def validation_step(sess,
val_dict,
config,
log,
val_images=False,
val_labels=False,
val_batch_idx=False,
val_batches=False):
it_val_acc = np.asarray([])
it_val_loss = np.asarray([])
start_time = time.time()
if val_batch_idx:
shuff_val_batch_idx = val_batch_idx[np.random.permutation(
len(val_batch_idx))]
for num_vals in range(config.num_validation_evals):
# Validation accuracy as the average of n batches
if val_images:
it_idx = shuff_val_batch_idx == num_vals
it_ims = val_images[it_idx]
it_labs = val_labels[it_idx]
if isinstance(it_labs[0], basestring):
it_labs = np.asarray(
[data_to_tfrecords.load_image(im) for im in it_labs])
feed_dict = {
val_dict['val_images']: it_ims,
val_dict['val_labels']: it_labs
}
it_val_dict = sess.run(val_dict, feed_dict=feed_dict)
else:
it_val_dict = sess.run(val_dict)
it_val_acc = np.append(it_val_acc, it_val_dict['val_accuracy'])
it_val_loss = np.append(it_val_loss, it_val_dict['val_loss'])
val_acc = it_val_acc.mean()
val_lo = it_val_loss.mean()
duration = time.time() - start_time
return val_acc, val_lo, it_val_dict, duration
def validation_step(sess,
val_dict,
config,
log,
sequential=False,
dict_image_key='val_images',
dict_label_key='val_labels',
eval_score_key='val_score',
eval_loss_key='val_loss',
map_im_key='val_images',
map_log_key='val_logits',
map_lab_key='val_labels',
debug_tilts=True,
val_images=False,
val_labels=False,
val_batch_idx=None,
val_batches=False):
it_val_score = np.asarray([])
it_val_loss = np.asarray([])
start_time = time.time()
if debug_tilts:
jacs = []
tilt_meta = np.load(
'/media/data_cifs/tilt_illusion/test/metadata/filtered_te.npy')
save_val_dicts = (hasattr(config, 'get_map') and config.get_map) or \
(hasattr(config, 'all_results') and config.all_results)
if save_val_dicts:
it_val_dicts = []
for idx in range(config.validation_steps):
# Validation accuracy as the average of n batches
file_paths = '' # Init empty full path image info for tfrecords
if val_batch_idx is not None:
if not sequential:
it_val_batch_idx = val_batch_idx[np.random.permutation(
len(val_batch_idx))]
val_step = np.random.randint(low=0, high=val_batch_idx.max())
else:
it_val_batch_idx = val_batch_idx
val_step = idx
it_idx = it_val_batch_idx == val_step
it_ims = val_images[it_idx]
# if debug_tilts and it_ims[0].split(os.path.sep)[-1] in tilt_meta[:, 1]:
# jidx = np.where(it_ims[0].split(os.path.sep)[-1] == tilt_meta[:, 1])[0][0]
# pim = data_to_tfrecords.load_image(it_ims[0])
# rot = rotate(pim, float(tilt_meta[jidx][4]))
# fig = plt.figure()
# plt.subplot(121)
# plt.imshow(pim)
# plt.subplot(122)
# plt.imshow(rot)
# plt.show()
# plt.close(fig)
it_labs = val_labels[it_idx]
if isinstance(it_ims[0], basestring):
file_paths = np.copy(it_ims)
it_ims = np.asarray(
[data_to_tfrecords.load_image(im) for im in it_ims])
if isinstance(it_labs[0], basestring):
it_labs = np.asarray(
[data_to_tfrecords.load_image(im) for im in it_labs])
