def test_cat_to_file():
target = results_dir + "/catted.fastq"
reads_1 = files.open(testfiles["reads_1.fastq"])
reads_2 = files.open(testfiles["reads_2.fastq"])
out = gt.OutputFile(target)
gt.cat([reads_1, reads_2]).write_stream(out)
c = 0
ids = []
with open(target) as f:
for l in f:
if c % 4 == 0:
ids.append(l.strip())
c += 1
assert len(set(ids)) == 20000
def test_cat_to_file():
target = results_dir + "/catted.fastq"
reads_1 = files.open(testfiles["reads_1.fastq"])
reads_2 = files.open(testfiles["reads_2.fastq"])
out = gt.OutputFile(target)
gt.cat([reads_1, reads_2]).write_stream(out)
c = 0
ids = []
with open(target) as f:
for l in f:
if c % 4 == 0:
ids.append(l.strip())
c += 1
assert len(set(ids)) == 20000
def cat(reads):
return gt.cat(reads)
def cat(reads):
return gt.cat(reads)