def run_hefesto_morb():
for thing in os.listdir(home_dir_list[0] + "/MORB_Control_Files"):
print "\n" + "Opening HeFESTo for " + str(thing) + "\n"
time.sleep(2)
if "control" in os.listdir(home_dir_list[0]):
os.remove(home_dir_list[0] + "/control")
else:
pass
os.chdir(home_dir_list[0] + "/MORB_Control_Files")
print "Copying" + str(thing) + " to path " + home_dir_list[0] + "..." + "\n"
todir = home_dir_list[0] + "/" + "control"
copyfromdir = home_dir_list[0] + "/MORB_Control_Files/" + str(thing)
shutil.copy(copyfromdir, todir)
os.chdir(home_dir_list[0])
#src = str(thing)
#drc = "control"
#os.rename(src, drc)
print("Performing calculations on {thing!r} ...".format(**vars()))
print "\n"
print "\n" + "Opening HeFESTo for calculations on " + str(thing) + " ..." + "\n"
print "\n"
#working_dir = os.curdir()
#Popen(["main"], cwd=working_dir, stdin=PIPE)
argz = home_dir_list[0] + "/main"
p = subprocess.Popen(argz, stdin=None, stdout=None)
t = Timer(800, p.kill)
print "\n" + "Timeout timer started. 800 seconds until the process is terminated and the loop continues..." + "\n"
t.start()
t.communicate()
t.cancel()
print "\n" + "Copying output files to" + home_dir_list[0]+ "/MORB_Output_Files' directory..." + "\n"
try:
os.remove("control")
except:
print "\n" + "Control file not found!" + "\n"
pass
if "fort.66" in os.listdir(home_dir_list[0]):
print "\n" + "fort.66 found!" + "\n"
theoutputfile66 = home_dir_list[0] + "/" + "fort.66"
outputtodir66 = home_dir_list[0] + "/MORB_Output_Files/fort.66_files/" + "fort.66."+str(thing)+"_morb"
shutil.move(theoutputfile66, outputtodir66)
else:
print "fort.66." + str(thing) + " not found!"
pass
if "fort.58" in os.listdir(home_dir_list[0]):
print "\n" + "fort.58 found!" + "\n"
theoutputfile58 = home_dir_list[0] + "/" + "fort.58"
outputtodir58 = home_dir_list[0] + "/MORB_Output_Files/fort.58_files/" + "fort.58."+str(thing)+"_morb"
shutil.move(theoutputfile58, outputtodir58)
else:
print "fort.58." + str(thing) + " not found!"
pass
if "fort.59" in os.listdir(home_dir_list[0]):
print "\n" + "fort.59 found!" + "\n"
theoutputfile59 = home_dir_list[0] + "/" + "fort.59"
outputtodir59 = home_dir_list[0] + "/MORB_Output_Files/fort.59_files/" + "fort.59."+str(thing)+"_morb"
shutil.move(theoutputfile59, outputtodir59)
else:
print "fort.59." + str(thing) + " not found!"
pass
print "LOOP FINISHED FOR " + str(thing)
time.sleep(2)
#except Exception:
# traceback.print_exc()
# print "\n"
# print "Calculation failure for " + str(thing) + ". Moving on..."
# print "\n"
else:
print "\n"
print "Done with MORB HeFESTo calculations. Exiting script..." + "\n\n\n\n"
print "___________________________________________________________"
print "\n"
