def train(args, model, train_dataset): ## total_train_steps = len( train_dataset) / args.batch_size * args.num_train_epochs # prepare optimizer param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [ { 'params': [ p for n, p in param_optimizer if not any(nd in n for nd in no_decay) ], 'weight_decay': args.decay_rate }, # no no_decay params in p { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 } # any one of no_decay in p ] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learn_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule(warmup=args.warmup_proportion, t_total=total_train_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learn_rate, warmup=args.warmup_proportion, t_total=total_train_steps)
def prepare_optimizer(self): param_optimizer = list(self.model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [ p for n, p in param_optimizer if not any(nd in n for nd in no_decay) ], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if self.args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) self.optimizer = FusedAdam(optimizer_grouped_parameters, lr=self.args.learning_rate, bias_correction=False, max_grad_norm=1.0) self.warmup_schedule = WarmupLinearSchedule( warmup=self.args.warmup_proportion, t_total=self.num_train_optimization_steps) if self.args.loss_scale == 0: self.optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: self.optimizer = FP16_Optimizer( optimizer, static_loss_scale=self.args.loss_scale) else: self.optimizer = BertAdam( optimizer_grouped_parameters, lr=self.args.learning_rate, warmup=self.args.warmup_proportion, t_total=self.num_train_optimization_steps, weight_decay=0.01)
except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule( warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 nb_tr_steps = 0 tr_loss = 0 if args.do_train: train_features = convert_examples_to_features(train_examples, processor.l2i, args.max_seq_length,
def main(): parser = argparse.ArgumentParser() ## Required parameters parser.add_argument("--data_dir", default='./dataset/raw', type=str, # required=True, help="The input data dir. Should contain the .tsv files (or other data files) for the task.") parser.add_argument("--bert_model", default='bert-base-uncased', type=str, # required=True, help="Bert pre-trained model selected in the list: bert-base-uncased, " "bert-large-uncased, bert-base-cased, bert-large-cased, bert-base-multilingual-uncased, " "bert-base-multilingual-cased, bert-base-chinese.") parser.add_argument("--task_name", default='mnli', type=str, # required=True, help="The name of the task to train.") parser.add_argument("--output_dir", default='./bert_outputs', type=str, # required=True, help="The output directory where the model predictions and checkpoints will be written.") parser.add_argument("--vocab_dir", default='../BERT_pytorch_model', type=str, # required=True, help="The input data dir. Should contain the .tsv files (or other data files) for the task.") parser.add_argument("--model_dir", default='../BERT_pytorch_model', type=str, # required=True, help="The input data dir. Should contain the .tsv files (or other data files) for the task.") ## Other parameters parser.add_argument("--cache_dir", default="", type=str, help="Where do you want to store the pre-trained models downloaded from s3") parser.add_argument("--max_seq_length", default=128, type=int, help="The maximum total input sequence length after WordPiece tokenization. \n" "Sequences longer than this will be truncated, and sequences shorter \n" "than this will be padded.") parser.add_argument('--do_train', # default=False, # type=bool, action='store_true', help="Whether to run training.") parser.add_argument('--do_eval', # default=True, # type=bool, action='store_true', help="Whether to run eval on the dev set.") parser.add_argument("--do_lower_case", default=True, type=bool, # action='store_true', help="Set this flag if you are using an uncased model.") parser.add_argument("--train_batch_size", default=32, type=int, help="Total batch size for training.") parser.add_argument("--eval_batch_size", default=32, type=int, help="Total batch size for eval.") parser.add_argument("--learning_rate", default=3e-5, type=float, help="The initial learning rate for Adam.") parser.add_argument("--num_train_epochs", default=10.0, type=float, help="Total number of training epochs to perform.") parser.add_argument("--warmup_proportion", default=0.5, type=float, help="Proportion of training to perform linear learning rate warmup for. " "E.g., 0.1 = 10%% of training.") parser.add_argument("--no_cuda", action='store_true', help="Whether not to use CUDA when available") parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus") parser.add_argument('--seed', type=int, default=42, help="random seed for initialization") parser.add_argument('--gradient_accumulation_steps', type=int, default=1, help="Number of updates steps to accumulate before performing a backward/update pass.") parser.add_argument('--fp16', action='store_true', help="Whether to use 16-bit float precision instead of 32-bit") parser.add_argument('--loss_scale', type=float, default=0, help="Loss scaling to improve fp16 numeric stability. Only used when fp16 set to True.\n" "0 (default value): dynamic loss scaling.\n" "Positive power of 2: static loss scaling value.