class TestOTI(unittest.TestCase):
def setUp(self):
d = get_test_ot_service_domains()
self.oti = OTI(d)
def testSearchProperties(self):
st = self.oti.search_terms
self.assertIn('study_properties', st)
self.assertIn('tree_properties', st)
def testFindAllStudies(self):
x = self.oti.find_all_studies(verbose=True)
self.assertTrue(len(x) > 0)
self.assertTrue('ot:studyId' in x[0])
def testStudyTerms(self):
t_set = self.oti.study_search_term_set
self.assertTrue(bool(t_set))
r = self.oti.find_studies(
{'ot:studyPublication': '10.1073/pnas.0709121104'})
self.assertTrue(len(r) > 0)
def testNodeTerms(self):
if self.oti.use_v1:
t_set = self.oti.node_search_term_set
self.assertTrue('ot:ottId' in t_set)
nl = self.oti.find_nodes(ottId=990437)
self.assertTrue(len(nl) > 0)
f = nl[0]
self.assertTrue('matched_trees' in f)
t = f['matched_trees']
self.assertTrue(len(t) > 0)
tr = t[0]
self.assertTrue('matched_nodes' in tr)
n = tr['matched_nodes']
self.assertTrue(len(n) > 0)
def testBadNodeTerms(self):
if self.oti.use_v1:
qd = {'bogus key': 'Aponogeoton ulvaceus 1 2'}
self.assertRaises(ValueError, self.oti.find_nodes, qd)
def testTreeTerms(self):
qd = {'ot:ottTaxonName': 'Aponogeton ulvaceus'}
if self.oti.use_v1:
nl = self.oti.find_trees(qd)
self.assertTrue(len(nl) > 0)
f = nl[0]
self.assertTrue('matched_trees' in f)
t = f['matched_trees']
self.assertTrue(len(t) > 0)
def testBadTreeTerms(self):
qd = {'bogus key': 'Aponogeoton ulvaceus 1 2'}
self.assertRaises(ValueError, self.oti.find_trees, qd)
class TestOTI(unittest.TestCase):
def setUp(self):
d = get_test_ot_service_domains()
self.oti = OTI(d)
def testSearchProperties(self):
st = self.oti.search_terms
self.assertIn('study_properties', st)
self.assertIn('tree_properties', st)
def testFindAllStudies(self):
x = self.oti.find_all_studies(verbose=True)
self.assertTrue(len(x) > 0)
self.assertTrue('ot:studyId' in x[0])
def testStudyTerms(self):
t_set = self.oti.study_search_term_set
self.assertTrue(bool(t_set))
r = self.oti.find_studies({'ot:studyPublication': '10.1073/pnas.0709121104'})
self.assertTrue(len(r) > 0)
def testNodeTerms(self):
if self.oti.use_v1:
t_set = self.oti.node_search_term_set
self.assertTrue('ot:ottId' in t_set)
nl = self.oti.find_nodes(ottId=990437)
self.assertTrue(len(nl) > 0)
f = nl[0]
self.assertTrue('matched_trees' in f)
t = f['matched_trees']
self.assertTrue(len(t) > 0)
tr = t[0]
self.assertTrue('matched_nodes' in tr)
n = tr['matched_nodes']
self.assertTrue(len(n) > 0)
def testBadNodeTerms(self):
if self.oti.use_v1:
qd = {'bogus key': 'Aponogeoton ulvaceus 1 2'}
self.assertRaises(ValueError, self.oti.find_nodes, qd)
def testTreeTerms(self):
qd = {'ot:ottTaxonName': 'Aponogeton ulvaceus'}
if self.oti.use_v1:
nl = self.oti.find_trees(qd)
self.assertTrue(len(nl) > 0)
f = nl[0]
self.assertTrue('matched_trees' in f)
t = f['matched_trees']
self.assertTrue(len(t) > 0)
def testBadTreeTerms(self):
qd = {'bogus key': 'Aponogeoton ulvaceus 1 2'}
self.assertRaises(ValueError, self.oti.find_trees, qd)