def __init__(self, filename):
DetectorImageBase.__init__(self, filename)
try:
from cbflib_adaptbx import CBFAdaptor # optional package
self.adaptor = CBFAdaptor(filename)
# for testing only:
'''
self.adaptor.read_header()
print " size1:", self.adaptor.size1()
print " size2:", self.adaptor.size2()
print " overload:", self.adaptor.overload()
print "wavelength:", self.adaptor.wavelength()
print " distance:", self.adaptor.distance()
print "pixel size:", self.adaptor.pixel_size()
print " beamx:", self.adaptor.beam_index_slow*self.adaptor.pixel_size()
print " beamy:", self.adaptor.beam_index_fast*self.adaptor.pixel_size()
print " osc_start:", self.adaptor.osc_start()
print " osc_range:", self.adaptor.osc_range()
print self.adaptor.raster_description()
flags = self.adaptor.transform_flags()
print flags.transpose, flags.reverse_slow, flags.reverse_fast
'''
except Exception:
from iotbx.detectors.marIP import NullAdaptor
self.adaptor = NullAdaptor()
self.vendortype = "CBF"
self.readHeader()
try:
self.vendor_specific_null_value = int(
self.adaptor.undefined_value())
except RuntimeError as e:
self.vendor_specific_null_value = 0
def __init__(self, filename, index=0):
DetectorImageBase.__init__(self, filename)
self.vendortype = "EigerX"
self.supports_multiple_images = True
self.img_number = index # 0-indexed to clients, internally 1-indexed
if self.img_number == None: self.img_number = 0
self.vendor_specific_null_value = -1
def __init__(self,filename):
DetectorImageBase.__init__(self,filename)
try:
from cbflib_adaptbx import CBFAdaptor # optional package
self.adaptor = CBFAdaptor(filename)
# for testing only:
'''
self.adaptor.read_header()
print " size1:", self.adaptor.size1()
print " size2:", self.adaptor.size2()
print " overload:", self.adaptor.overload()
print "wavelength:", self.adaptor.wavelength()
print " distance:", self.adaptor.distance()
print "pixel size:", self.adaptor.pixel_size()
print " beamx:", self.adaptor.beam_index_slow*self.adaptor.pixel_size()
print " beamy:", self.adaptor.beam_index_fast*self.adaptor.pixel_size()
print " osc_start:", self.adaptor.osc_start()
print " osc_range:", self.adaptor.osc_range()
print self.adaptor.raster_description()
flags = self.adaptor.transform_flags()
print flags.transpose, flags.reverse_slow, flags.reverse_fast
'''
except Exception:
from iotbx.detectors.marIP import NullAdaptor
self.adaptor = NullAdaptor()
self.vendortype = "CBF"
self.readHeader()
self.vendor_specific_null_value = int(self.adaptor.undefined_value())
def __init__(self,filename):
DetectorImageBase.__init__(self,filename)
try:
from cbflib_adaptbx import Mar345Adaptor # optional package
self.adaptor = Mar345Adaptor(filename)
except Exception:
self.adaptor = NullAdaptor()
self.vendortype = "MARIP"
def __init__(self, filename):
DetectorImageBase.__init__(self, filename)
try:
from cbflib_adaptbx import Mar345Adaptor # optional package
self.adaptor = Mar345Adaptor(filename)
except Exception:
self.adaptor = NullAdaptor()
self.vendortype = "MARIP"
def __init__(self,filename):
DetectorImageBase.__init__(self,filename)
self.vendortype = "MARCCD"
byte_order = str(open(self.filename,"rb").read(2))
if byte_order == 'II':
self.endian = 0
else:
self.endian = 1
assert not self.isCompressed()
def __init__(self, filename):
DetectorImageBase.__init__(self, filename)
self.vendortype = "MARCCD"
with open(self.filename, "rb") as fh:
byte_order = fh.read(2)
if byte_order == b"II":
self.endian = 0
else:
self.endian = 1
assert not self.isCompressed()
def __init__(self, file_name):
DetectorImageBase.__init__(self, file_name)