\n") parser.add_argument('--server_ip', type=str, default='', help="Can be used for distant debugging.") parser.add_argument('--server_port', type=str, default='', help="Can be used for distant debugging.") args = parser.parse_args() if args.server_ip and args.server_port: # Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script import ptvsd print("Waiting for debugger attach") ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True) ptvsd.wait_for_attach() processors = { "mnli": MnliProcessor, "mrpc": MrpcProcessor, } num_labels_task = { "mnli": 2, "mrpc": 2, } if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logger.info("device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}".format( device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError("Invalid gradient_accumulation_steps parameter: {}, should be >= 1".format( args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_eval: raise ValueError("At least one of `do_train` or `do_eval` must be True.") if os.path.exists(args.output_dir) and os.listdir(args.output_dir) and args.do_train: raise ValueError("Output directory ({}) already exists and is not empty.".format(args.output_dir)) if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) task_name = args.task_name.lower() if task_name not in processors: raise ValueError("Task not found: %s" % (task_name)) processor = processors[task_name]() num_labels = num_labels_task[task_name] label_list = processor.get_labels() vocab_dir = os.path.join(args.vocab_dir, args.bert_model) tokenizer = BertTokenizer.from_pretrained(vocab_dir, do_lower_case=args.do_lower_case) train_examples = None num_train_optimization_steps = None if args.do_train: train_examples = processor.get_train_examples(args.data_dir) num_train_optimization_steps = int( len(train_examples) / args.train_batch_size / args.gradient_accumulation_steps) * args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size() # Prepare model cache_dir = args.cache_dir if args.cache_dir else os.path.join(str(PYTORCH_PRETRAINED_BERT_CACHE), 'distributed_{}'.format(args.local_rank)) model_dir = os.path.join(args.model_dir, args.bert_model) model = BertForSequenceClassification.from_pretrained(model_dir, cache_dir=cache_dir, num_labels=num_labels) if args.fp16: model.half() model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training.") model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) # Prepare optimizer param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [ {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01}, {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0} ] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training.") optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, weight_decay=0.05, max_grad_norm=5.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule(warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps, weight_decay=0.05, max_grad_norm=5.0) global_step = 0 nb_tr_steps = 0 tr_loss = 0 output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME) output_config_file = os.path.join(args.output_dir, CONFIG_NAME) if args.do_train: train_features = convert_examples_to_features( train_examples, label_list, args.max_seq_length, tokenizer) logger.info("***** Training *****") logger.info(" Num examples = %d", len(train_examples)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) all_input_ids = torch.tensor([f.input_ids for f in train_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in train_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in train_features], dtype=torch.long) all_label_ids = torch.tensor([f.label_id for f in train_features], dtype=torch.long) train_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, num_workers=int(cpu_count() / 2), sampler=train_sampler, batch_size=args.train_batch_size) eval_examples = processor.get_dev_examples(args.data_dir) eval_features = convert_examples_to_features( eval_examples, label_list, args.max_seq_length, tokenizer) logger.info("***** Validation *****") logger.info(" Num examples = %d", len(eval_examples)) logger.info(" Batch size = %d", args.eval_batch_size) all_input_ids = torch.tensor([f.input_ids for f in eval_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in eval_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in eval_features], dtype=torch.long) all_label_ids = torch.tensor([f.label_id for f in eval_features], dtype=torch.long) eval_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) # Run prediction for full data eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size, num_workers=int(cpu_count() / 2)) max_sum, max_epoch = 0, 0 for i in trange(int(args.num_train_epochs), desc="Epoch"): logger.info('\nEpoch - {}'.format(i + 1)) model.train() train_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 # for step, batch in enumerate(tqdm(train_dataloader, desc="Iteration")): for step, batch in enumerate(train_dataloader): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, label_ids = batch loss = model(input_ids, segment_ids, input_mask, label_ids) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() train_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically # lr_this_step = args.learning_rate * warmup_linear(global_step / num_train_optimization_steps, # args.warmup_proportion) lr_this_step = args.learning_rate * warmup_linear.get_lr(global_step, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 if args.do_eval and (args.local_rank == -1 or torch.distributed.get_rank() == 0): model.eval() eval_loss, eval_accuracy = 0, 0 nb_eval_steps, nb_eval_examples = 0, 0 preds, scores, labels = [], [], [] for step, batch in enumerate(eval_dataloader): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, label_ids = batch input_ids = input_ids.to(device) input_mask = input_mask.to(device) segment_ids = segment_ids.to(device) label_ids = label_ids.to(device) with torch.no_grad(): tmp_eval_loss = model(input_ids, segment_ids, input_mask, label_ids) logits = model(input_ids, segment_ids, input_mask) logits = logits.detach().cpu().numpy() label_ids = label_ids.to('cpu').numpy() preds += np.argmax(logits, axis=1).tolist() scores += logits[:, 1].tolist() labels += label_ids.tolist() # tmp_eval_accuracy = accuracy(logits, label_ids) eval_loss += tmp_eval_loss.mean().item() # eval_accuracy += tmp_eval_accuracy nb_eval_examples += input_ids.size(0) nb_eval_steps += 1 acc, precision, recall, f1, auroc, auprc = metrics(preds, scores, labels) tmp_sum = acc if tmp_sum > max_sum: max_sum = tmp_sum max_epoch = i + 1 model_to_save = model.module if hasattr(model, 'module') else model # Only save the model it-self # output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME) torch.save(model_to_save.state_dict(), output_model_file) # output_config_file = os.path.join(args.output_dir, CONFIG_NAME) with open(output_config_file, 'w') as f: f.write(model_to_save.config.to_json_string()) eval_loss = eval_loss / nb_eval_steps # eval_accuracy = eval_accuracy / nb_eval_examples train_loss = train_loss / nb_tr_steps if args.do_train else None result = {'Valid loss': eval_loss, 'Valid accuracy': acc, 'Valid precision': precision, 'Valid recall': recall, 'Valid f1': f1, 'Valid auroc': auroc, 'Valid auprc': auprc, 'Global_step': global_step, 'Loss': train_loss} output_eval_file = os.path.join(args.output_dir, "valid_results.txt") with open(output_eval_file, "w") as writer: logger.info("***** Valid results *****") for key in sorted(result.keys()): logger.info(" %s = %s", key, str(result[key])) logger.info('Confusion matrix') logger.info(confusion_matrix(labels, preds)) writer.close() logger.info('Max Epoch - {}'.format(max_epoch)) logger.info('Max Sum - {}'.format(max_sum)) # Save a trained model and the associated configuration # Load a trained model and config that you have fine-tuned # config = BertConfig(output_config_file) # model = BertForSequenceClassification(config, num_labels=num_labels) # model.load_state_dict(torch.load(output_model_file)) else: # model = BertForSequenceClassification.from_pretrained(model_dir, # cache_dir=cache_dir, # num_labels=num_labels) # model = BertForSequenceClassification.from_pretrained(args.bert_model, num_labels=num_labels) config = BertConfig(output_config_file) model = BertForSequenceClassification(config, num_labels=num_labels) model.load_state_dict(torch.load(output_model_file)) model.to(device) if args.do_eval and (args.local_rank == -1 or torch.distributed.get_rank() == 0): eval_examples = processor.get_dev_examples(args.data_dir) # eval_examples = processor.get_transfer_examples(args.data_dir) eval_features = convert_examples_to_features( eval_examples, label_list, args.max_seq_length, tokenizer) logger.info("***** Transfer *****") logger.info(" Num examples = %d", len(eval_examples)) logger.info(" Batch size = %d", args.eval_batch_size) all_input_ids = torch.tensor([f.input_ids for f in eval_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in eval_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in eval_features], dtype=torch.long) all_label_ids = torch.tensor([f.label_id for f in eval_features], dtype=torch.long) eval_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) # Run prediction for full data eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size) model.eval() eval_loss, eval_accuracy = 0, 0 nb_eval_steps, nb_eval_examples = 0, 0 preds, scores, labels = [], [], [] fp, fn = [], [] for step, batch in enumerate(eval_dataloader): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, label_ids = batch input_ids = input_ids.to(device) input_mask = input_mask.to(device) segment_ids = segment_ids.to(device) label_ids = label_ids.to(device) with torch.no_grad(): tmp_eval_loss = model(input_ids, segment_ids, input_mask, label_ids) logits = model(input_ids, segment_ids, input_mask) logits = logits.detach().cpu().numpy() label_ids = label_ids.to('cpu').numpy() p = np.argmax(logits, axis=1).tolist() preds += p s = logits[:, 1].tolist() scores += s l = label_ids.tolist() labels += l for idx, pair in enumerate(zip(p, l)): eid = step * args.eval_batch_size + idx + 1 if pair[1] == 1 and pair[0] == 0: fn.append(eid) if pair[1] == 0 and pair[0] == 1: fp.append(eid) # tmp_eval_accuracy = accuracy(logits, label_ids) eval_loss += tmp_eval_loss.mean().item() # eval_accuracy += tmp_eval_accuracy nb_eval_examples += input_ids.size(0) nb_eval_steps += 1 FALSE = {'FP': fp, 'FN': fn} with open('./FALSE.json', 'w') as f: f.write(json.dumps(FALSE) + '\n') f.close() acc, precision, recall, f1, auroc, auprc = metrics(preds, scores, labels) eval_loss = eval_loss / nb_eval_steps # eval_accuracy = eval_accuracy / nb_eval_examples loss = tr_loss / nb_tr_steps if args.do_train else None result = {'Eval loss': eval_loss, 'Eval accuracy': acc, 'Eval precision': precision, 'Eval recall': recall, 'Eval f1': f1, 'Eval auroc': auroc, 'Eval auprc': auprc, 'Global_step': global_step, 'Loss': loss} output_eval_file = os.path.join(args.output_dir, "eval_results.txt") with open(output_eval_file, "w") as writer: logger.info("***** Eval results *****") for key in sorted(result.keys()): logger.info(" %s = %s", key, str(result[key])) writer.write("%s = %s\n" % (key, str(result[key])))
