, nz=100, method="linear"):
expected_output = _volume(nx=nx, ny=ny, nz=nz, method=method)
volume = vigra.VigraArray(expected_output)
missing = vigra.VigraArray(np.zeros(volume.shape), axistags=volume.axistags, dtype=np.uint8)
volume[:, :, layer] = 0
missing[:] = 0
missing[:, :, layer] = 1
return (volume, missing, expected_output)
def test5D(self):
vol = vigra.VigraArray(np.ones((50, 50, 10, 3, 7)), axistags=vigra.defaultAxistags("cxzty"))
miss = vigra.VigraArray(vol)
miss[:, :, 3, 2, 4] = 1
self.op.InputVolume.setValue(vol)
self.op.Missing.setValue(miss)
self.op.Output[:].wait()
def testNothingToInterpolate(self):
vol = vigra.VigraArray( np.ones((50,50,10,3,7)), axistags=vigra.defaultAxistags('cxzty') )
miss = vigra.VigraArray(vol)*0
self.op.InputVolume.setValue(vol)
self.op.Missing.setValue(miss)
assert_array_equal( self.op.Output[:].wait(), vol.view(np.ndarray), err_msg="interpolation where nothing had to be interpolated")
def setupOutputs(self):
tags = vigra.defaultAxistags(outer_order)
a = vigra.VigraArray(outer_shape, value=1, axistags=tags)
b = vigra.VigraArray(outer_shape, value=2, axistags=tags)
self.lazyOp1.in_a.setValue(a)
self.lazyOp1.in_b.setValue(b)
self.lazyOp1.setupOutputs()
self.lazyOp2.setupOutputs()
self.lazyOp2.in_a.connect(self.lazyOp1.out_a)
self.lazyOp2.in_b.connect(self.lazyOp1.out_b)
def execute(self, slot, subindex, roi, result):
roi = roi.copy()
#request,set or compute the necessary parameters
axistags = self.Input.meta.axistags
inputShape = self.Input.meta.shape
channelIndex = axistags.index('c')
channelsPerC = self.channelsPerChannel()
channelRes = self.getChannelResolution()
timeIndex = axistags.index('t')
if timeIndex >= roi.dim:
timeIndex = None
roi.setInputShape(inputShape)
origRoi = roi.copy()
sigma = self.setupFilter()
halo = self.calculateHalo(sigma)
#set up the roi to get the necessary source
roi.expandByShape(halo, channelIndex,
timeIndex).adjustChannel(channelsPerC, channelIndex,
channelRes)
source = self.Input(roi.start, roi.stop).wait()
source = vigra.VigraArray(source, axistags=axistags)
#set up the grid for the iterator, and the iterator
srcGrid = [
source.shape[i] if i != channelIndex else channelRes
for i in range(len(source.shape))
]
trgtGrid = [
inputShape[i] if i != channelIndex else self.channelsPerChannel()
for i in range(len(source.shape))
]
if timeIndex is not None:
srcGrid[timeIndex] = 1
trgtGrid[timeIndex] = 1
nIt = newIterator(origRoi,
srcGrid,
trgtGrid,
timeIndex=timeIndex,
channelIndex=channelIndex)
#set up roi to work with vigra filters
if timeIndex > channelIndex and timeIndex is not None:
origRoi.popDim(timeIndex)
origRoi.popDim(channelIndex)
elif timeIndex < channelIndex and timeIndex is not None:
origRoi.popDim(channelIndex)
origRoi.popDim(timeIndex)
else:
origRoi.popDim(channelIndex)
origRoi.adjustRoi(halo)
#iterate over the requested volumes
#warnings.warn("TODO: This loop could be parallelized for better performance.")
