示例#1
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def test_iterator_generic_uncompressed():
    f = open("windows_small.bed")
    l = len( list( pysam.tabix_generic_iterator( f, parser = pysam.asBed() )))
示例#2
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def test_iterator_generic_compressed():
    f = gzip.open(fn_compressed)
    l = len( list( pysam.tabix_generic_iterator( f, parser = pysam.asBed() )))
示例#3
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def iterate_generic_uncompressed(fn):
    with open(fn) as f:
        return len(list(pysam.tabix_generic_iterator(f, parser=pysam.asBed())))
示例#4
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文件： tabix_bench.py 项目： msto/pysam 
def iterate_generic_uncompressed(fn):
    with open(fn) as f:
        return len(list(pysam.tabix_generic_iterator(f, parser=pysam.asBed())))
示例#5
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def test_iterator_generic_uncompressed():
    f = open("windows_small.bed")
    l = len(list(pysam.tabix_generic_iterator(f, parser=pysam.asBed())))
示例#6
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def test_iterator_generic_compressed():
    f = gzip.open(fn_compressed)
    l = len(list(pysam.tabix_generic_iterator(f, parser=pysam.asBed())))