def test_seqfile_format_other(self):
seq_file = open(self.other_filename, 'w')
seq_file.write(str(self.seq))
seq_file.close()
format, name = seqfile_ops.seqfile_format(self.other_filename)
self.assertEqual(format, 'unidentified')
def test_seqfile_format_gbk(self):
count = seqfile_ops.write_genbank(self.gbk_filename,
self.record)
self.assertIs(count, 1)
format, name = seqfile_ops.seqfile_format(self.gbk_filename)
self.assertEqual(format, 'genbank')
def test_seqfile_format_seq(self):
seq_file = open(self.seq_filename, 'w')
seq_file.write(str(self.seq))
seq_file.close()
format, name = seqfile_ops.seqfile_format(self.seq_filename)
self.assertEqual(format, 'seq')
def test_seqfile_format_fas(self):
count = seqfile_ops.write_fasta(self.fas_filename, self.record)
self.assertIs(count, 1)
format, name = seqfile_ops.seqfile_format(self.fas_filename)
self.assertEqual(format, 'fasta')
