示例#1
0
 def setUp(self):
     # A fresh module needs to be imported for each test because the
     # registry stores its state in the module which is by default
     # only loaded once.
     self.module = import_fresh_module('skbio.io._registry')
     self.fd1, self.fp1 = mkstemp()
     self.fd2, self.fp2 = mkstemp()
示例#2
0
 def setUp(self):
     # A fresh module needs to be imported for each test because the
     # registry stores its state in the module which is by default
     # only loaded once.
     self.module = import_fresh_module('skbio.io._registry')
     self.fd1, self.fp1 = mkstemp()
     self.fd2, self.fp2 = mkstemp()
 def setUp(self):
     self.module = import_fresh_module('skbio.io._registry')
     self.fd1, self.fp1 = mkstemp()
     self.fd2, self.fp2 = mkstemp()
示例#4
0
# The full license is in the file COPYING.txt, distributed with this software.
# ----------------------------------------------------------------------------

from __future__ import absolute_import, division, print_function
try:
    # future >= 0.12
    from future.backports.test.support import import_fresh_module
except ImportError:
    from future.standard_library.test.support import import_fresh_module

import unittest
import warnings

import numpy as np

cy_subsample = import_fresh_module('skbio.stats._subsample',
                                   fresh=['skbio.stats.__subsample'])
py_subsample = import_fresh_module('skbio.stats._subsample',
                                   blocked=['skbio.stats.__subsample'])


def setup():
    """Ignore warnings during tests."""
    warnings.simplefilter("ignore")


def teardown():
    """Clear the list of warning filters, so that no filters are active."""
    warnings.resetwarnings()


class SubsampleTests(object):
示例#5
0
try:
    # future >= 0.12
    from future.backports.test.support import import_fresh_module
except ImportError:
    from future.standard_library.test.support import import_fresh_module

import unittest
import warnings

import numpy as np
import numpy.testing as npt

from skbio.stats import isubsample


cy_subsample = import_fresh_module('skbio.stats._subsample',
                                   fresh=['skbio.stats.__subsample'])
py_subsample = import_fresh_module('skbio.stats._subsample',
                                   blocked=['skbio.stats.__subsample'])


def setup():
    """Ignore warnings during tests."""
    warnings.simplefilter("ignore")


def teardown():
    """Clear the list of warning filters, so that no filters are active."""
    warnings.resetwarnings()


class SubsampleCountsTests(object):
示例#6
0
# ----------------------------------------------------------------------------

from __future__ import absolute_import, division, print_function
try:
    # future >= 0.12
    from future.backports.test.support import import_fresh_module
except ImportError:
    from future.standard_library.test.support import import_fresh_module

import unittest
import warnings

import numpy as np


cy_subsample = import_fresh_module('skbio.math.subsample',
                                   fresh=['skbio.math._subsample'])
py_subsample = import_fresh_module('skbio.math.subsample',
                                   blocked=['skbio.math._subsample'])


def setup():
    """Ignore warnings during tests."""
    warnings.simplefilter("ignore")


def teardown():
    """Clear the list of warning filters, so that no filters are active."""
    warnings.resetwarnings()


class SubsampleTests(object):