class X6StreamSelector(Filter):
"""Digital demodulation and filtering to select a particular frequency multiplexed channel"""
sink = InputConnector()
source = OutputConnector()
phys_channel = IntParameter(value_range=(1,3), snap=1)
dsp_channel = IntParameter(value_range=(0,4), snap=1)
stream_type = Parameter(allowed_values=["Raw", "Demodulated", "Integrated"], default='Demodulated')
def __init__(self, name=""):
super(X6StreamSelector, self).__init__(name=name)
self.stream_type.value = "Raw" # One of Raw, Demodulated, Integrated
self.quince_parameters = [self.phys_channel, self.dsp_channel, self.stream_type]
def get_descriptor(self, source_instr_settings, channel_settings):
# Create a channel
channel = X6Channel(channel_settings)
descrip = DataStreamDescriptor()
# If it's an integrated stream, then the time axis has already been eliminated.
# Otherswise, add the time axis.
if channel_settings['stream_type'] == 'Raw':
samp_time = 4.0e-9
descrip.add_axis(DataAxis("time", samp_time*np.arange(source_instr_settings['record_length']//4)))
descrip.dtype = np.float64
elif channel_settings['stream_type'] == 'Demodulated':
samp_time = 32.0e-9
descrip.add_axis(DataAxis("time", samp_time*np.arange(source_instr_settings['record_length']//32)))
descrip.dtype = np.complex128
else: # Integrated
descrip.dtype = np.complex128
return channel, descrip
class AlazarStreamSelector(Filter):
"""Digital demodulation and filtering to select a particular frequency multiplexed channel"""
sink = InputConnector()
source = OutputConnector()
channel = IntParameter(value_range=(1, 2), snap=1)
# def __init__(self, name=""):
# super(AlazarStreamSelector, self).__init__(name=name)
# self.channel.value = 1 # Either 1 or 2
# self.quince_parameters = [self.channel]
def get_channel(self, channel_proxy):
"""Create and return a channel object corresponding to this stream selector"""
return AlazarChannel(channel_proxy)
def get_descriptor(self, stream_selector, receiver_channel):
"""Get the axis descriptor corresponding to this stream selector. For the Alazar cards this
is always just a time axis."""
samp_time = 1.0 / receiver_channel.receiver.sampling_rate
descrip = DataStreamDescriptor()
descrip.add_axis(
DataAxis(
"time",
samp_time *
np.arange(receiver_channel.receiver.record_length)))
return descrip
class X6StreamSelector(Filter):
"""Digital demodulation and filtering to select a particular frequency multiplexed channel"""
sink = InputConnector()
source = OutputConnector()
channel = IntParameter(value_range=(1, 3), snap=1)
dsp_channel = IntParameter(value_range=(0, 4), snap=1)
stream_type = Parameter(
allowed_values=["raw", "demodulated", "integrated"],
default='demodulated')
# def __init__(self, name=""):
# super(X6StreamSelector, self).__init__(name=name)
# self.stream_type.value = "Raw" # One of Raw, Demodulated, Integrated
# self.quince_parameters = [self.channel, self.dsp_channel, self.stream_type]
def get_channel(self, channel_proxy):
"""Create and return a channel object corresponding to this stream selector"""
return X6Channel(channel_proxy)
def get_descriptor(self, stream_selector, receiver_channel):
"""Get the axis descriptor corresponding to this stream selector. If it's an integrated stream,
then the time axis has already been eliminated. Otherswise, add the time axis."""
descrip = DataStreamDescriptor()
if stream_selector.stream_type == 'raw':
samp_time = 4.0e-9
descrip.add_axis(
DataAxis(
"time",
samp_time *
np.arange(receiver_channel.receiver.record_length // 4)))
descrip.dtype = np.float64
elif stream_selector.stream_type == 'demodulated':
samp_time = 32.0e-9
descrip.add_axis(
DataAxis(
"time",
samp_time *
np.arange(receiver_channel.receiver.record_length // 32)))
descrip.dtype = np.complex128
else: # Integrated
descrip.dtype = np.complex128
return descrip
class AlazarStreamSelector(Filter):
"""Digital demodulation and filtering to select a particular frequency multiplexed channel"""
sink = InputConnector()
source = OutputConnector()
channel = IntParameter(value_range=(1,2), snap=1)
def __init__(self, name=""):
super(AlazarStreamSelector, self).__init__(name=name)
self.channel.value = 1 # Either 1 or 2
self.quince_parameters = [self.channel]
def get_descriptor(self, source_instr_settings, channel_settings):
channel = AlazarChannel(channel_settings)
# Add the time axis
samp_time = 1.0/source_instr_settings['sampling_rate']
descrip = DataStreamDescriptor()
descrip.add_axis(DataAxis("time", samp_time*np.arange(source_instr_settings['record_length'])))
return channel, descrip
class DummydigStreamSelector(Filter):
sink = InputConnector()
source = OutputConnector()
channel = IntParameter(value_range=(1, 2), snap=1)
def __init__(self, name=""):
super(DummydigStreamSelector, self).__init__(name=name)
self.channel.value = 1 # Either 1 or 2
self.quince_parameters = [self.channel]
def get_descriptor(self, source_instr_settings, channel_settings):
channel = DummydigChannel(channel_settings)
# Add the time axis
samp_time = 1.0 / source_instr_settings['sampling_rate']
descrip = DataStreamDescriptor()
descrip.add_axis(
DataAxis(
"time",
samp_time * np.arange(source_instr_settings['record_length'])))
return channel, descrip
class SWERExperiment(Experiment):
""" Experiment class for Switching probability measurment
Determine switching probability for V << V0
with varying V (and durations?)