# if debug_tilts and val_images[it_idx][0].split(os.path.sep)[-1] in tilt_meta[:, 1]:
# jidx = np.where(val_images[it_idx][0].split(os.path.sep)[-1] == tilt_meta[:, 1])[0][0]
# it_ims[0] = rotate(it_ims[0], float(tilt_meta[jidx][4]))
feed_dict = {
val_dict[dict_image_key]: it_ims,
val_dict[dict_label_key]: it_labs
}
it_val_dict = sess.run(val_dict, feed_dict=feed_dict)
else:
it_val_dict = sess.run(val_dict)
try:
if debug_tilts and val_images[it_idx][0].split(
os.path.sep)[-1] in tilt_meta[:, 1]:
jidx = np.where(val_images[it_idx][0].split(os.path.sep)[-1] ==
tilt_meta[:, 1])[0][0]
# jacs.append(rotate(it_val_dict['test_jacobian'].squeeze(), float(tilt_meta[jidx][4])))
jacs.append(it_val_dict['test_jacobian'].squeeze())
except:
import ipdb
ipdb.set_trace()
if hasattr(config, 'plot_recurrence') and config.plot_recurrence:
norms = tf_fun.visualize_recurrence(
idx=idx,
image=it_ims,
label=it_labs,
logits=it_val_dict['test_logits'],
h2s=it_val_dict['h2_list'],
ff=it_val_dict['ff'],
config=config,
debug=False)
else:
norms = -1
# Patch for accuracy... TODO: Fix the TF op
# if config.score_function == 'accuracy':
# preds = np.argsort(it_val_dict['val_logits'], -1)[:, -1]
# it_val_score = np.mean(
# preds == it_val_dict['val_labels'].astype(float))
it_val_score = np.append(it_val_score, it_val_dict[eval_score_key])
it_val_loss = np.append(it_val_loss, it_val_dict[eval_loss_key])
if save_val_dicts:
if map_im_key not in it_val_dict:
map_im_key = map_im_key.replace('proc_', '')
map_log_key = map_log_key.replace('proc_', '')
map_lab_key = map_lab_key.replace('proc_', '')
trim_dict = {
'images': it_val_dict[map_im_key], # im_key='val_images'],
'logits': it_val_dict[map_log_key], # log_key='val_logits'],
'labels': it_val_dict[map_lab_key], # lab_key='val_labels']
'image_paths': file_paths,
'norms': norms
}
it_val_dicts += [trim_dict]
val_score = it_val_score.mean()
val_lo = it_val_loss.mean()
duration = time.time() - start_time
import ipdb
ipdb.set_trace()
jacs = np.array(jacs)
if save_val_dicts:
it_val_dict = it_val_dicts
return val_score, val_lo, it_val_dict, duration
def training_loop(config,
coord,
sess,
summary_op,
summary_writer,
saver,
restore_saver,
threads,
directories,
train_dict,
val_dict,
exp_label,
num_params,
use_db,
log,
placeholders=False,
checkpoint=None,
save_weights=False,
save_checkpoints=False,
save_activities=False,
save_gradients=False):
"""Run the model training loop."""
if checkpoint is not None:
restore_saver.restore(sess, checkpoint)
print 'Restored checkpoint %s' % checkpoint
if not hasattr(config, 'early_stop'):
config.early_stop = np.inf
val_perf = np.asarray([np.inf])
step = 0
best_val_dict = None
if save_weights:
try:
weight_dict = {v.name: v for v in tf.trainable_variables()}
val_dict = dict(val_dict, **weight_dict)
except Exception:
raise RuntimeError('Failed to find weights to save.')
