Python SBMLlayout.setNodeFontColor示例

示例#1

sl._describeModel()

sl.drawNetwork()
#r = Render(model_file, sl.layout_number)
#r._describeRenderInfo()

#print("render: ", type(r))
#print("num layouts: ", r.layout_plugin.getNumLayouts())

#sl._applyRenderInformation(None)

#a0e0a030

reactionIds = sl.getReactionIds()

sl.setNodeColor("all", "#0000ff30")
sl.setReactionColor("all", "blue")

sl.setNodeEdgeColor("F", "blue")
sl.setNodeFillColor("F", "lightgreen")
sl.setNodeFontFamily("ABCDEFG", "Elephant")
sl.setNodeFontColor("ABCDEFG", "green")
sl.setNodeEdgeColor("ABCDEFG", "blue")

for reactionId in reactionIds:
    sl.setReactionCurveWidth(reactionId, 1)
    sl.setReactionFillColor(reactionId, "red")

sl.drawNetwork(save_file_name="C:\\tmp\\larger_pathway_set_changes_tight.png",
               bbox_inches="tight")

示例#2

文件： demo_copasi.py 项目： nrhawkins/libsbml-draw

sl = SBMLlayout(model_file)

sl._describeModel()

## Draw Original copasi.xml
sl.drawNetwork()

print("node ids: ", sl.getNodeIds())
print("reaction ids: ", sl.getReactionIds())

sl.setNodeFontStyle("S1", "italic")
sl.setNodeColor("S1", "lightpink")
sl.setNodeColor("S2", "lightgreen")

sl.setNodeFontColor("S1", "white")
sl.setNodeFontStyle("S1", "italic")

sl.setReactionColor("_J0", "blue")
sl.setReactionCurveWidth("_J0", 1)

# Draw Pink and Green 
sl.drawNetwork()

new_model_file = model_dir + "render_sbml_pink_green.xml"
print("new model file: ", new_model_file)

sl.addRenderInformation()

sl.writeSBMLFile(new_model_file)

示例#3

from pathlib import Path
import pkg_resources

from libsbml_draw.model.sbml_layout import SBMLlayout

model_file_name = "model.xml"

model_file = Path(
    pkg_resources.resource_filename("libsbml_draw",
                                    "model/data/" + model_file_name))

s = SBMLlayout(str(model_file))

# s._describeModel()

s.setNodeFontSize('all', 15)
s.setReactionCurveWidth('all', 3)
s.setNodeColor('all', 'red')
s.setNodeFontColor('all', 'white')

s.drawNetwork()

s.regenerateLayout()

s.drawNetwork()