"""
field = FloatParameter(default=0.0, unit="T")
pulse_duration = FloatParameter(default=1.0e-9, unit="s")
pulse_voltage = FloatParameter(default=0.1, unit="V")
repeats = IntParameter(default = 1) # Dummy parameter for repeating
voltage = OutputConnector()
attempts = 1 << 12
settle_delay = 100e-6
measure_current = 3.0e-6
samps_per_trig = 5
polarity = 1
min_daq_voltage = 0.0
max_daq_voltage = 0.4
reset_amplitude = 0.1
reset_duration = 5.0e-9
mag = AMI430("192.168.5.109")
lock = SR865("USB0::0xB506::0x2000::002638::INSTR")
# pspl = Picosecond10070A("GPIB0::24::INSTR")
arb = KeysightM8190A("192.168.5.108")
keith = Keithley2400("GPIB0::25::INSTR")
def init_streams(self):
# Baked in data axes
descrip = DataStreamDescriptor()
descrip.add_axis(DataAxis("sample", range(self.samps_per_trig)))
descrip.add_axis(DataAxis("state", range(2)))
descrip.add_axis(DataAxis("attempt", range(self.attempts)))
self.voltage.set_descriptor(descrip)
def init_instruments(self):
# ===================
# Setup the Keithley
# ===================
self.keith.triad()
self.keith.conf_meas_res(res_range=1e5)
self.keith.conf_src_curr(comp_voltage=0.5, curr_range=1.0e-5)
self.keith.current = self.measure_current
self.mag.ramp()
# ===================
# Setup the AWG
# ===================
self.arb.set_output(True, channel=1)
self.arb.set_output(False, channel=2)
self.arb.sample_freq = 12.0e9
self.arb.waveform_output_mode = "WSPEED"
self.arb.set_output_route("DC", channel=1)
self.arb.voltage_amplitude = 1.0
self.arb.set_marker_level_low(0.0, channel=1, marker_type="sync")
self.arb.set_marker_level_high(1.5, channel=1, marker_type="sync")
self.arb.continuous_mode = False
self.arb.gate_mode = False
self.setup_arb(self.pulse_voltage.value)
# ===================
# Setup the NIDAQ
# ===================
self.analog_input = Task()
self.read = int32()
self.buf_points = 2*self.samps_per_trig*self.attempts
self.analog_input.CreateAIVoltageChan("Dev1/ai1", "", DAQmx_Val_Diff,
self.min_daq_voltage, self.max_daq_voltage, DAQmx_Val_Volts, None)
self.analog_input.CfgSampClkTiming("", 1e6, DAQmx_Val_Rising, DAQmx_Val_FiniteSamps , self.samps_per_trig)
self.analog_input.CfgInputBuffer(self.buf_points)
self.analog_input.CfgDigEdgeStartTrig("/Dev1/PFI0", DAQmx_Val_Rising)
self.analog_input.SetStartTrigRetriggerable(1)
self.analog_input.StartTask()
# Assign methods
self.field.assign_method(self.mag.set_field)
self.pulse_voltage.assign_method(self.setup_arb)
def setup_arb(self,volt):
def arb_pulse(amplitude, duration, sample_rate=12e9):
arb_voltage = arb_voltage_lookup()
pulse_points = int(duration*sample_rate)
if pulse_points < 320:
wf = np.zeros(320)
else:
wf = np.zeros(64*np.ceil(pulse_points/64.0))
wf[:pulse_points] = np.sign(amplitude)*arb_voltage(abs(amplitude))
return wf
self.arb.abort()
self.arb.delete_all_waveforms()
self.arb.reset_sequence_table()
# Reset waveform
reset_wf = arb_pulse(-self.polarity*self.reset_amplitude, self.reset_duration)
wf_data = KeysightM8190A.create_binary_wf_data(reset_wf)
rst_segment_id = self.arb.define_waveform(len(wf_data))
self.arb.upload_waveform(wf_data, rst_segment_id)
# Switching waveform
switch_wf = arb_pulse(self.polarity*volt, self.pulse_duration.value)
wf_data = KeysightM8190A.create_binary_wf_data(switch_wf)
sw_segment_id = self.arb.define_waveform(len(wf_data))
self.arb.upload_waveform(wf_data, sw_segment_id)
# NIDAQ trigger waveform
nidaq_trig_wf = KeysightM8190A.create_binary_wf_data(np.zeros(3200), sync_mkr=1)
nidaq_trig_segment_id = self.arb.define_waveform(len(nidaq_trig_wf))
self.arb.upload_waveform(nidaq_trig_wf, nidaq_trig_segment_id)
settle_pts = int(640*np.ceil(self.settle_delay * 12e9 / 640))
scenario = Scenario()
seq = Sequence(sequence_loop_ct=int(self.attempts))
#First try with reset flipping pulse
seq.add_waveform(rst_segment_id)
seq.add_idle(settle_pts, 0.0)
seq.add_waveform(nidaq_trig_segment_id)
seq.add_idle(1 << 16, 0.0) # bonus non-contiguous memory delay
seq.add_waveform(sw_segment_id)
seq.add_idle(settle_pts, 0.0)
seq.add_waveform(nidaq_trig_segment_id)
seq.add_idle(1 << 16, 0.0) # bonus non-contiguous memory delay
scenario.sequences.append(seq)
self.arb.upload_scenario(scenario, start_idx=0)
self.arb.sequence_mode = "SCENARIO"
self.arb.scenario_advance_mode = "REPEAT"
self.arb.scenario_start_index = 0
self.arb.run()
async def run(self):
# Keep track of the previous values
logger.debug("Waiting for filters.")