else:
weight_dict = None
if hasattr(config, 'early_stop'):
it_early_stop = config.early_stop
else:
it_early_stop = np.inf
if placeholders:
train_images = placeholders['train']['images']
val_images = placeholders['val']['images']
train_labels = placeholders['train']['labels']
val_labels = placeholders['val']['labels']
train_batches = len(train_images) / config.train_batch_size
train_batch_idx = np.arange(train_batches).reshape(-1, 1).repeat(
config.train_batch_size)
train_images = train_images[:len(train_batch_idx)]
train_labels = train_labels[:len(train_batch_idx)]
val_batches = len(val_images) / config.val_batch_size
val_batch_idx = np.arange(val_batches).reshape(-1, 1).repeat(
config.val_batch_size)
val_images = val_images[:len(val_batch_idx)]
val_labels = val_labels[:len(val_batch_idx)]
# Check that labels are appropriate shape
tf_label_shape = train_dict['train_labels'].get_shape().as_list()
np_label_shape = train_labels.shape
if len(tf_label_shape) == 2 and len(np_label_shape) == 1:
train_labels = train_labels[..., None]
val_labels = val_labels[..., None]
elif len(tf_label_shape) == len(np_label_shape):
pass
else:
raise RuntimeError('Mismatch label shape np: %s vs. tf: %s' %
(np_label_shape, tf_label_shape))
# Start training
for epoch in tqdm(range(config.epochs),
desc='Epoch',
total=config.epochs):
for train_batch in range(train_batches):
data_idx = train_batch_idx == train_batch
it_train_images = train_images[data_idx]
it_train_labels = train_labels[data_idx]
if isinstance(it_train_images[0], basestring):
it_train_images = np.asarray([
data_to_tfrecords.load_image(im)
for im in it_train_images
])
feed_dict = {
train_dict['train_images']: it_train_images,
train_dict['train_labels']: it_train_labels
}
(train_score, train_loss, it_train_dict,
timer) = training_step(sess=sess,
train_dict=train_dict,
feed_dict=feed_dict)
if step % config.validation_period == 0:
val_score, val_lo, it_val_dict, duration = validation_step(
sess=sess,
val_dict=val_dict,
config=config,
log=log,
val_images=val_images,
val_labels=val_labels,
val_batch_idx=val_batch_idx,
val_batches=val_batches)
# Save progress and important data
try:
val_check = np.where(val_lo < val_perf)[0]
if not len(val_check):
it_early_stop -= 1
print 'Deducted from early stop count.'
else:
it_early_stop = config.early_stop
best_val_dict = it_val_dict
print 'Reset early stop count.'
if it_early_stop <= 0:
print 'Early stop triggered. Ending early.'
print 'Best validation loss: %s' % np.min(val_perf)
return
save_progress(config=config,
val_check=val_check,
weight_dict=weight_dict,
it_val_dict=it_val_dict,
exp_label=exp_label,
step=step,
directories=directories,
sess=sess,
saver=saver,
val_score=val_score,
val_loss=val_lo,
train_score=train_score,
train_loss=train_loss,
timer=duration,
num_params=num_params,
log=log,
summary_op=summary_op,
summary_writer=summary_writer,
save_activities=save_activities,
save_gradients=save_gradients,
save_checkpoints=save_checkpoints)
except Exception as e:
log.info('Failed to save checkpoint: %s' % e)
# Training status and validation accuracy
val_status(log=log,
dt=datetime.now(),
step=step,
train_loss=train_loss,
rate=config.val_batch_size / duration,
timer=float(duration),
score_function=config.score_function,
train_score=train_score,
val_score=val_score,
val_loss=val_lo,
best_val_loss=np.min(val_perf),
summary_dir=directories['summaries'])
else:
# Training status
train_status(log=log,
dt=datetime.now(),
step=step,
train_loss=train_loss,
rate=config.val_batch_size / duration,
timer=float(duration),
lr=it_train_dict['lr'],
score_function=config.score_function,
train_score=train_score)
# End iteration
val_perf = np.concatenate([val_perf, [val_lo]])
step += 1
else:
try:
while not coord.should_stop():
(train_score, train_loss, it_train_dict,
duration) = training_step(sess=sess,
config=config,
train_dict=train_dict)
io_start_time = time.time()
if step % config.validation_period == 0:
val_score, val_lo, it_val_dict, duration = validation_step(
sess=sess, val_dict=val_dict, config=config, log=log)
# Save progress and important data
try:
val_check = np.where(val_lo < val_perf)[0]
if not len(val_check):
it_early_stop -= 1
print('Deducted from early stop count (%s/ %s).' %
(it_early_stop, config.early_stop))
else:
it_early_stop = config.early_stop
best_val_dict = it_val_dict
print('Reset early stop count (%s/ %s).' %
(it_early_stop, config.early_stop))
if it_early_stop <= 0:
print 'Early stop triggered. Ending early.'
