def show_multiple_phasePlot2(
SeqParam_list,
label_list=[],
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
getFig=False):
"""
Plot a single sequence on the Pappu-Das phase plot (diagram of states). This function takes
SequenceParameter objects rather than raw values
INPUT:
--------------------------------------------------------------------------------
SeqParam_list | list of sequence parameter objects
label | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Diagram of states")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
getFig | Returns a matplotlib figure object instead of simply displaying the
| plot on the screen (DEFAULT = False)
OUTPUT:
--------------------------------------------------------------------------------
Nothing, but a plot with multiple points should appear on the screen
"""
# construct the fraction positive and negative vectors
fp_list = []
fn_list = []
for seq in SeqParam_list:
fp_list.append(seq.get_fraction_positive())
fn_list.append(seq.get_fraction_negative())
return plotting.show_multiple_phasePlot(
fp_list,
fn_list,
label_list,
title,
legendOn,
xLim,
yLim,
fontSize,
getFig)
def show_multiple_phasePlot(
fp_list,
fn_list,
label=[""],
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
getFig=False):
"""
Plot multiple sequences on the same Pappu-Das phase plot (diagram of states).
INPUT:
--------------------------------------------------------------------------------
fp_list | Fraction of positive residues
fn_list | Fraction of negative residues
label_list | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Diagram of states")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the x axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
getFig | Returns a matplotlib figure object instead of simply displaying the
| plot on the screen (DEFAULT = False)
OUTPUT:
--------------------------------------------------------------------------------
Nothing, but a plot with multiple points should appear on the screen
"""
return plotting.show_multiple_phasePlot(
fp_list,
fn_list,
label,
title,
legendOn,
xLim,
yLim,
fontSize,
getFig)
def show_multiple_phasePlot2(SeqParam_list,
label_list=[],
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
getFig=False):
"""
Plot a single sequence on the Pappu-Das phase plot (diagram of states). This function takes
SequenceParameter objects rather than raw values
INPUT:
--------------------------------------------------------------------------------
SeqParam_list | list of sequence parameter objects
label | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Diagram of states")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
getFig | Returns a matplotlib figure object instead of simply displaying the
| plot on the screen (DEFAULT = False)
OUTPUT:
--------------------------------------------------------------------------------
Nothing, but a plot with multiple points should appear on the screen
"""
# construct the fraction positive and negative vectors
fp_list = []
fn_list = []
for seq in SeqParam_list:
fp_list.append(seq.get_fraction_positive())
fn_list.append(seq.get_fraction_negative())
return plotting.show_multiple_phasePlot(fp_list, fn_list, label_list,
title, legendOn, xLim, yLim,
fontSize, getFig)
def show_multiple_phasePlot(fp_list,
fn_list,
label=[""],
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
getFig=False):
"""
Plot multiple sequences on the same Pappu-Das phase plot (diagram of states).
INPUT:
--------------------------------------------------------------------------------
fp_list | Fraction of positive residues
fn_list | Fraction of negative residues
label_list | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Diagram of states")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the x axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
getFig | Returns a matplotlib figure object instead of simply displaying the
| plot on the screen (DEFAULT = False)
OUTPUT:
--------------------------------------------------------------------------------
Nothing, but a plot with multiple points should appear on the screen
"""
return plotting.show_multiple_phasePlot(fp_list, fn_list, label, title,
legendOn, xLim, yLim, fontSize,
getFig)