await asyncio.sleep(1.0)
self.arb.advance()
self.arb.trigger()
buf = np.empty(self.buf_points)
self.analog_input.ReadAnalogF64(self.buf_points, -1, DAQmx_Val_GroupByChannel,
buf, self.buf_points, byref(self.read), None)
await self.voltage.push(buf)
# Seemingly we need to give the filters some time to catch up here...
await asyncio.sleep(0.002)
logger.debug("Stream has filled {} of {} points".format(self.voltage.points_taken, self.voltage.num_points() ))
def shutdown_instruments(self):
self.keith.current = 0.0e-5
# self.mag.zero()
self.arb.stop()
try:
self.analog_input.StopTask()
except Exception as e:
print("Warning: failed to stop task (this normally happens with no consequences when taking multiple samples per trigger).")
pass
class Channelizer(Filter):
"""Digital demodulation and filtering to select a particular frequency multiplexed channel. If
an axis name is supplied to `follow_axis` then the filter will demodulate at the freqency
`axis_frequency_value - follow_freq_offset` otherwise it will demodulate at `frequency`. Note that
the filter coefficients are still calculated with respect to the `frequency` paramter, so it should
be chosen accordingly when `follow_axis` is defined."""
sink = InputConnector()
source = OutputConnector()
follow_axis = Parameter(default="") # Name of the axis to follow
follow_freq_offset = FloatParameter(default=0.0) # Offset
decimation_factor = IntParameter(value_range=(1, 100), default=4, snap=1)
frequency = FloatParameter(value_range=(-10e9, 10e9),
increment=1.0e6,
default=10e6)
bandwidth = FloatParameter(value_range=(0.00, 100e6),
increment=0.1e6,
default=5e6)
def __init__(self,
frequency=None,
bandwidth=None,
decimation_factor=None,
follow_axis=None,
follow_freq_offset=None,
**kwargs):
super(Channelizer, self).__init__(**kwargs)
if frequency:
self.frequency.value = frequency
if bandwidth:
self.bandwidth.value = bandwidth
if decimation_factor:
self.decimation_factor.value = decimation_factor
if follow_axis:
self.follow_axis.value = follow_axis
if follow_freq_offset:
self.follow_freq_offset.value = follow_freq_offset
self.quince_parameters = [
self.decimation_factor, self.frequency, self.bandwidth
]
self._phase = 0.0
def final_init(self):
self.init_filters(self.frequency.value, self.bandwidth.value)
if self.follow_axis.value is not "":
desc = self.sink.descriptor
axis_num = desc.axis_num(self.follow_axis.value)
self.pts_before_freq_update = desc.num_points_through_axis(
axis_num + 1)
self.pts_before_freq_reset = desc.num_points_through_axis(axis_num)
self.demod_freqs = desc.axes[
axis_num].points - self.follow_freq_offset.value
self.current_freq = 0
self.update_references(self.current_freq)
self.idx = 0
# For storing carryover if getting uneven buffers
self.carry = np.zeros(0, dtype=self.output_descriptor.dtype)
def update_references(self, frequency):
# store decimated reference for mix down
# phase_drift = 2j*np.pi*0.5e-6 * (abs(frequency) - 100e6)
ref = np.exp(2j * np.pi * -frequency * self.time_pts[::self.d1] +
1j * self._phase,
dtype=np.complex64)
self.reference = ref
self.reference_r = np.real(ref)
self.reference_i = np.imag(ref)
def init_filters(self, frequency, bandwidth):
# convert bandwidth normalized to Nyquist interval
n_bandwidth = bandwidth * self.time_step * 2
n_frequency = abs(frequency) * self.time_step * 2
# arbitrarily decide on three stage filter pipeline
# 1. first stage decimating filter on real data
# 2. second stage decimating filter on mixed product to boost n_bandwidth
# 3. final channel selecting filter at n_bandwidth/2
# anecdotally don't decimate more than a factor of eight for stability
self.decim_factors = [1] * 3
self.filters = [None] * 3
# first stage decimating filter
# maximize first stage decimation:
# * minimize subsequent stages time taken
# * filter and decimate while signal is still real
# * first stage decimation cannot be too large or then 2omega signal from mixing will alias
self.d1 = 1
while (self.d1 < 8) and (2 * n_frequency <= 0.8 / self.d1) and (
self.d1 < self.decimation_factor.value):
self.d1 *= 2
n_bandwidth *= 2
n_frequency *= 2
if self.d1 > 1:
# create an anti-aliasing filter
# pass-band to 0.8 * decimation factor; anecdotally single precision needs order <= 4 for stability
b, a = scipy.signal.cheby1(4, 3, 0.8 / self.d1)
b = np.float32(b)
a = np.float32(a)
self.decim_factors[0] = self.d1
self.filters[0] = (b, a)
# store decimated reference for mix down
self.update_references(frequency)