print 'Best validation loss: %s' % np.min(val_perf)
break
val_perf = save_progress(
config=config,
val_check=val_check,
weight_dict=weight_dict,
it_val_dict=it_val_dict,
exp_label=exp_label,
step=step,
directories=directories,
sess=sess,
saver=saver,
val_score=val_score,
val_loss=val_lo,
val_perf=val_perf,
train_score=train_score,
train_loss=train_loss,
timer=duration,
num_params=num_params,
log=log,
use_db=use_db,
summary_op=summary_op,
summary_writer=summary_writer,
save_activities=save_activities,
save_gradients=save_gradients,
save_checkpoints=save_checkpoints)
except Exception as e:
log.info('Failed to save checkpoint: %s' % e)
# Training status and validation accuracy
val_status(log=log,
dt=datetime.now(),
step=step,
train_loss=train_loss,
rate=config.val_batch_size / duration,
timer=float(duration),
score_function=config.score_function,
train_score=train_score,
val_score=val_score,
val_loss=val_lo,
best_val_loss=np.min(val_perf),
summary_dir=directories['summaries'])
else:
# Training status
io_duration = time.time() - io_start_time
train_status(log=log,
dt=datetime.now(),
step=step,
train_loss=train_loss,
rate=config.val_batch_size / duration,
timer=float(duration),
io_timer=float(io_duration),
lr=it_train_dict['lr'],
score_function=config.score_function,
train_score=train_score)
# End iteration
step += 1
except tf.errors.OutOfRangeError:
log.info('Done training for %d epochs, %d steps.' %
(config.epochs, step))
log.info('Saved to: %s' % directories['checkpoints'])
finally:
coord.request_stop()
coord.join(threads)
sess.close()
try:
print 'Best %s loss: %s' % (config.val_loss_function, val_perf[0])
if hasattr(config, 'get_map') and config.get_map:
tf_fun.calculate_map(best_val_dict, exp_label, config)
except:
print 'Best %s loss: %s' % val_perf[0]
return
def training_loop(
config,
coord,
sess,
summary_op,
summary_writer,
saver,
restore_saver,
threads,
directories,
train_dict,
val_dict,
exp_label,
num_params,
use_db,
log,
placeholders=False,
checkpoint=None,
save_weights=False,
save_checkpoints=False,
save_activities=False,
save_gradients=False):
"""Run the model training loop."""
if checkpoint is not None:
restore_saver.restore(sess, checkpoint)
print 'Restored checkpoint %s' % checkpoint
if not hasattr(config, 'early_stop'):
config.early_stop = np.inf
val_perf = np.asarray([np.inf])
step = 0
best_val_dict = None
if save_weights:
try:
weight_dict = {v.name: v for v in tf.trainable_variables()}
val_dict = dict(
val_dict,
**weight_dict)
except Exception:
raise RuntimeError('Failed to find weights to save.')
else:
weight_dict = None
if hasattr(config, 'early_stop'):
it_early_stop = config.early_stop
else:
it_early_stop = np.inf
if hasattr(config, "adaptive_train"):
adaptive_train = config.adaptive_train
else:
adaptive_train = False
if placeholders:
train_images = placeholders['train']['images']
val_images = placeholders['val']['images']
train_labels = placeholders['train']['labels']
val_labels = placeholders['val']['labels']
train_batches = len(train_images) / config.train_batch_size
train_batch_idx = np.arange(
train_batches).reshape(-1, 1).repeat(
config.train_batch_size)
train_images = train_images[:len(train_batch_idx)]
train_labels = train_labels[:len(train_batch_idx)]
val_batches = len(val_images) / config.val_batch_size
val_batch_idx = np.arange(
val_batches).reshape(-1, 1).repeat(
config.val_batch_size)
val_images = val_images[:len(val_batch_idx)]
val_labels = val_labels[:len(val_batch_idx)]
# Check that labels are appropriate shape
tf_label_shape = train_dict['train_labels'].get_shape().as_list()
np_label_shape = train_labels.shape
if len(tf_label_shape) == 2 and len(np_label_shape) == 1:
train_labels = train_labels[..., None]
val_labels = val_labels[..., None]
elif len(tf_label_shape) == len(np_label_shape):
pass
else:
raise RuntimeError(
'Mismatch label shape np: %s vs. tf: %s' % (
np_label_shape,
tf_label_shape))
# Start training
train_losses = []
train_logits = []
for epoch in tqdm(
range(config.epochs),
desc='Epoch',
total=config.epochs):
for train_batch in range(train_batches):
io_start_time = time.time()
data_idx = train_batch_idx == train_batch
it_train_images = train_images[data_idx]
it_train_labels = train_labels[data_idx]
if isinstance(it_train_images[0], basestring):
it_train_images = np.asarray(
[
data_to_tfrecords.load_image(im)
for im in it_train_images])
feed_dict = {
train_dict['train_images']: it_train_images,
train_dict['train_labels']: it_train_labels
}
(
train_score,
train_loss,
it_train_dict,
timer) = training_step(
sess=sess,
train_dict=train_dict,
config=config,
feed_dict=feed_dict)
train_losses.append(train_loss)
if step % config.validation_period == 0:
val_score, val_lo, it_val_dict, duration = validation_step(
sess=sess,
val_dict=val_dict,
config=config,
log=log,
val_images=val_images,
val_labels=val_labels,
val_batch_idx=val_batch_idx,
val_batches=val_batches)
# Save progress and important data
try:
val_check = np.where(val_lo < val_perf)[0]
if not len(val_check):
it_early_stop -= 1
print 'Deducted from early stop count.'