for src, trgt, mask in nIt:
result[trgt] = self.vigraFilter(source=source[src],
window_size=self.windowSize,
roi=origRoi)[mask]
return result
def testPartialAllocate():
nx = 15
ny = 20
nz = 17
nc = 7
stack = vigra.VigraArray((nx, ny, nz, nc),
axistags=vigra.defaultAxistags('xyzc'))
stack[...] = numpy.random.rand(nx, ny, nz, nc)
g = Graph()
#assume that the slicer works
slicerX = OpMultiArraySlicer_REDUCE_DIM(graph=g)
slicerX.inputs["Input"].setValue(stack)
slicerX.inputs["AxisFlag"].setValue('x')
#insert the x dimension
stackerX = OpMultiArrayStacker(graph=g)
stackerX.inputs["AxisFlag"].setValue('x')
stackerX.inputs["AxisIndex"].setValue(0)
stackerX.inputs["Images"].connect(slicerX.outputs["Slices"])
key = (slice(2, 3, None), slice(15, 18,
None), slice(12, 15,
None), slice(0, 7, None))
newdata = stackerX.outputs["Output"][key].wait()
substack = stack[key]
print(newdata.shape, substack.shape)
assert_array_equal(newdata, substack.view(numpy.ndarray))
def setup(self):
graph = Graph()
try:
import blist
except ImportError:
raise unittest.SkipTest
from lazyflow.operators.opBlockedSparseLabelArray import OpBlockedSparseLabelArray
op = OpBlockedSparseLabelArray(graph=graph)
arrayshape = (1,100,100,10,1)
op.inputs["shape"].setValue( arrayshape )
blockshape = (1,10,10,10,1) # Why doesn't this work if blockshape is an ndarray?
op.inputs["blockShape"].setValue( blockshape )
op.eraser.setValue(100)
dummyData = vigra.VigraArray(arrayshape, axistags=vigra.defaultAxistags('txyzc'))
op.Input.setValue( dummyData )
slicing = sl[0:1, 1:15, 2:36, 3:7, 0:1]
inDataShape = slicing2shape(slicing)
inputData = ( 3*numpy.random.random(inDataShape) ).astype(numpy.uint8)
op.Input[slicing] = inputData
data = numpy.zeros(arrayshape, dtype=numpy.uint8)
data[slicing] = inputData
self.op = op
self.slicing = slicing
self.inData = inputData
self.data = data
def node_locations_to_array(arr_shape, node_locations):
"""
Given a vigra image in xy and a dict containing xy coordinates, return a vigra image of the same shape, where nodes
are represented by their integer ID, and every other pixel is -1.
Parameters
----------
arr_shape : tuple
node_locations : dict
dict whose values are a dicts containing a 'coords' dict (relative within this image) and a 'treenode_id' value
Returns
-------
vigra.VigraArray
"""
arr_xy = vigra.VigraArray(arr_shape,
dtype=np.int64,
value=-1,
axistags=vigra.AxisTags('xy'))
for node_location in node_locations.values():
coords = node_location['coords']
arr_xy[coords['x'], coords['y']] = int(node_location['treenode_id'])
return arr_xy
def setup(self):
graph = Graph()
op = OpCompressedUserLabelArray(graph=graph)
arrayshape = (1, 100, 100, 10, 1)
op.inputs["shape"].setValue(arrayshape)
blockshape = (1, 10, 10, 10, 1
) # Why doesn't this work if blockshape is an ndarray?
op.inputs["blockShape"].setValue(blockshape)
op.eraser.setValue(100)
dummyData = vigra.VigraArray(arrayshape,
axistags=vigra.defaultAxistags("txyzc"),
dtype=numpy.uint8)
op.Input.setValue(dummyData)
slicing = numpy.s_[0:1, 1:15, 2:36, 3:7, 0:1]
inDataShape = slicing2shape(slicing)
inputData = (3 * numpy.random.random(inDataShape)).astype(numpy.uint8)
op.Input[slicing] = inputData
data = numpy.zeros(arrayshape, dtype=numpy.uint8)
