def cmd():
with open(output_filename, 'a') as fp:
for group in parsers.hmmscan_to_df_iter(input_filename):
gff_group = gff.hmmscan_to_gff3_df(group, 'dammit.hmmscan',
database)
gff.write_gff3_df(gff_group, fp)
def cmd():
with open(output_filename, 'a') as fp:
for group in pd.read_csv(input_filename, chunksize=10000):
gff_group = gff.hmmscan_to_gff3_df(group, database=database)
gff.write_gff3_df(gff_group, fp)
def cmd():
with open(output_filename, 'a') as fp:
for group in pd.read_csv(input_filename, chunksize=10000):
gff_group = gff.hmmscan_to_gff3_df(group, database=database)
gff.write_gff3_df(gff_group, fp)
def cmd():
with open(output_filename, 'a') as fp:
for group in parsers.hmmscan_to_df_iter(input_filename):
gff_group = gff.hmmscan_to_gff3_df(group, 'dammit.hmmscan',
database)
gff.write_gff3_df(gff_group, fp)