else:
it_early_stop = config.early_stop
best_val_dict = it_val_dict
print 'Reset early stop count.'
if it_early_stop <= 0:
print 'Early stop triggered. Ending early.'
print 'Best validation loss: %s' % np.min(val_perf)
return
save_progress(
config=config,
val_check=val_check,
weight_dict=weight_dict,
it_val_dict=it_val_dict,
exp_label=exp_label,
step=step,
directories=directories,
sess=sess,
saver=saver,
val_score=val_score,
val_loss=val_lo,
train_score=train_score,
train_loss=train_loss,
timer=duration,
num_params=num_params,
log=log,
summary_op=summary_op,
summary_writer=summary_writer,
save_activities=save_activities,
save_gradients=save_gradients,
save_checkpoints=save_checkpoints)
except Exception as e:
log.info('Failed to save checkpoint: %s' % e)
# Hack to get the visulations... clean this up later
if "BSDS500_test_orientation_viz" in config.experiment: # .model == "BSDS_inh_perturb" or config.model == "BSDS_exc_perturb":
# from matplotlib import pyplot as plt;plt.plot(it_train_dict['train_logits'].squeeze(), "r", label="Perturb");plt.plot(it_train_dict['train_labels'].squeeze()[-6:], 'b', label="GT");plt.legend();plt.show()
# from matplotlib import pyplot as plt;plt.imshow((it_train_dict['impatch'].squeeze() + np.asarray([123.68, 116.78, 103.94])[None, None]).astype(np.uint8));plt.show()
# from matplotlib import pyplot as plt;dd = it_train_dict["grad0"];plt.imshow(np.abs(dd.squeeze()).mean(-1) / (np.abs(dd.squeeze()).std(-1) + 1e-4));plt.show()
# from matplotlib import pyplot as plt;dd = it_train_dict['mask'];plt.imshow(dd.squeeze().mean(-1));plt.show()
train_logits.append([it_train_dict["train_logits"].ravel()])
out_dir = "circuits_{}".format(config.out_dir)
py_utils.make_dir(out_dir)
out_target = os.path.join(out_dir, "{}_{}".format(config.model, config.train_dataset))
np.save("{}_optim".format(out_target), [sess.run(tf.trainable_variables())]) # , it_train_dict["conv"]])
np.save("{}_perf".format(out_target), train_losses)
np.save("{}_curves".format(out_target), train_logits)
np.save("{}_label".format(out_target), it_train_dict["train_labels"])
"""
if config.model == "BSDS_inh_perturb":
np.save("inh_perturbs/optim", sess.run(tf.trainable_variables()[0]))
np.save("inh_perturbs/perf", train_losses)
np.save("inh_perturbs/curves", train_logits)
np.save("inh_perturbs/label", it_train_dict["train_labels"])
if config.model == "BSDS_exc_perturb":
np.save("exc_perturbs/optim", sess.run(tf.trainable_variables()[0]))
np.save("exc_perturbs/perf", train_losses)
np.save("exc_perturbs/curves", train_logits)
np.save("exc_perturbs/label", it_train_dict["train_labels"])
"""
# Training status and validation accuracy
val_status(
log=log,
dt=datetime.now(),
step=step,
train_loss=train_loss,
rate=config.val_batch_size / duration,
timer=float(duration),
score_function=config.score_function,
train_score=train_score,
val_score=val_score,
val_loss=val_lo,
best_val_loss=np.min(val_perf),
summary_dir=directories['summaries'])
else:
# Training status
io_duration = time.time() - io_start_time
train_status(
log=log,
dt=datetime.now(),
step=step,
train_loss=train_loss,
rate=config.val_batch_size / duration,
timer=float(duration),
io_timer=float(io_duration),
lr=it_train_dict['lr'],