data[slicing] = inputData
# Sanity check...
assert (op.Output[:].wait()[slicing] == data[slicing]).all()
self.op = op
self.slicing = slicing
self.inData = inputData
self.data = data
def prepareVolnOp(self,
possible_axes="tzyxc",
num=5,
AxisOrder=None,
config_via_init=False):
tagStr = "".join(random.sample(possible_axes, random.randint(2, num)))
axisTags = vigra.defaultAxistags(tagStr)
self.shape = [random.randint(20, 30) for tag in axisTags]
self.array = numpy.random.rand(*self.shape) * 255
self.array = (float(250) / 255 * self.array + 5).astype(int)
self.inArray = vigra.VigraArray(self.array, axistags=axisTags)
opProvider = OpArrayProvider(graph=self.graph)
opProvider.Input.setValue(self.inArray)
if config_via_init:
self.operator = OpReorderAxes(graph=self.graph,
Input=opProvider.Output,
AxisOrder=AxisOrder)
else:
self.operator.Input.connect(opProvider.Output)
if AxisOrder is not None:
self.operator.AxisOrder.setValue(AxisOrder)
def setup_method(self, method):
self.testVol = vigra.VigraArray((200, 200, 200))
self.testVol[:] = numpy.random.rand(200, 200, 200)
self.graph = Graph()
self.op = OpArrayPiper(graph=self.graph)
self.op.inputs["Input"].setValue(self.testVol)
self.roiOp = OpRoiTest(graph=self.graph)
self.roiOp.inputs["input"].setValue(self.testVol)
def visualTest(self, operator):
if GENERATE_VISUAL_DEBUG_IMAGES:
start, stop = [200, 200, 0], [400, 400, 1]
testArray = vigra.VigraArray((400, 400, 3))
roiResult = vigra.VigraArray(
tuple([sto - sta for sta, sto in zip(start, stop)]))
testArray[100:300, 100:300, 0] = 1
testArray[200:300, 200:300, 1] = 1
testArray[100:200, 100:200, 2] = 1
operator.inputs["Input"].setValue(testArray)
wholeResult = operator.outputs["Output"]().wait()
wholeResult = wholeResult[:, :, 0:3]
roiResult[:, :, 0:1] = operator.outputs["Output"](start,
stop).wait()
vigra.impex.writeImage(testArray, operator.name + 'before.png')
vigra.impex.writeImage(wholeResult,
operator.name + 'afterWhole.png')
vigra.impex.writeImage(roiResult, operator.name + 'afterRoi.png')
def setUp(self):
self.graph = lazyflow.graph.Graph()
self.testDataFileName = 'bigH5TestData.h5'
self.datasetInternalPath = 'volume/data'
# Generate some test data
self.dataShape = (1, 10, 128, 128, 1)
self.testData = vigra.VigraArray( self.dataShape, axistags=vigra.defaultAxistags('txyzc') ) # default vigra order this time...
self.testData[...] = numpy.indices(self.dataShape).sum(0)
def testIntegerRange(self):
'''
test if the output is in the right integer range
in particular, too large values should be set to max and too small
values to min
'''
v = np.zeros((1, 1, 5), dtype=np.uint8)
v[0, 0, :] = [220, 255, 0, 255, 220]
v = vigra.VigraArray(v,
axistags=vigra.defaultAxistags('xyz'),
dtype=np.uint8)
m = vigra.VigraArray(v,
axistags=vigra.defaultAxistags('xyz'),
dtype=np.uint8)
m[:] = 0
m[0, 0, 2] = 1
for interpolationMethod in ['cubic']:
self.op.InputVolume.setValue(v)
self.op.Missing.setValue(m)
self.op.InterpolationMethod.setValue(interpolationMethod)
self.op.InputVolume.setValue(v)
out = self.op.Output[:].wait().view(np.ndarray)
# natural comparison
self.assertEqual(out[0, 0, 2], 255)
v = np.zeros((1, 1, 5), dtype=np.uint8)
v[0, 0, :] = [220, 255, 0, 255, 220]
v = 255 - vigra.VigraArray(
v, axistags=vigra.defaultAxistags('xyz'), dtype=np.uint8)
m = vigra.VigraArray(v,
axistags=vigra.defaultAxistags('xyz'),
dtype=np.uint8)
m[:] = 0
m[0, 0, 2] = 1
for interpolationMethod in ['cubic']:
self.op.InputVolume.setValue(v)
self.op.Missing.setValue(m)
self.op.InterpolationMethod.setValue(interpolationMethod)
self.op.InputVolume.setValue(v)
out = self.op.Output[:].wait().view(np.ndarray)
# natural comparison
self.assertEqual(out[0, 0, 2], 0)
def test_OpMaxChannelIndicatorOperator_unexpected_roi_raises(graph):
data = vigra.VigraArray(numpy.zeros((1, 3, 5, 7, 2)),
axistags=vigra.defaultAxistags("tzyxc"))
with pytest.raises(InvalidRoiException):