# second stage filter to bring n_bandwidth/2 up
# decimation cannot be too large or will impinge on channel bandwidth (keep n_bandwidth/2 <= 0.8)
self.d2 = 1
while (self.d2 < 8) and (
(self.d1 * self.d2) <
self.decimation_factor.value) and (n_bandwidth / 2 <= 0.8):
self.d2 *= 2
n_bandwidth *= 2
n_frequency *= 2
if self.d2 > 1:
# create an anti-aliasing filter
# pass-band to 0.8 * decimation factor; anecdotally single precision needs order <= 4 for stability
b, a = scipy.signal.cheby1(4, 3, 0.8 / self.d2)
b = np.float32(b)
a = np.float32(a)
self.decim_factors[1] = self.d2
self.filters[1] = (b, a)
# final channel selection filter
if n_bandwidth < 0.1:
raise ValueError(
"Insufficient decimation to achieve stable filter: {}.".format(
n_bandwidth))
b, a = scipy.signal.cheby1(4, 3, n_bandwidth / 2)
b = np.float32(b)
a = np.float32(a)
self.decim_factors[2] = self.decimation_factor.value // (self.d1 *
self.d2)
self.filters[2] = (b, a)
def update_descriptors(self):
logger.debug(
'Updating Channelizer "%s" descriptors based on input descriptor: %s.',
self.name, self.sink.descriptor)
# extract record time sampling
self.time_pts = self.sink.descriptor.axes[-1].points
self.record_length = len(self.time_pts)
self.time_step = self.time_pts[1] - self.time_pts[0]
logger.debug("Channelizer time_step = {}".format(self.time_step))
# We will be decimating along a time axis, which is always
# going to be the last axis given the way we usually take data.
# TODO: perform this function along a named axis rather than a numbered axis
# in case something about this changes.
# update output descriptors
decimated_descriptor = DataStreamDescriptor()
decimated_descriptor.axes = self.sink.descriptor.axes[:]
decimated_descriptor.axes[-1] = deepcopy(self.sink.descriptor.axes[-1])
decimated_descriptor.axes[-1].points = self.sink.descriptor.axes[
-1].points[self.decimation_factor.value -
1::self.decimation_factor.value]
decimated_descriptor.axes[
-1].original_points = decimated_descriptor.axes[-1].points
decimated_descriptor._exp_src = self.sink.descriptor._exp_src
decimated_descriptor.dtype = np.complex64
self.output_descriptor = decimated_descriptor
for os in self.source.output_streams:
os.set_descriptor(decimated_descriptor)
if os.end_connector is not None:
os.end_connector.update_descriptors()
async def process_data(self, data):
# Append any data carried from the last run
if self.carry.size > 0:
data = np.concatenate((self.carry, data))
# This is the largest number of records we can handle
num_records = data.size // self.record_length
# This is the carryover that we'll store until next round.
# If nothing is left then reset the carryover.
remaining_points = data.size % self.record_length
if remaining_points > 0:
if num_records > 0:
self.carry = data[-remaining_points:]
data = data[:-remaining_points]
else:
self.carry = data
else:
self.carry = np.zeros(0, dtype=self.output_descriptor.dtype)
if num_records > 0:
# The records are processed in parallel after being reshaped here
reshaped_data = np.reshape(data, (num_records, self.record_length),
order="C")
# Update demodulation frequency if necessary
if self.follow_axis.value is not "":
freq = self.demod_freqs[(self.idx % self.pts_before_freq_reset)
// self.pts_before_freq_update]
if freq != self.current_freq:
self.update_references(freq)
self.current_freq = freq
self.idx += data.size
# first stage decimating filter
if self.filters[0] is None:
filtered = reshaped_data
else:
stacked_coeffs = np.concatenate(self.filters[0])
# filter
if np.iscomplexobj(reshaped_data):
# TODO: compile complex versions of the IPP functions
filtered_r = np.empty_like(reshaped_data, dtype=np.float32)
filtered_i = np.empty_like(reshaped_data, dtype=np.float32)
libipp.filter_records_iir(
stacked_coeffs, self.filters[0][0].size - 1,
np.ascontiguousarray(
reshaped_data.real.astype(np.float32)),
self.record_length, num_records, filtered_r)
libipp.filter_records_iir(
stacked_coeffs, self.filters[0][0].size - 1,
np.ascontiguousarray(
reshaped_data.imag.astype(np.float32)),
self.record_length, num_records, filtered_i)
filtered = filtered_r + 1j * filtered_i
# decimate
if self.decim_factors[0] > 1:
filtered = filtered[:, ::self.decim_factors[0]]
else:
filtered = np.empty_like(reshaped_data)
libipp.filter_records_iir(stacked_coeffs,
self.filters[0][0].size - 1,
reshaped_data,
self.record_length, num_records,
filtered)
# decimate
if self.decim_factors[0] > 1:
filtered = filtered[:, ::self.decim_factors[0]]