score_function=config.score_function,
train_score=train_score)
# End iteration
val_perf = np.concatenate([val_perf, [val_lo]])
step += 1
# Adaptive ending
if adaptive_train and train_loss <= adaptive_train:
break
if adaptive_train and train_loss <= adaptive_train:
break
else:
try:
while not coord.should_stop():
(
train_score,
train_loss,
it_train_dict,
duration) = training_step(
sess=sess,
config=config,
train_dict=train_dict)
io_start_time = time.time()
if step % config.validation_period == 0:
val_score, val_lo, it_val_dict, duration = validation_step(
sess=sess,
val_dict=val_dict,
config=config,
log=log)
# Save progress and important data
try:
val_check = np.where(val_lo < val_perf)[0]
if not len(val_check):
it_early_stop -= 1
print 'Deducted from early stop count.'
else:
it_early_stop = config.early_stop
best_val_dict = it_val_dict
print 'Reset early stop count.'
if it_early_stop <= 0:
print 'Early stop triggered. Ending early.'
print 'Best validation loss: %s' % np.min(val_perf)
break
val_perf = save_progress(
config=config,
val_check=val_check,
weight_dict=weight_dict,
it_val_dict=it_val_dict,
exp_label=exp_label,
step=step,
directories=directories,
sess=sess,
saver=saver,
val_score=val_score,
val_loss=val_lo,
val_perf=val_perf,
train_score=train_score,
train_loss=train_loss,
timer=duration,
num_params=num_params,
log=log,
use_db=use_db,
summary_op=summary_op,
summary_writer=summary_writer,
save_activities=save_activities,
save_gradients=save_gradients,
save_checkpoints=save_checkpoints)
except Exception as e:
log.info('Failed to save checkpoint: %s' % e)
# Training status and validation accuracy
val_status(
log=log,
dt=datetime.now(),
step=step,
train_loss=train_loss,
rate=config.val_batch_size / duration,
timer=float(duration),
score_function=config.score_function,
train_score=train_score,
val_score=val_score,
val_loss=val_lo,
best_val_loss=np.min(val_perf),
summary_dir=directories['summaries'])
else:
# Training status
io_duration = time.time() - io_start_time
train_status(
log=log,
dt=datetime.now(),
step=step,
train_loss=train_loss,
rate=config.val_batch_size / duration,
timer=float(duration),
io_timer=float(io_duration),
lr=it_train_dict['lr'],
score_function=config.score_function,
train_score=train_score)
# End iteration
step += 1
except tf.errors.OutOfRangeError:
log.info(
'Done training for %d epochs, %d steps.' % (
config.epochs, step))
log.info('Saved to: %s' % directories['checkpoints'])
finally:
coord.request_stop()
coord.join(threads)
sess.close()
print 'Best %s loss: %s' % (config.val_loss_function, val_perf[0])
if hasattr(config, 'get_map') and config.get_map:
tf_fun.calculate_map(best_val_dict, exp_label, config)
return
def validation_step(
sess,
val_dict,
config,
log,
sequential=False,
dict_image_key='val_images',
dict_label_key='val_labels',
eval_score_key='val_score',
eval_loss_key='val_loss',
map_im_key='val_images',
map_log_key='val_logits',
map_lab_key='val_labels',
val_images=False,
val_labels=False,
val_batch_idx=None,
val_batches=False):
it_val_score = np.asarray([])
it_val_loss = np.asarray([])
start_time = time.time()
save_val_dicts = (hasattr(config, 'get_map') and config.get_map) or \
(hasattr(config, 'all_results') and config.all_results)