# automatically connects op1.Output to op2.Input ...
with Pipeline(graph=graph) as pipe_line:
pipe_line.add(OpArrayPiper, Input=data)
pipe_line.add(OpMaxChannelIndicatorOperator)
pipe_line[-1].Output[()].wait()
def setup_method(self, method):
self.graph = lazyflow.graph.Graph()
self.testDataH5FileName = "bigH5TestData.h5"
self.testDataN5FileName = "bigN5TestData.n5"
self.datasetInternalPath = "volume/data"
# Generate some test data
self.dataShape = (1, 10, 128, 128, 1)
self.testData = vigra.VigraArray(
self.dataShape, axistags=vigra.defaultAxistags("txyzc"), order="C")
self.testData[...] = numpy.indices(self.dataShape).sum(0)
def setUp(self):
self.graph = lazyflow.graph.Graph()
self._tmpdir = tempfile.mkdtemp()
# Generate some test data
self.dataShape = (1, 10, 64, 128, 2)
self._axisorder = 'tzyxc'
self.testData = vigra.VigraArray( self.dataShape,
axistags=vigra.defaultAxistags(self._axisorder),
order='C' ).astype(numpy.uint8)
self.testData[...] = numpy.indices(self.dataShape).sum(0)
def test_OpMaxChannelIndicatorOperator_all_zeros(graph):
"""Special case for all zeros in probability maps"""
data = vigra.VigraArray(numpy.zeros((1, 3, 5, 7, 2)),
axistags=vigra.defaultAxistags("tzyxc"))
# automatically connects op1.Output to op2.Input ...
with Pipeline(graph=graph) as pipe_line:
pipe_line.add(OpArrayPiper, Input=data)
pipe_line.add(OpMaxChannelIndicatorOperator)
for c in range(data.channels):
assert not numpy.any(pipe_line[-1].Output[..., c].wait())
def _volume(nx=64,ny=64,nz=100,method='linear'):
b = vigra.VigraArray( np.ones((nx,ny,nz)), axistags=vigra.defaultAxistags('xyz') )
if method == 'linear':
for i in range(b.shape[2]): b[:,:,i]*=(i+1)+50
elif method == 'cubic':
s = nz//3
for z in range(b.shape[2]): b[:,:,z]= (z-s)**2*z*150.0/(nz*(nz-s)**2) + 30
elif method == 'constant':
b[:] = 124
else:
raise NotImplementedError("unknown method '{}'.".format(method))
return b
def generalOperatorTest(self, operator):
for dim in self.testDimensions:
testArray = vigra.VigraArray(
(20, ) * len(dim),
axistags=vigra.VigraArray.defaultAxistags(dim))
testArray[(slice(2, 5, None), ) * len(dim)] = 10
operator.inputs["Input"].setValue(testArray)
for i, j in [(i, j)
for i, j in itertools.permutations(range(0, 10), 2)
if i < j]:
start = [i] * len(dim)
stop = [j] * len(dim)
operator.outputs["Output"](start, stop).wait()
def test_reorderd_ops_in_parent_op(self):
opParent = OpParent(graph=Graph())
opParent.setupOutputs()
# check that method types are treated correctly (actual tests in LazyOp)
opParent.lazyOp1.meth(*test_args)
opParent.lazyOp1.class_meth(*test_args)
opParent.lazyOp1.static_meth(*test_args)
opParent.lazyOp1.property_meth
opParent.lazyOp1.except_meth(*test_args)
