示例#1
0
class TestOTI(unittest.TestCase):
    def setUp(self):
        d = get_test_ot_service_domains()
        self.oti = OTI(d)

    def testSearchProperties(self):
        st = self.oti.search_terms
        self.assertIn('study_properties', st)
        self.assertIn('tree_properties', st)

    def testFindAllStudies(self):
        x = self.oti.find_all_studies(verbose=True)
        self.assertTrue(len(x) > 0)
        self.assertTrue('ot:studyId' in x[0])

    def testStudyTerms(self):
        t_set = self.oti.study_search_term_set
        self.assertTrue(bool(t_set))
        r = self.oti.find_studies(
            {'ot:studyPublication': '10.1073/pnas.0709121104'})
        self.assertTrue(len(r) > 0)

    def testNodeTerms(self):
        if self.oti.use_v1:
            t_set = self.oti.node_search_term_set
            self.assertTrue('ot:ottId' in t_set)
            nl = self.oti.find_nodes(ottId=990437)
            self.assertTrue(len(nl) > 0)
            f = nl[0]
            self.assertTrue('matched_trees' in f)
            t = f['matched_trees']
            self.assertTrue(len(t) > 0)
            tr = t[0]
            self.assertTrue('matched_nodes' in tr)
            n = tr['matched_nodes']
            self.assertTrue(len(n) > 0)

    def testBadNodeTerms(self):
        if self.oti.use_v1:
            qd = {'bogus key': 'Aponogeoton ulvaceus 1 2'}
            self.assertRaises(ValueError, self.oti.find_nodes, qd)

    def testTreeTerms(self):
        qd = {'ot:ottTaxonName': 'Aponogeton ulvaceus'}
        if self.oti.use_v1:
            nl = self.oti.find_trees(qd)
            self.assertTrue(len(nl) > 0)
            f = nl[0]
            self.assertTrue('matched_trees' in f)
            t = f['matched_trees']
            self.assertTrue(len(t) > 0)

    def testBadTreeTerms(self):
        qd = {'bogus key': 'Aponogeoton ulvaceus 1 2'}
        self.assertRaises(ValueError, self.oti.find_trees, qd)
示例#2
0
class TestOTI(unittest.TestCase):
    def setUp(self):
        d = get_test_ot_service_domains()
        self.oti = OTI(d)

    def testSearchProperties(self):
        st = self.oti.search_terms
        self.assertIn('study_properties', st)
        self.assertIn('tree_properties', st)

    def testFindAllStudies(self):
        x = self.oti.find_all_studies(verbose=True)
        self.assertTrue(len(x) > 0)
        self.assertTrue('ot:studyId' in x[0])

    def testStudyTerms(self):
        t_set = self.oti.study_search_term_set
        self.assertTrue(bool(t_set))
        r = self.oti.find_studies({'ot:studyPublication': '10.1073/pnas.0709121104'})
        self.assertTrue(len(r) > 0)

    def testNodeTerms(self):
        if self.oti.use_v1:
            t_set = self.oti.node_search_term_set
            self.assertTrue('ot:ottId' in t_set)
            nl = self.oti.find_nodes(ottId=990437)
            self.assertTrue(len(nl) > 0)
            f = nl[0]
            self.assertTrue('matched_trees' in f)
            t = f['matched_trees']
            self.assertTrue(len(t) > 0)
            tr = t[0]
            self.assertTrue('matched_nodes' in tr)
            n = tr['matched_nodes']
            self.assertTrue(len(n) > 0)

    def testBadNodeTerms(self):
        if self.oti.use_v1:
            qd = {'bogus key': 'Aponogeoton ulvaceus 1 2'}
            self.assertRaises(ValueError, self.oti.find_nodes, qd)

    def testTreeTerms(self):
        qd = {'ot:ottTaxonName': 'Aponogeton ulvaceus'}
        if self.oti.use_v1:
            nl = self.oti.find_trees(qd)
            self.assertTrue(len(nl) > 0)
            f = nl[0]
            self.assertTrue('matched_trees' in f)
            t = f['matched_trees']
            self.assertTrue(len(t) > 0)

    def testBadTreeTerms(self):
        qd = {'bogus key': 'Aponogeoton ulvaceus 1 2'}
        self.assertRaises(ValueError, self.oti.find_trees, qd)