# map_log_key="fgru" # Hack to get activities for viz.
if save_val_dicts:
it_val_dicts = []
for idx in range(config.validation_steps):
# Validation accuracy as the average of n batches
file_paths = '' # Init empty full path image info for tfrecords
if val_batch_idx is not None:
if not sequential and len(val_batch_idx) > 1:
it_val_batch_idx = val_batch_idx[
np.random.permutation(len(val_batch_idx))]
val_step = np.random.randint(low=0, high=val_batch_idx.max())
else:
it_val_batch_idx = val_batch_idx
val_step = idx
if val_images.shape > 1:
it_idx = it_val_batch_idx == val_step
it_ims = val_images[it_idx]
it_labs = val_labels[it_idx]
# Correct for batch-size=1 cases
if isinstance(it_ims[0], basestring):
file_paths = np.copy(it_ims)
it_ims = np.asarray(
[
data_to_tfrecords.load_image(im)
for im in it_ims])
if isinstance(it_labs[0], basestring):
it_labs = np.asarray(
[
data_to_tfrecords.load_image(im)
for im in it_labs])
feed_dict = {
val_dict[dict_image_key]: it_ims,
val_dict[dict_label_key]: it_labs
}
it_val_dict = sess.run(val_dict, feed_dict=feed_dict)
else:
it_val_dict = sess.run(val_dict)
if hasattr(config, 'plot_recurrence') and config.plot_recurrence:
tf_fun.visualize_recurrence(
idx=idx,
image=it_ims,
label=it_labs,
logits=it_val_dict['test_logits'],
h2s=it_val_dict['h2_list'],
ff=it_val_dict['ff'],
config=config,
debug=False)
# Patch for accuracy... TODO: Fix the TF op
# if config.score_function == 'accuracy':
# preds = np.argsort(it_val_dict['val_logits'], -1)[:, -1]
# it_val_score = np.mean(
# preds == it_val_dict['val_labels'].astype(float))
if config.score_function == 'fixed_accuracy':
it_val_labels = it_val_dict[map_lab_key].astype(float)
it_val_logits = np.round(sigmoid(it_val_dict[map_log_key])).astype(float)
it_val_score = np.mean(it_val_labels == it_val_logits)
it_val_score = np.append(
it_val_score,
it_val_dict[eval_score_key])
it_val_loss = np.append(
it_val_loss,
it_val_dict[eval_loss_key])
if save_val_dicts:
trim_dict = {
'images': it_val_dict[map_im_key], # im_key='val_images'],
'logits': it_val_dict[map_log_key], # log_key='val_logits'],
'labels': it_val_dict[map_lab_key], # lab_key='val_labels']
'image_paths': file_paths,
}
it_val_dicts += [trim_dict]
val_score = it_val_score.mean()
val_lo = it_val_loss.mean()
duration = time.time() - start_time
if save_val_dicts:
it_val_dict = it_val_dicts
return val_score, val_lo, it_val_dict, duration
def training_loop(config,
coord,
sess,
summary_op,
summary_writer,
saver,
threads,
directories,
train_dict,
val_dict,
exp_label,
data_structure,
placeholders=False,
save_checkpoints=False,
save_activities=True,
save_gradients=False):
"""Run the model training loop."""
log = logger.get(os.path.join(config.log_dir, exp_label))
step = 0
if config.save_weights:
try:
weight_dict = {v.name: v for v in tf.trainable_variables()}
val_dict = dict(val_dict, **weight_dict)
except Exception:
raise RuntimeError('Failed to find weights to save.')