# when accessing the child's operators they should conform with the outside order. Here, the shape of the
# resulting numpy.ndarray is tested to make sure we are not just checking meta data.
assert opParent.lazyOp1.out_a[:].wait().shape == outer_shape
assert opParent.lazyOp1.out_b[:].wait().shape == outer_shape
tags = vigra.defaultAxistags(outer_order)
expect = vigra.VigraArray(outer_shape, value=3, axistags=tags)
assert (expect == opParent.lazyOp1.out_b[:].wait()).all()
assert expect.axistags == opParent.lazyOp1.out_b.meta.axistags
assert expect.shape == opParent.lazyOp1.out_b.meta.shape
assert opParent.lazyOp2.in_a[:].wait().shape == outer_shape
assert opParent.lazyOp2.in_b[:].wait().shape == outer_shape
assert opParent.lazyOp2.out_a[:].wait().shape == outer_shape
assert opParent.lazyOp2.out_b[:].wait().shape == outer_shape
tags = vigra.defaultAxistags(outer_order)
expect = vigra.VigraArray(outer_shape, value=4, axistags=tags)
assert (expect == opParent.lazyOp2.out_b[:].wait()).all()
assert expect.axistags == opParent.lazyOp2.out_b.meta.axistags
assert expect.shape == opParent.lazyOp2.out_b.meta.shape
# checking inner shapes by pretending to make inner calls
opParent.lazyOp2._inner_call = True
assert opParent.lazyOp2.in_a[:].wait().shape == inner_shape
assert opParent.lazyOp2.in_b[:].wait().shape == inner_shape
assert opParent.lazyOp2.out_a[:].wait().shape == inner_shape
assert opParent.lazyOp2.out_b[:].wait().shape == inner_shape
def setUp(self):
self.graph = lazyflow.graph.Graph()
self._tmpdir = tempfile.mkdtemp()
self._name_pattern = 'test_stack_slice_{slice_index}.png'
self._stack_filepattern = os.path.join( self._tmpdir, self._name_pattern )
# Generate some test data
self.dataShape = (1, 10, 64, 128, 2)
self._axisorder = 'tzyxc'
self.testData = vigra.VigraArray( self.dataShape,
axistags=vigra.defaultAxistags(self._axisorder),
order='C' ).astype(numpy.uint8)
self.testData[...] = numpy.indices(self.dataShape).sum(0)
def setupClass(cls):
cls.tmpdir = tempfile.mkdtemp()
cls.imgFileNames2D = []
cls.imgFileNames2Dc = []
# Comparison of compressed data not possible - those types will be
# skipped in raw comparison:
cls.compressedExtensions = ['.jpg', '.jpeg']
cls.projectFileName = os.path.join(cls.tmpdir, 'testProject.ilp')
# Create a couple test images of different types
# in order to simplify and unify testing among the different file types
# the extra dimension is added, as vigra would add one anyway.
cls.imgData2D = numpy.random.randint(0, 255,
(10, 11, 1)).astype(numpy.uint8)
# v- image data variables in order to reflect the correct axis-order
# otherwise the axes get scrambled when writing/reloading
vimgData2D = vigra.VigraArray(cls.imgData2D,
axistags=vigra.defaultAxistags('yxc'),
dtype=numpy.uint8)
testNpyFileName = os.path.join(cls.tmpdir, "testimage2D.npy")
numpy.save(testNpyFileName, cls.imgData2D)
cls.imgFileNames2D.append(testNpyFileName)
testNpzFileName = os.path.join(cls.tmpdir, "testimage2D.npz")
numpy.savez(testNpzFileName, data=cls.imgData2D)
testNpzFileName = "{}/data".format(testNpzFileName)
cls.imgFileNames2D.append(testNpzFileName)
testH5FileName = os.path.join(cls.tmpdir, "testimage2D.h5")
vigra.impex.writeHDF5(data=cls.imgData2D,
filenameOrGroup=testH5FileName,
pathInFile='test/data')
testH5FileName = "{}/test/data".format(testH5FileName)
cls.imgFileNames2D.append(testH5FileName)
for extension in vigra.impex.listExtensions().split(' '):
tmpFileName = os.path.join(cls.tmpdir,
"testImage2D.{}".format(extension))
# not all extensions support this kind of pixeltype
try:
vigra.impex.writeImage(
vimgData2D,
tmpFileName,
)
cls.imgFileNames2D.append(tmpFileName)
except RuntimeError, e:
msg = str(e).replace('\n', '')
print(
"Couldn't write temp 2D image file using vigra with `{}` "
"extension : {}".format(extension, msg))
def reorder_axes(input_arr: numpy.ndarray, *, from_axes_tags: str, to_axes_tags: str):
if isinstance(from_axes_tags, AxisTags):
from_axes_tags = "".join(from_axes_tags.keys())
if isinstance(to_axes_tags, AxisTags):
to_axes_tags = "".join(to_axes_tags.keys())
op = OpReorderAxes(graph=Graph())
tagged_arr = vigra.VigraArray(input_arr, axistags=vigra.defaultAxistags(from_axes_tags))
op.Input.setValue(tagged_arr)
op.AxisOrder.setValue(to_axes_tags)
return op.Output([]).wait()
def get_result_operator(input_data):
"""
Returns the result of the wrapping operator pipeline, which gets
accessed via the GUI.
