def execute(self, config: ConfigCmd):
self._config = config
self.status = Cmd.STATUS_INPROC
files = config.get_files()
target = files.get_study_path()
post_path = files.get_post_path()
if not post_path.exists():
print('librec-auto: post directory missing. Creating. ', target)
os.makedirs(str(post_path))
post_elems = config.get_xml().xpath(self.POST_ELEM_XPATH)
for post_elem in post_elems:
param_spec = utils.create_param_spec(post_elem)
param_spec = self.handle_password(post_elem, config, param_spec)
script_path = utils.get_script_path(post_elem, 'post')
exec_path = config.get_files().get_study_path()
proc_spec = [
sys.executable,
script_path.absolute().as_posix(),
self._config.get_files().get_config_file_path().name
] + param_spec
print(f'librec-auto: Running post-processing script {proc_spec}')
subprocess.call(proc_spec, cwd=str(exec_path.absolute()))
def execute(self, config: ConfigCmd):
self._config = config
self.status = Cmd.STATUS_INPROC
files = config.get_files()
StudyStatus(config)
target = files.get_study_path()
post_path = files.get_post_path()
if not post_path.exists():
print('librec-auto: post directory missing. Creating. ', target)
os.makedirs(str(post_path))
post_elems = config.get_xml().xpath(self.POST_ELEM_XPATH)
for post_elem in post_elems:
param_spec = utils.create_param_spec(post_elem)
param_spec = self.handle_password(post_elem, config, param_spec)
script_path = utils.get_script_path(post_elem, 'post')
exec_path = config.get_files().get_study_path()
proc_spec = [
sys.executable,
script_path.absolute().as_posix(),
self._config.get_files().get_config_file_path().name
] + param_spec
print(f'librec-auto: Running post-processing script {proc_spec}')
# replace with safe_run_subprocess()
# subprocess.call(proc_spec, cwd=str(exec_path.absolute()))
run_script = safe_run_subprocess(proc_spec,
str(exec_path.absolute()))
script_name = re.split(r'/', str(script_path))[-1]
if run_script != 0:
self.status = Cmd.STATUS_ERROR
raise ScriptFailureException(
script_name,
f"Post processing script at {str(script_path)} failed.",
run_script)
self.status = Cmd.STATUS_COMPLETE