def make_continuum(script, parameters, project_dict, continfo, comments, flagchannels=False):
width = continfo['width']
widthall = continfo['widthall']
contspws = "contspws = '" + continfo['cont_index'] + "'\n"
spwall = continfo['spwall']
if comments == False:
script = script + com.im_template_header() + sc.finalvis() + sc.plotspw()
else:
script = script + com.im_template() + sc.finalvis() + sc.plotspw()
if not flagchannels:
flagchannels = "flagchannels = '0'\n\n"
splitcomplete = sc.splitcont() + " width=[" + width + "], # widths for all the spws are [" + widthall + "]\n datacolumn='data')\n\n"
else: # use all the spws, not just continuum-dedicated:
flagchannels = "flagchannels = '" + flagchannels + "'\n\n"
contspws = "contspws = '" + spwall + "\n"
splitcomplete = sc.splitcont() + " width=[" + widthall + "], # widths for all the spws are [" + widthall + "]\n datacolumn='data')\n\n"
# 4.4 fixes....
if project_dict['project_type'] == 'Manual':
initweights = "initweights(vis=finalvis,wtmode='weight',dowtsp=True)\n\n"
splitcomplete = sc.splitcont2() + " width=[" + width + "], # widths for all the spws are [" + widthall + "]\n datacolumn='data')\n\n"
checkweights = "plotms(vis=contvis, yaxis='wtsp',xaxis='freq',spw='',antenna='DA42',field='%s')\n" % parameters['scifield0'] # how to get the antenna?
script = script + contspws + initweights + sc.flags() + flagchannels + sc.flagdata() + sc.plotspw() + sc.contvis() + splitcomplete + sc.flagrestore() + checkweights + sc.plotuv()
else:
script = script + contspws + sc.flags() + flagchannels + sc.flagdata() + sc.contvis() + splitcomplete + sc.flagrestore() + sc.plotuv()
return script
def make_continuum(script, parameters, project_dict, continfo, comments, template, flagchannels):
"""Write the make a continuum ms portion of the script"""
width = continfo['width']
widthall = continfo['widthall']
if continfo['cont_index'] == continfo['spwall']:
contspws = "contspws = '" + continfo['cont_index']
elif continfo['cont_index'] == '':
contspws = "contspws = '" + continfo['spwall'] + "' # Because there are no continuum-dedicated spws, all of the spws are included. You will need to flag out line emission before proceeding. \n\n"
width=widthall
else:
contspws = "contspws = '" + continfo['cont_index'] + "'\n"
spwall = continfo['spwall']
if comments == False:
script = script + com.im_template_header() + sc.finalvis() + sc.plotspw() + com.casa_warning()
else:
script = script + com.im_template() + sc.finalvis() + sc.plotspw() + com.casa_warning()
if not flagchannels:
flagchannels = "flagchannels = 'specify_channels_to_flag_here' # Example syntax: '2:1201~2199,3:1201~2199'\n\n"
splitcomplete = sc.splitcont() + " width=[" + width + "], # widths for all the spws are [" + widthall + "]\n datacolumn='data')\n\n"
else: # use all the spws, not just continuum-dedicated:
flagchannels = "\n# Flag the 'line channels'\nflagchannels = '" + flagchannels + "'#In this example , spws 2&3 have a line between channels 1201 and\n\
# 2199 and spectral windows 0 and 1 are line-free.\n\n" #for the future it may be possible to steal hifa_flagchannels output to find these channels
contspws = "contspws = '" + spwall + "'\n"
splitcomplete = sc.splitcont() + " width=[" + widthall + "], # widths for all the spws are [" + widthall + "]\n datacolumn='data')\n\n"
# >= 4.4 fixes....
initweights = "initweights(vis=finalvis,wtmode='weight',dowtsp=True)\n\n"
checkweights = "plotms(vis=contvis, yaxis='wtsp',xaxis='freq',spw='',antenna='DA42',field='%s')\n" % parameters['scifield0'] # how to get the antenna?
casa_version = int(project_dict['casa_version'].replace('.','0')) # replace dots with zeros and convert to int
if project_dict['project_type'] == 'Manual' or casa_version >= 40400: # or casa version >= 4.4.0
splitcomplete = sc.splitcont2() + " width=[" + width + "], # widths for all the spws are [" + widthall + "]\n datacolumn='data')\n\n"
script = script + contspws + initweights + sc.flags() + flagchannels + sc.flagdata() + sc.plotspw() + sc.contvis() + splitcomplete + sc.flagrestore() + checkweights + sc.plotuv()
elif template == True:
script = script + contspws + initweights + sc.flags() + flagchannels + sc.flagdata() + sc.contvis() + com.split_versions() + sc.flagrestore() + checkweights + sc.plotuv()
else:
script = script + contspws + sc.flags() + flagchannels + sc.flagdata() + sc.contvis() + splitcomplete + sc.flagrestore() + sc.plotuv()
return script