"""
input_data = vigra.VigraArray(input_data, axistags=vigra.defaultAxistags(AXIS_TAGS))
graph = Graph()
with Pipeline(graph=graph) as get_wsdt:
get_wsdt.add(OpArrayPiper, Input=input_data)
get_wsdt.add(OpCachedWsdt, FreezeCache=False)
wsdt_result = get_wsdt[-1].outputs["Superpixels"][:].wait()
return wsdt_result
def prepareVolnOp(self):
tags = random.sample(self.axis, random.randint(2, len(self.axis)))
tagStr = ''
for s in tags:
tagStr += s
axisTags = vigra.defaultAxistags(tagStr)
self.shape = []
for tag in axisTags:
self.shape.append(random.randint(20, 30))
self.array = (numpy.random.rand(*tuple(self.shape)) * 255)
self.array = (float(250) / 255 * self.array + 5).astype(int)
self.inArray = vigra.VigraArray(self.array, axistags=axisTags)
self.operator.inputs["input"].setValue(self.inArray)
def test_OpMaxChannelIndicatorOperator(graph):
data = vigra.VigraArray(numpy.zeros((1, 3, 5, 7, 2)),
axistags=vigra.defaultAxistags("tzyxc"))
data[:, :, :, ::2, 0] = 1
data[:, :, :, 1::2, 1] = 1
expected = data == 1
# automatically connects op1.Output to op2.Input ...
with Pipeline(graph=graph) as pipe_line:
pipe_line.add(OpArrayPiper, Input=data)
pipe_line.add(OpMaxChannelIndicatorOperator)
for c in range(data.channels):
numpy.testing.assert_array_equal(
pipe_line[-1].Output[..., c].wait(), expected[..., c, None])
def prepareVolnOp(self, possible_axes='tzyxc', num=5):
tags = random.sample(possible_axes, random.randint(2, num))
tagStr = ''
for s in tags:
tagStr += s
axisTags = vigra.defaultAxistags(tagStr)
self.shape = []
for tag in axisTags:
self.shape.append(random.randint(20, 30))
self.array = (numpy.random.rand(*tuple(self.shape)) * 255)
self.array = (float(250) / 255 * self.array + 5).astype(int)
self.inArray = vigra.VigraArray(self.array, axistags=axisTags)
opProvider = OpArrayProvider(graph=self.operator.graph)
opProvider.Input.setValue(self.inArray)
self.operator.Input.connect(opProvider.Output)
def extend_data_tzyxc(self, data_nr=None):
"""Extends the dimension of the dataset and its labels to tzyxc.
If data_nr is None, all datasets are extended.
:param data_nr: number of dataset
"""
if data_nr is None:
for i in range(self.data_count):
self.extend_data_tzyxc(i)
else:
# Reshape the data with the correct axistags.
data = self.get_data(data_nr)
axisorder = self.get_axisorder(data_nr)
if not hasattr(data, "axistags"):
data = vigra.VigraArray(
data,
axistags=vigra.defaultAxistags(axisorder),
dtype=data.dtype)
new_data = reshape_tzyxc(data)
# Save the reshaped dataset.
output_folder, output_filename = os.path.split(
self.get_cache_data_path(data_nr))
output_path = os.path.join(
output_folder,
str(data_nr).zfill(4) + "_" + output_filename)
if self.is_internal(data_nr):
output_key = self.get_dataset_id(data_nr)
else:
output_key = self.get_data_key(data_nr)
vigra.writeHDF5(new_data,
output_path,
output_key,
compression=self._compression)
# Update the project file.
self.set_data_path_key(data_nr, output_path, output_key)
self._set_internal(data_nr, False)
self.set_axisorder(data_nr, "tzyxc")
self._set_axistags_from_data(data_nr)
# If the dataset has labels, reshape them.
if self._label_block_count(data_nr) > 0:
self._reshape_labels(data_nr, axisorder, "tzyxc")
def test_OpMaxChannelIndicatorOperator_tied_pixels(graph):
data = vigra.VigraArray(numpy.zeros((1, 3, 5, 7, 2)),
axistags=vigra.defaultAxistags("tzyxc"))
data[..., 0] = 1
data[:, :, 0:2, 0:2, :] = 0.5
# for tied pixels we expect the first occurrence to "win"
expected = numpy.zeros_like(data)
expected[..., 0] = 1
# automatically connects op1.Output to op2.Input ...
with Pipeline(graph=graph) as pipe_line:
pipe_line.add(OpArrayPiper, Input=data)
pipe_line.add(OpMaxChannelIndicatorOperator)
for c in range(data.channels):
numpy.testing.assert_array_equal(
pipe_line[-1].Output[..., c].wait(), expected[..., c, None])