# mix with reference
# keep real and imaginary separate for filtering below
if np.iscomplexobj(reshaped_data):
filtered *= self.reference
filtered_r = filtered.real
filtered_i = filtered.imag
else:
filtered_r = self.reference_r * filtered
filtered_i = self.reference_i * filtered
# channel selection filters
for ct in [1, 2]:
if self.filters[ct] == None:
continue
coeffs = self.filters[ct]
stacked_coeffs = np.concatenate(self.filters[ct])
out_r = np.empty_like(filtered_r).astype(np.float32)
out_i = np.empty_like(filtered_i).astype(np.float32)
libipp.filter_records_iir(
stacked_coeffs, self.filters[ct][0].size - 1,
np.ascontiguousarray(filtered_r.astype(np.float32)),
filtered_r.shape[-1], num_records, out_r)
libipp.filter_records_iir(
stacked_coeffs, self.filters[ct][0].size - 1,
np.ascontiguousarray(filtered_i.astype(np.float32)),
filtered_i.shape[-1], num_records, out_i)
# decimate
if self.decim_factors[ct] > 1:
filtered_r = np.copy(out_r[:, ::self.decim_factors[ct]],
order="C")
filtered_i = np.copy(out_i[:, ::self.decim_factors[ct]],
order="C")
else:
filtered_r = out_r
filtered_i = out_i
filtered = filtered_r + 1j * filtered_i
# recover gain from selecting single sideband
filtered *= 2
# push to ouptut connectors
for os in self.source.output_streams:
await os.push(filtered)
class Plotter(Filter):
sink = InputConnector()
plot_dims = IntParameter(value_range=(0, 1, 2), snap=1,
default=0) # 0 means auto
plot_mode = Parameter(
allowed_values=["real", "imag", "real/imag", "amp/phase", "quad"],
default="quad")
def __init__(self,
*args,
name="",
plot_dims=None,
plot_mode=None,
**plot_args):
super(Plotter, self).__init__(*args, name=name)
if plot_dims:
self.plot_dims.value = plot_dims
if plot_mode:
self.plot_mode.value = plot_mode
self.plot_args = plot_args
self.full_update_interval = 0.5
self.update_interval = 2.0 # slower for partial updates
self.last_update = time.time()
self.last_full_update = time.time()
self.quince_parameters = [self.plot_dims, self.plot_mode]
# This will hold the matplot server
self.plot_server = None
def desc(self):
d = {
'plot_type':
'standard',
'plot_mode':
self.plot_mode.value,
'plot_dims':
int(self.plot_dims.value),
'x_min':
float(min(self.x_values)),
'x_max':
float(max(self.x_values)),
'x_len':
int(self.descriptor.axes[-1].num_points()),
'x_label':
self.axis_label(-1),
'y_label':
"{} ({})".format(self.descriptor.data_name,
self.descriptor.data_unit)
}
if self.plot_dims.value == 2:
d['y_label'] = self.axis_label(-2)
d['data_label'] = "{} ({})".format(self.descriptor.data_name,
self.descriptor.data_unit)
d['y_min'] = float(min(self.y_values))
d['y_max'] = float(max(self.y_values))
d['y_len'] = int(self.descriptor.axes[-2].num_points())
return d
def update_descriptors(self):
logger.debug(
"Updating Plotter %s descriptors based on input descriptor %s",
self.name, self.sink.descriptor)
self.stream = self.sink.input_streams[0]
self.descriptor = self.sink.descriptor
def final_init(self):
# Determine the plot dimensions
if not self.plot_dims.value:
if len(self.descriptor.axes) > 1:
self.plot_dims.value = 2
else:
self.plot_dims.value = 1
# Check the descriptor axes
num_axes = len(self.descriptor.axes)
if self.plot_dims.value > num_axes:
logger.info(
"Cannot plot in more dimensions than there are data axes.")
self.plot_dims.value = num_axes
if self.plot_dims.value == 1:
self.points_before_clear = self.descriptor.axes[-1].num_points()
else:
self.points_before_clear = self.descriptor.axes[-1].num_points(
) * self.descriptor.axes[-2].num_points()
logger.debug("Plot will clear after every %d points.",
self.points_before_clear)
self.x_values = self.descriptor.axes[-1].points
if self.plot_dims.value == 2:
self.y_values = self.descriptor.axes[-2].points
self.plot_buffer = (np.nan * np.ones(self.points_before_clear)).astype(
self.descriptor.dtype)
self.idx = 0
def update(self):
if self.plot_dims.value == 1:
self.plot_server.send(self.name, self.x_values,
self.plot_buffer.copy())
elif self.plot_dims.value == 2:
self.plot_server.send(self.name, self.x_values, self.y_values,
self.plot_buffer.copy())
async def process_data(self, data):
# If we get more than enough data, pause to update the plot if necessary
if (self.idx + data.size) > self.points_before_clear:
spill_over = (self.idx + data.size) % self.points_before_clear
if spill_over == 0:
spill_over = self.points_before_clear
if (time.time() - self.last_full_update >=
self.full_update_interval):