raw = open(file_name, "rb").read()
self.binary_sections = get_binary_sections(raw)
self.header_sections = get_header_sections(raw, self.binary_sections)
assert len(self.binary_sections)==1
cif = iotbx.cif.fast_reader(input_string=self.header_sections)
self.cif_model = cif.model()
im1 = self.cif_model["image_1"]
self.vendortype = "CBF"
self.readHeader()
def __init__(self, file_name):
DetectorImageBase.__init__(self, file_name)
raw = open(file_name, "rb").read()
self.binary_sections = get_binary_sections(raw)
self.header_sections = get_header_sections(raw, self.binary_sections)
assert len(self.binary_sections) == 1
cif = iotbx.cif.fast_reader(input_string=self.header_sections)
self.cif_model = cif.model()
im1 = self.cif_model["image_1"]
self.vendortype = "CBF"
self.readHeader()
def __init__(self, filename):
"""Initialize the instance"""
# Make sure the image name is a string for iotbx
try:
image_str = unicodedata.normalize("NFKD", filename).encode("ascii", "ignore")
except TypeError:
image_str = filename
DetectorImageBase.__init__(self, image_str)
# self.vendortype = "MARCCD"
byte_order = str(open(self.filename, "rb").read(2))
if byte_order == "II":
self.endian = 0
else:
self.endian = 1
assert not self.isCompressed()
def __init__(self,filename): DetectorImageBase.__init__(self,filename) self.vendortype = "Eiger" self.vendor_specific_null_value = -1
def __init__(self,filename): DetectorImageBase.__init__(self,filename) self.vendortype = "ADSC"
def __init__(self,filename): DetectorImageBase.__init__(self,filename) self.vendortype = "ADSC" self.open_file = open # default: open files with built-in, unless otherwise instructed by dxtbx format
def __init__(self, filename):
DetectorImageBase.__init__(self, filename)
self.vendortype = "Pilatus"
self.vendor_specific_null_value = -1
def __init__(self,filename): DetectorImageBase.__init__(self,filename) Raxis.__init__(self,filename) self.vendortype = "RAXIS"
def __init__(self, filename):
DetectorImageBase.__init__(self, filename)
self.vendortype = "SMV(Generic)"
def __init__(self,filename): DetectorImageBase.__init__(self,filename) self.filename = filename self.vendortype = "MacScience" self.getImageSize()
def __init__(self,filename): DetectorImageBase.__init__(self,filename) self.vendortype = "SMV(Generic)"
def __init__(self,filename): DetectorImageBase.__init__(self,filename) self.vendortype = "EIGER" self.supports_multiple_images = True self.img_number = 0 # 0-indexed to clients, internally 1-indexed
def __init__(self,filename): DetectorImageBase.__init__(self,filename) self.vendortype = "RigakuSaturn"
def __init__(self,filename): DetectorImageBase.__init__(self,filename) self.filename = filename self.vendortype = "MacScience" self.getImageSize()
def __init__(self, filename, source_data=None):
DetectorImageBase.__init__(self, filename)
self.vendortype = "npy_raw"
self.source_data = source_data
def __init__(self,filename): DetectorImageBase.__init__(self,filename) self.vendortype = "RigakuSaturn"
def __init__(self, filename):
DetectorImageBase.__init__(self, filename)
self.vendortype = "Hamamatsu"
def __init__(self, filename, source_data = None): DetectorImageBase.__init__(self, filename) self.vendortype = "npy_raw" self.source_data = source_data
def __init__(self, filename):
DetectorImageBase.__init__(self, filename)
Raxis.__init__(self, filename)
self.vendortype = "RAXIS"
def __init__(self, filename, source_data=None):
DetectorImageBase.__init__(self, filename)
self.vendortype = "npy_raw"
self.source_data = image_dict_to_unicode(source_data)