if placeholders:
placeholder_images = placeholders[0]
placeholder_labels = placeholders[1]
train_images = placeholder_images['train']
val_images = placeholder_images['val']
train_labels = placeholder_labels['train']
val_labels = placeholder_labels['val']
train_batches = len(train_images) / config.batch_size
train_batch_idx = np.arange(train_batches / config.batch_size).reshape(
-1, 1).repeat(config.batch_size)
train_images = train_images[:len(train_batch_idx)]
train_labels = train_labels[:len(train_batch_idx)]
val_batches = len(val_images) / config.batch_size
val_batch_idx = np.arange(val_batches / config.batch_size).reshape(
-1, 1).repeat(config.batch_size)
val_images = val_images[:len(val_batch_idx)]
val_labels = val_labels[:len(val_batch_idx)]
for epoch in tqdm(range(config.epochs),
desc='Epoch',
total=config.epochs):
for train_batch in range(train_batches):
data_idx = train_batch_idx == train_batch
it_train_images = train_images[data_idx]
it_train_labels = train_labels[data_idx]
if isinstance(it_train_images[0], basestring):
it_train_images = np.asarray([
data_to_tfrecords.load_image(im)
for im in it_train_images
])
feed_dict = {
train_dict['train_images']: it_train_images,
train_dict['train_labels']: it_train_labels
}
(train_acc, train_loss, it_train_dict,
timesteps) = training_step(sess=sess,
train_dict=train_dict,
feed_dict=feed_dict)
if step % config.validation_iters == 0:
val_acc, val_lo, it_val_dict, duration = validation_step(
sess=sess,
val_dict=val_dict,
data_structure=data_structure,
config=config,
log=log,
val_images=val_images,
val_labels=val_labels,
val_batch_idx=val_batch_idx,
val_batches=val_batches)
# Save progress and important data
save_progress(config=config,
weight_dict=weight_dict,
it_val_dict=it_val_dict,
exp_label=exp_label,
step=step,
directories=directories,
sess=sess,
saver=saver,
data_structure=data_structure,
val_acc=val_acc,
val_lo=val_lo,
train_acc=train_acc,
train_loss=train_loss,
timesteps=timesteps,
log=log,
summary_op=summary_op,
summary_writer=summary_writer,
save_activities=save_activities,
save_checkpoints=save_checkpoints)
# Training status and validation accuracy
format_str = (
'%s: step %d, loss = %.2f (%.1f examples/sec; '
'%.3f sec/batch) | Training accuracy = %s | '
'Validation accuracy = %s | logdir = %s')
log.info(format_str %
(datetime.now(), step, train_acc,
config.batch_size / duration, float(duration),
train_loss, val_acc, directories['summaries']))
else:
# Training status
format_str = (
'%s: step %d, loss = %.5f (%.1f examples/sec; '
'%.3f sec/batch) | Training accuracy = %s')
log.info(
format_str %
(datetime.now(), step, train_loss, config.batch_size /
duration, float(duration), train_acc))
step += 1
else:
try:
while not coord.should_stop():
(train_acc, train_loss, it_train_dict,
duration) = training_step(sess=sess, train_dict=train_dict)
if step % config.validation_iters == 0:
val_acc, val_lo, it_val_dict, duration = validation_step(
sess=sess, val_dict=val_dict, config=config, log=log)
# Save progress and important data
save_progress(config=config,
weight_dict=weight_dict,
it_val_dict=it_val_dict,
exp_label=exp_label,
step=step,
directories=directories,
sess=sess,
saver=saver,
data_structure=data_structure,
val_acc=val_acc,
val_lo=val_lo,
train_acc=train_acc,
train_loss=train_loss,
timesteps=duration,
log=log,
summary_op=summary_op,
summary_writer=summary_writer,
save_activities=save_activities,
save_checkpoints=save_checkpoints)
# Training status and validation accuracy
format_str = (
'%s: step %d, loss = %.2f (%.1f examples/sec; '
'%.3f sec/batch) | Training accuracy = %s | '
'Validation accuracy = %s | logdir = %s')
log.info(format_str %
(datetime.now(), step, train_acc,
config.batch_size / duration, float(duration),
train_loss, val_acc, directories['summaries']))
else:
# Training status
format_str = (
'%s: step %d, loss = %.5f (%.1f examples/sec; '
'%.3f sec/batch) | Training accuracy = %s')
log.info(
format_str %
(datetime.now(), step, train_loss, config.batch_size /
duration, float(duration), train_acc))
# End iteration
step += 1
except tf.errors.OutOfRangeError:
log.info('Done training for %d epochs, %d steps.' %
(config.epochs, step))
log.info('Saved to: %s' % directories['checkpoints'])
finally:
coord.request_stop()
coord.join(threads)
sess.close()
# Package output variables into a dictionary
if save_gradients:
np.savez(
os.path.join(config.results, '%s_train_gradients' % exp_label),
**it_train_dict)
np.savez(os.path.join(config.results, '%s_val_gradients' % exp_label),
**it_val_dict)
return
