def test_filter_raises_error_on_empty_filtered_result(self):
''' This should raise an AssertionError because no reads will be left after that quality filter.'''
with self.assertRaises(AssertionError):
write_filtered(self.inputfn, 65, True)
def test_filter_raises_error_on_empty_filtered_result(self):
''' This should raise an AssertionError because no reads will be left after that quality filter.'''
with self.assertRaises(AssertionError):
write_filtered(self.inputfn, 65, True)
def test_write_filtered_unfiltered(self):
''' input and output fastq files should be the same if filters make everything pass '''
write_filtered(self.inputfn, 0, False, outdir=self.outdir)
self.seqs_equal(self.inputfn, self.actualfn, format='fastq')
def test_write_filtered_unfiltered(self):
''' input and output fastq files should be the same if filters make everything pass '''
write_filtered(self.inputfn, 0, False, outdir=self.outdir)
self.seqs_equal(self.inputfn, self.actualfn, format='fastq')
