def get_transcript_dict(gp_path): """ Loads the reference genePred as Transcript objects """ transcripts = seq_lib.get_gene_pred_transcripts(gp_path) transcript_dict = seq_lib.transcript_list_to_dict(transcripts) return transcript_dict
def getAnnotationDict(self): self.annotations = seq_lib.get_gene_pred_transcripts(self.annotationGp) self.annotationDict = seq_lib.transcript_list_to_dict( self.annotations, noDuplicates=True)
def getTranscriptDict(self): self.transcripts = seq_lib.get_gene_pred_transcripts(self.targetGp) self.transcriptDict = seq_lib.transcript_list_to_dict( self.transcripts, noDuplicates=True)
def getAugustusTranscriptDict(self): self.augustusTranscripts = seq_lib.get_gene_pred_transcripts( self.augustusGp) self.augustusTranscriptDict = seq_lib.transcript_list_to_dict( self.augustusTranscripts, noDuplicates=True)
def getAugustusTranscriptDict(self): self.augustusTranscripts = seq_lib.get_gene_pred_transcripts(self.augustusGp) self.augustusTranscriptDict = seq_lib.transcript_list_to_dict(self.augustusTranscripts, noDuplicates=True)
def getAnnotationDict(self): self.annotations = seq_lib.get_gene_pred_transcripts(self.annotationGp) self.annotationDict = seq_lib.transcript_list_to_dict(self.annotations, noDuplicates=True)
def getTranscriptDict(self): self.transcripts = seq_lib.get_gene_pred_transcripts(self.targetGp) self.transcriptDict = seq_lib.transcript_list_to_dict(self.transcripts, noDuplicates=True)