def checkResult(self, testfiles, outDir, random):
error = ""
try:
from xmipp import FileName, Image, compareTwoFiles, compareTwoMetadataFiles
for file in testfiles:
file = join(outDir, file)
fileGoldStd = file.replace(self.fnDir, 'goldStandard')
result = True
if not exists(file):
error += file + " was NOT produced\n"
else:
if (random):
self.warning += file + " was created using a random seed, check skipped\n"
self.warningFlag = True
else:
fnGoldStd = FileName(fileGoldStd)
if fnGoldStd.isImage():
im1 = Image(fileGoldStd)
im2 = Image(file)
result = im1.equal(im2, 0.001)
elif fnGoldStd.isMetaData():
result = compareTwoMetadataFiles(file, fileGoldStd)
else:
result = compareTwoFiles(file, fileGoldStd, 0)
if not result:
error += " file '%s' and '%s' are NOT identical\n" % (
file, fileGoldStd)
except KeyboardInterrupt:
raise
except Exception, ex:
error += " Error checking results: '%s'\n" % str(ex)
def checkResult(self, testfiles, outDir, random):
error = ""
try:
from xmipp import FileName, Image, compareTwoFiles, compareTwoMetadataFiles
for file in testfiles:
file = join(outDir, file)
fileGoldStd = file.replace(self.fnDir, 'goldStandard')
result = True
if not exists(file):
error += file + " was NOT produced\n"
else:
if (random):
self.warning += file + " was created using a random seed, check skipped\n"
self.warningFlag = True
else:
fnGoldStd = FileName(fileGoldStd)
if fnGoldStd.isImage():
im1 = Image(fileGoldStd)
im2 = Image(file)
result = im1.equal(im2, 0.001)
elif fnGoldStd.isMetaData():
result = compareTwoMetadataFiles(file, fileGoldStd)
else:
result = compareTwoFiles(file, fileGoldStd, 0)
if not result:
error += " file '%s' and '%s' are NOT identical\n" % (file, fileGoldStd)
except KeyboardInterrupt:
raise
except Exception, ex:
error += " Error checking results: '%s'\n" % str(ex)