# If we are getting data quickly, then we can afford to wait
# for a full frame before pushing to plot.
self.plot_buffer[self.idx:] = data[:(self.points_before_clear -
self.idx)]
self.update()
self.last_full_update = time.time()
self.plot_buffer[:] = np.nan
self.plot_buffer[:spill_over] = data[-spill_over:]
self.idx = spill_over
else: # just keep trucking
self.plot_buffer[self.idx:self.idx + data.size] = data.flatten()
self.idx += data.size
if (time.time() - max(self.last_full_update, self.last_update) >=
self.update_interval):
self.update()
self.last_update = time.time()
async def on_done(self):
if self.plot_dims.value == 1:
self.plot_server.send(self.name, self.x_values, self.plot_buffer)
elif self.plot_dims.value == 2:
self.plot_server.send(self.name, self.x_values, self.y_values,
self.plot_buffer)
def axis_label(self, index):
unit_str = " ({})".format(self.descriptor.axes[index].unit
) if self.descriptor.axes[index].unit else ''
return self.descriptor.axes[index].name + unit_str
class Plotter(Filter):
sink = InputConnector()
plot_dims = IntParameter(value_range=(0, 1, 2), snap=1,
default=0) # 0 means auto
plot_mode = Parameter(
allowed_values=["real", "imag", "real/imag", "amp/phase", "quad"],
default="quad")
def __init__(self,
*args,
name="",
plot_dims=None,
plot_mode=None,
**plot_args):
super(Plotter, self).__init__(*args, name=name)
if plot_dims:
self.plot_dims.value = plot_dims
if plot_mode:
self.plot_mode.value = plot_mode
self.plot_args = plot_args
self.full_update_interval = 0.5
self.update_interval = 2.0 # slower for partial updates
self.last_update = time.time()
self.last_full_update = time.time()
self._final_buffer = Queue()
self.final_buffer = None
self.quince_parameters = [self.plot_dims, self.plot_mode]
# Unique id for plot server
self.uuid = None
# Should we actually produce plots?
self.do_plotting = True
def send(self, message):
if self.do_plotting:
data = message['data']
msg = message['msg']
name = message['name']
msg_contents = [self.uuid.encode(), msg.encode(), name.encode()]
# We might be sending multiple axes, series, etc.
# Just add them succesively to a multipart message.
for dat in data:
md = dict(
dtype=str(dat.dtype),
shape=dat.shape,
)
msg_contents.extend(
[json.dumps(md).encode(),
np.ascontiguousarray(dat)])
self.socket.send_multipart(msg_contents)
def get_final_plot(self, quad_funcs=[np.abs, np.angle]):
if not self.done.is_set():
raise Exception(
"Cannot get final plot since plotter is not done or was not run."
)
from bqplot import LinearScale, ColorScale, ColorAxis, Axis, Lines, Figure, Tooltip, HeatMap
from bqplot.toolbar import Toolbar
from ipywidgets import VBox, HBox
if self.final_buffer is None:
self.final_buffer = self._final_buffer.get()
if self.plot_dims.value == 2:
raise NotImplementedError(
"2 dimensional get_final_plot not yet implemented.")
elif self.plot_dims.value == 1:
figs = []
for quad_func in quad_funcs:
sx = LinearScale()
sy = LinearScale()
ax = Axis(label=self.axis_label(-1), scale=sx)
ay = Axis(
label=
f"{self.descriptor.data_name} ({self.descriptor.data_unit})",
scale=sy,
orientation='vertical')
line = Lines(x=self.x_values,
y=quad_func(self.final_buffer),
scales={
'x': sx,
'y': sy
})
fig = Figure(marks=[line],
axes=[ax, ay],
title=self.filter_name)
figs.append(fig)
if len(figs) <= 2:
return HBox(figs)
elif len(figs) == 4:
return VBox([HBox([figs[0], figs[1]]), HBox([figs[2], figs[3]])])
elif len(figs) == 3 or len(figs) > 4:
raise Exception("Please use 1, 2, or 4 quadrature functions.")
def desc(self):
d = {
'plot_type':
'standard',
'plot_mode':
self.plot_mode.value,
'plot_dims':
int(self.plot_dims.value),
'x_min':
float(min(self.x_values)),
'x_max':
float(max(self.x_values)),
'x_len':
int(self.descriptor.axes[-1].num_points()),
'x_label':
self.axis_label(-1),
'y_label':
"{} ({})".format(self.descriptor.data_name,
self.descriptor.data_unit)
}
if self.plot_dims.value == 2:
d['y_label'] = self.axis_label(-2)
d['data_label'] = "{} ({})".format(self.descriptor.data_name,
self.descriptor.data_unit)
d['y_min'] = float(min(self.y_values))
d['y_max'] = float(max(self.y_values))
d['y_len'] = int(self.descriptor.axes[-2].num_points())
return d
def set_done(self):
self.send({
'name': self.filter_name,
'data': [np.array([])],
"msg": "done"
})
def set_quit(self):
self.send({
'name': self.filter_name,
'data': [np.array([])],
"msg": "quit"
})
def update_descriptors(self):
logger.debug(
"Updating Plotter %s descriptors based on input descriptor %s",
self.filter_name, self.sink.descriptor)
self.stream = self.sink.input_streams[0]
self.descriptor = self.sink.descriptor
def final_init(self):
# Determine the plot dimensions
if not self.plot_dims.value:
if len(self.descriptor.axes) > 1:
self.plot_dims.value = 2
else:
self.plot_dims.value = 1
# Check the descriptor axes
num_axes = len(self.descriptor.axes)
if self.plot_dims.value > num_axes:
logger.info(
"Cannot plot in more dimensions than there are data axes.")
