sys.stdout.write("\nLoading tree... \r")
sys.stdout.flush()
t = Tree(args.filename) #read the input tree.
nbsp = len(t) ## get nb of tips
sys.stdout.write("Loading tree... DONE [the tree has %d tips] \n" % nbsp)
sys.stdout.flush()
##
sys.stdout.write("Storing tree nodes for faster lookup... \r")
sys.stdout.flush()
node2leaves = t.get_cached_content()
sys.stdout.write("Storing tree nodes for faster lookup... DONE\n")
sys.stdout.flush()
t.x = 6.0
t.y = 9.660254 - 10.0
t.alpha = 30.0
t.ray = 30.0
t.zoomview = np.ceil(np.log2(30 / t.ray))
maxZoomView = 0 ##
##FUNCTIONS
#getattr(t,n)
def rad(deg):
return ((deg * np.pi) / 180)
def halfCircle(x, y, r, start, end, nsteps):
rs = np.linspace(start, end, num=nsteps)
xc = x + r * np.cos(rs)
)
prg.close()
sys.exit(1)
the_id_of_the_row = str(a_fr_row['id'])
the_csv_files_as_one_dict[the_id_of_the_row] = {}
for a_key, a_fr_value in a_fr_row.items():
the_csv_files_as_one_dict[the_id_of_the_row][a_key] = {
'FR': a_fr_value
}
for a_key, a_en_value in an_en_row.items():
the_csv_files_as_one_dict[the_id_of_the_row][a_key][
'EN'] = a_en_value
t.x = 0.0
t.y = -15
t.alpha = 90.0
t.ray = 30.0
starti = 1
t.zoomview = 1
#species and node ids
nbsp = len(t)
prg.write('"nbtip": %d,' % (nbsp))
##this will contain the progress made by the code.
spid = starti
ndid = starti + nbsp
rootnb = ndid + 1
maxZoomView = 0
