def test_KDTree_neighbour(self):
for i in range(0, 10):
self.assertTrue(_neighbor_test(nr_points, dim, bucket_size,
radius))
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
try:
import numpy
except ImportError:
from Bio import MissingExternalDependencyError
raise MissingExternalDependencyError(\
"Install NumPy if you want to use Bio.KDTree.")
from Bio.KDTree.KDTree import _neighbor_test, _test
nr_points=5000
dim=3
bucket_size=5
radius=0.01
for i in range(0, 10):
_neighbor_test(nr_points, dim, bucket_size, radius)
_test(nr_points, dim, bucket_size, radius)
#TODO - What if numpy was installed after Biopython,
#meaning KDTree's C code hasn't been compiled?
try:
import numpy
except ImportError:
from Bio import MissingExternalDependencyError
raise MissingExternalDependencyError(\
"Install NumPy if you want to use Bio.KDTree.")
from Bio.KDTree.KDTree import _neighbor_test, _test
nr_points = 5000
dim = 3
bucket_size = 5
radius = 0.01
for i in range(0, 10):
_neighbor_test(nr_points, dim, bucket_size, radius)
_test(nr_points, dim, bucket_size, radius)