self.plot_dims.value = num_axes
if self.plot_dims.value == 1:
self.points_before_clear = self.descriptor.axes[-1].num_points()
else:
self.points_before_clear = self.descriptor.axes[-1].num_points(
) * self.descriptor.axes[-2].num_points()
logger.debug("Plot will clear after every %d points.",
self.points_before_clear)
self.x_values = self.descriptor.axes[-1].points
if self.plot_dims.value == 2:
self.y_values = self.descriptor.axes[-2].points
#I'm so sorry everyone. Send Julia
if 'complex' in np.dtype(self.descriptor.dtype).name:
self.plot_buffer = (
np.nan * np.ones(self.points_before_clear) +
1.0j * np.nan * np.ones(self.points_before_clear)).astype(
self.descriptor.dtype)
else:
self.plot_buffer = np.nan * np.ones(self.points_before_clear)
self.idx = 0
def execute_on_run(self):
# Connect to the plot server
if self.do_plotting:
try:
self.context = zmq.Context()
self.socket = self.context.socket(zmq.DEALER)
self.socket.identity = f"Auspex_Experiment_{self.filter_name}_{hex(id(self))}".encode(
)
self.socket.connect("tcp://localhost:7762")
except:
logger.warning(
"Exception occured while contacting the plot server. Is it running?"
)
def update(self):
if self.plot_dims.value == 1:
self.send({
'name': self.filter_name,
'msg': 'data',
'data': [self.x_values, self.plot_buffer.copy()]
})
elif self.plot_dims.value == 2:
self.send({
'name':
self.filter_name,
'msg':
'data',
'data':
[self.x_values, self.y_values,
self.plot_buffer.copy()]
})
def process_data(self, data):
# If we get more than enough data, pause to update the plot if necessary
if (self.idx + data.size) > self.points_before_clear:
spill_over = (self.idx + data.size) % self.points_before_clear
if spill_over == 0:
spill_over = self.points_before_clear
if (time.time() - self.last_full_update >=
self.full_update_interval):
# If we are getting data quickly, then we can afford to wait
# for a full frame before pushing to plot.
self.plot_buffer[self.idx:] = data[:(self.points_before_clear -
self.idx)]
self.update()
self.last_full_update = time.time()
self.plot_buffer[:] = np.nan
self.plot_buffer[:spill_over] = data[-spill_over:]
self.idx = spill_over
else: # just keep trucking
self.plot_buffer[self.idx:self.idx + data.size] = data.flatten()
self.idx += data.size
if (time.time() - max(self.last_full_update, self.last_update) >=
self.update_interval):
self.update()
self.last_update = time.time()
def on_done(self):
if self.plot_dims.value == 1:
self.send({
'name': self.filter_name,
"msg": "data",
'data': [self.x_values, self.plot_buffer.copy()],
})
elif self.plot_dims.value == 2:
self.send({
'name':
self.filter_name,
"msg":
"data",
'data':
[self.x_values, self.y_values,
self.plot_buffer.copy()]
})
self._final_buffer.put(self.plot_buffer)
if self.do_plotting:
self.set_done()
self.socket.close()
self.context.term()
def axis_label(self, index):
unit_str = " ({})".format(self.descriptor.axes[index].unit
) if self.descriptor.axes[index].unit else ''
return self.descriptor.axes[index].name + unit_str
class Channelizer(Filter):
"""Digital demodulation and filtering to select a particular frequency multiplexed channel"""
sink = InputConnector()
source = OutputConnector()
decimation_factor = IntParameter(value_range=(1, 100), default=2, snap=1)
frequency = FloatParameter(value_range=(-5e9, 5e9),
increment=1.0e6,
default=-9e6)
bandwidth = FloatParameter(value_range=(0.00, 100e6),
increment=0.1e6,
default=5e6)
def __init__(self,
frequency=None,
bandwidth=None,
decimation_factor=None,
**kwargs):
super(Channelizer, self).__init__(**kwargs)
if frequency:
self.frequency.value = frequency
if bandwidth:
self.bandwidth.value = bandwidth
if decimation_factor:
self.decimation_factor.value = decimation_factor
self.quince_parameters = [
self.decimation_factor, self.frequency, self.bandwidth
]
def update_descriptors(self):
logger.debug(
'Updating Channelizer "%s" descriptors based on input descriptor: %s.',
self.name, self.sink.descriptor)
# extract record time sampling
time_pts = self.sink.descriptor.axes[-1].points
self.record_length = len(time_pts)
self.time_step = time_pts[1] - time_pts[0]
logger.debug("Channelizer time_step = {}".format(self.time_step))
# convert bandwidth normalized to Nyquist interval
n_bandwidth = self.bandwidth.value * self.time_step * 2
n_frequency = self.frequency.value * self.time_step * 2
