def test_copy(self):
ds1 = DataSet(data.getXml())
ds2 = ds1.copy()
self.assertFalse(ds1 == ds2)
self.assertFalse(ds1.uuid == ds2.uuid)
self.assertFalse(ds1 is ds2)
self.assertTrue(ds1.name == ds2.name)
self.assertTrue(ds1.externalResources == ds2.externalResources)
# The name and UniqueId are different:
self.assertFalse(ds1.objMetadata == ds2.objMetadata)
self.assertTrue(ds1.filters == ds2.filters)
self.assertTrue(ds1.subdatasets == ds2.subdatasets)
self.assertTrue(len(ds1.subdatasets) == 2)
self.assertTrue(len(ds2.subdatasets) == 2)
assert not reduce(lambda x, y: x or y, [
ds1d is ds2d for ds1d in ds1.subdatasets
for ds2d in ds2.subdatasets
])
# TODO: once simulated files are indexable, turn on strict:
ds1 = SubreadSet(data.getXml(no=10), strict=False)
self.assertEquals(type(ds1.metadata).__name__, 'SubreadSetMetadata')
ds2 = ds1.copy()
self.assertEquals(type(ds2.metadata).__name__, 'SubreadSetMetadata')
# Lets try casting
ds1 = DataSet(data.getBam())
self.assertEquals(type(ds1).__name__, 'DataSet')
ds1 = ds1.copy(asType='SubreadSet')
self.assertEquals(type(ds1).__name__, 'SubreadSet')
# Lets do some illicit casting
with self.assertRaises(TypeError):
ds1 = ds1.copy(asType='ReferenceSet')
# Lets try not having to cast
ds1 = SubreadSet(data.getBam())
self.assertEquals(type(ds1).__name__, 'SubreadSet')
def test_copy(self):
ds1 = DataSet(data.getXml())
ds2 = ds1.copy()
self.assertFalse(ds1 == ds2)
self.assertFalse(ds1.uuid == ds2.uuid)
self.assertFalse(ds1 is ds2)
self.assertTrue(ds1.name == ds2.name)
self.assertTrue(ds1.externalResources == ds2.externalResources)
# The name and UniqueId are different:
self.assertFalse(ds1.objMetadata == ds2.objMetadata)
self.assertTrue(ds1.filters == ds2.filters)
self.assertTrue(ds1.subdatasets == ds2.subdatasets)
self.assertTrue(len(ds1.subdatasets) == 2)
self.assertTrue(len(ds2.subdatasets) == 2)
assert not reduce(lambda x, y: x or y,
[ds1d is ds2d for ds1d in
ds1.subdatasets for ds2d in
ds2.subdatasets])
# TODO: once simulated files are indexable, turn on strict:
ds1 = SubreadSet(data.getXml(no=10), strict=False)
self.assertEquals(type(ds1.metadata).__name__,
'SubreadSetMetadata')
ds2 = ds1.copy()
self.assertEquals(type(ds2.metadata).__name__,
'SubreadSetMetadata')
# Lets try casting
ds1 = DataSet(data.getBam())
self.assertEquals(type(ds1).__name__,
'DataSet')
ds1 = ds1.copy(asType='SubreadSet')
self.assertEquals(type(ds1).__name__,
'SubreadSet')
# Lets do some illicit casting
with self.assertRaises(TypeError):
ds1 = ds1.copy(asType='ReferenceSet')
# Lets try not having to cast
ds1 = SubreadSet(data.getBam())
self.assertEquals(type(ds1).__name__, 'SubreadSet')
