def create(cls, params, experiments, reflections=None): ''' Compute or load the profile model. :param params: The input phil parameters :param experiments: The experiment list :param reflections: The reflection table :return: The profile model ''' from dials.interfaces import ProfileModelIface Extension = ProfileModelIface.extension(params.profile.algorithm) Algorithm = Extension().algorithm() create_profile_model = True if hasattr(params, 'create_profile_model'): create_profile_model = params.create_profile_model if (create_profile_model and reflections is not None and "shoebox" in reflections): for expr, indices in reflections.iterate_experiments_and_indices( experiments): expr.profile = Algorithm.create(params.profile, reflections.select(indices), expr.crystal, expr.beam, expr.detector, expr.goniometer, expr.scan) else: for expr in experiments: expr.profile = Algorithm.create(params.profile, None, expr.crystal, expr.beam, expr.detector, expr.goniometer, expr.scan, expr.profile) return experiments
def create(cls, params, experiments, reflections): ''' Compute or load the profile model. :param params: The input phil parameters :param experiments: The experiment list :param reflections: The reflection table :return: The profile model ''' from dials.interfaces import ProfileModelIface Extension = ProfileModelIface.extension(params.profile.algorithm) Algorithm = Extension().algorithm() for expr, indices in reflections.iterate_experiments_and_indices( experiments): expr.profile = Algorithm.create(params.profile, reflections.select(indices), expr.crystal, expr.beam, expr.detector, expr.goniometer, expr.scan) return experiments
def create(cls, params, experiments, reflections): ''' Compute or load the profile model. :param params: The input phil parameters :param experiments: The experiment list :param reflections: The reflection table :return: The profile model ''' from dials.interfaces import ProfileModelIface Extension = ProfileModelIface.extension(params.profile.algorithm) Algorithm = Extension().algorithm() for expr, indices in reflections.iterate_experiments_and_indices(experiments): expr.profile = Algorithm.create( params.profile, reflections.select(indices), expr.crystal, expr.beam, expr.detector, expr.goniometer, expr.scan) return experiments