# arbitrarily decide on three stage filter pipeline
# 1. first stage decimating filter on real data
# 2. second stage decimating filter on mixed product to boost n_bandwidth
# 3. final channel selecting filter at n_bandwidth/2
# anecdotally don't decimate more than a factor of eight for stability
self.decim_factors = [1] * 3
self.filters = [None] * 3
# first stage decimating filter
# maximize first stage decimation:
# * minimize subsequent stages time taken
# * filter and decimate while signal is still real
# * first stage decimation cannot be too large or then 2omega signal from mixing will alias
d1 = 1
while (d1 < 8) and (2 * n_frequency <=
0.8 / d1) and (d1 < self.decimation_factor.value):
d1 *= 2
n_bandwidth *= 2
n_frequency *= 2
if d1 > 1:
# create an anti-aliasing filter
# pass-band to 0.8 * decimation factor; anecdotally single precision needs order <= 4 for stability
b, a = scipy.signal.cheby1(4, 3, 0.8 / d1)
b = np.float32(b)
a = np.float32(a)
self.decim_factors[0] = d1
self.filters[0] = (b, a)
# store decimated reference for mix down
ref = np.exp(2j * np.pi * self.frequency.value * time_pts[::d1],
dtype=np.complex64)
self.reference_r = np.real(ref)
self.reference_i = np.imag(ref)
# second stage filter to bring n_bandwidth/2 up
# decimation cannot be too large or will impinge on channel bandwidth (keep n_bandwidth/2 <= 0.8)
d2 = 1
while (d2 < 8) and ((d1 * d2) < self.decimation_factor.value) and (
n_bandwidth / 2 <= 0.8):
d2 *= 2
n_bandwidth *= 2
n_frequency *= 2
if d2 > 1:
# create an anti-aliasing filter
# pass-band to 0.8 * decimation factor; anecdotally single precision needs order <= 4 for stability
b, a = scipy.signal.cheby1(4, 3, 0.8 / d2)
b = np.float32(b)
a = np.float32(a)
self.decim_factors[1] = d2
self.filters[1] = (b, a)
# final channel selection filter
if n_bandwidth < 0.1:
raise ValueError(
"Insufficient decimation to achieve stable filter")
b, a = scipy.signal.cheby1(4, 3, n_bandwidth / 2)
b = np.float32(b)
a = np.float32(a)
self.decim_factors[2] = self.decimation_factor.value // (d1 * d2)
self.filters[2] = (b, a)
# update output descriptors
decimated_descriptor = DataStreamDescriptor()
decimated_descriptor.axes = self.sink.descriptor.axes[:]
decimated_descriptor.axes[-1] = deepcopy(self.sink.descriptor.axes[-1])
decimated_descriptor.axes[-1].points = self.sink.descriptor.axes[
-1].points[self.decimation_factor.value -
1::self.decimation_factor.value]
decimated_descriptor.axes[
-1].original_points = decimated_descriptor.axes[-1].points
decimated_descriptor.exp_src = self.sink.descriptor.exp_src
decimated_descriptor.dtype = np.complex64
for os in self.source.output_streams:
os.set_descriptor(decimated_descriptor)
if os.end_connector is not None:
os.end_connector.update_descriptors()
async def process_data(self, data):
# Assume for now we get a integer number of records at a time
# TODO: handle partial records
num_records = data.size // self.record_length
reshaped_data = np.reshape(data, (num_records, self.record_length),
order="C")
# first stage decimating filter
if self.filters[0] is not None:
stacked_coeffs = np.concatenate(self.filters[0])
# filter
filtered = np.empty_like(reshaped_data)
libipp.filter_records_iir(stacked_coeffs,
self.filters[0][0].size - 1,
reshaped_data, self.record_length,
num_records, filtered)
# decimate
if self.decim_factors[0] > 1:
filtered = filtered[:, ::self.decim_factors[0]]
# mix with reference
# keep real and imaginary separate for filtering below
filtered_r = self.reference_r * filtered
filtered_i = self.reference_i * filtered
# channel selection filters
for ct in [1, 2]:
if self.filters[ct] == None:
continue
coeffs = self.filters[ct]
stacked_coeffs = np.concatenate(self.filters[ct])
out_r = np.empty_like(filtered_r)
out_i = np.empty_like(filtered_i)
libipp.filter_records_iir(stacked_coeffs,
self.filters[ct][0].size - 1, filtered_r,
filtered_r.shape[-1], num_records, out_r)
libipp.filter_records_iir(stacked_coeffs,
self.filters[ct][0].size - 1, filtered_i,
filtered_i.shape[-1], num_records, out_i)
# decimate
if self.decim_factors[ct] > 1:
filtered_r = np.copy(out_r[:, ::self.decim_factors[ct]],
order="C")
filtered_i = np.copy(out_i[:, ::self.decim_factors[ct]],
order="C")
else:
filtered_r = out_r
filtered_i = out_i
filtered = filtered_r + 1j * filtered_i
# recover gain from selecting single sideband
filtered *= 2
# push to ouptut connectors
for os in self.source.output_streams:
await os.push(filtered)