def main(): parser = argparse.ArgumentParser() ## Required parameters parser.add_argument( "--data_dir", default=None, type=str, required=True, help= "The input data dir. Should contain the .csv files (or other data files) for the task." ) parser.add_argument( "--bert_model", default=None, type=str, required=True, help="Bert pre-trained model selected in the list: bert-base-uncased, " "bert-large-uncased, bert-base-cased, bert-large-cased, bert-base-multilingual-uncased, " "bert-base-multilingual-cased, bert-base-chinese.") parser.add_argument( "--output_dir", default=None, type=str, required=True, help="The output directory where the model checkpoints will be written." ) ## Other parameters parser.add_argument( "--max_seq_length", default=128, type=int, help= "The maximum total input sequence length after WordPiece tokenization. \n" "Sequences longer than this will be truncated, and sequences shorter \n" "than this will be padded.") parser.add_argument("--do_train", action='store_true', help="Whether to run training.") parser.add_argument("--do_eval", action='store_true', help="Whether to run eval on the dev set.") parser.add_argument( "--do_lower_case", action='store_true', help="Set this flag if you are using an uncased model.") parser.add_argument("--train_batch_size", default=32, type=int, help="Total batch size for training.") parser.add_argument("--eval_batch_size", default=8, type=int, help="Total batch size for eval.") parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.") parser.add_argument("--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform.") parser.add_argument( "--warmup_proportion", default=0.1, type=float, help= "Proportion of training to perform linear learning rate warmup for. " "E.g., 0.1 = 10%% of training.") parser.add_argument("--no_cuda", action='store_true', help="Whether not to use CUDA when available") parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus") parser.add_argument('--seed', type=int, default=42, help="random seed for initialization") parser.add_argument( '--gradient_accumulation_steps', type=int, default=1, help= "Number of updates steps to accumulate before performing a backward/update pass." ) parser.add_argument( '--fp16', action='store_true', help="Whether to use 16-bit float precision instead of 32-bit") parser.add_argument( '--loss_scale', type=float, default=0, help= "Loss scaling to improve fp16 numeric stability. Only used when fp16 set to True.\n" "0 (default value): dynamic loss scaling.\n" "Positive power of 2: static loss scaling value.\n") args = parser.parse_args() if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logger.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_eval: raise ValueError( "At least one of `do_train` or `do_eval` must be True.") if os.path.exists(args.output_dir) and os.listdir(args.output_dir): raise ValueError( "Output directory ({}) already exists and is not empty.".format( args.output_dir)) if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case) # Prepare model model = BertForMultipleChoice.from_pretrained( args.bert_model, cache_dir=os.path.join(str(PYTORCH_PRETRAINED_BERT_CACHE), 'distributed_{}'.format(args.local_rank)), num_choices=4) if args.fp16: model.half() model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) if args.do_train: # Prepare data loader train_examples = read_swag_examples(os.path.join( args.data_dir, 'train.csv'), is_training=True) train_features = convert_examples_to_features(train_examples, tokenizer, args.max_seq_length, True) all_input_ids = torch.tensor(select_field(train_features, 'input_ids'), dtype=torch.long) all_input_mask = torch.tensor(select_field(train_features, 'input_mask'), dtype=torch.long) all_segment_ids = torch.tensor(select_field(train_features, 'segment_ids'), dtype=torch.long) all_label = torch.tensor([f.label for f in train_features], dtype=torch.long) train_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) num_train_optimization_steps = len( train_dataloader ) // args.gradient_accumulation_steps * args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) # Prepare optimizer param_optimizer = list(model.named_parameters()) # hack to remove pooler, which is not used # thus it produce None grad that break apex param_optimizer = [n for n in param_optimizer] no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [ p for n, p in param_optimizer if not any(nd in n for nd in no_decay) ], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule( warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 logger.info("***** Running training *****") logger.info(" Num examples = %d", len(train_examples)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) model.train() for _ in trange(int(args.num_train_epochs), desc="Epoch"): tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 for step, batch in enumerate( tqdm(train_dataloader, desc="Iteration")): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, label_ids = batch loss = model(input_ids, segment_ids, input_mask, label_ids) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.fp16 and args.loss_scale != 1.0: # rescale loss for fp16 training # see https://docs.nvidia.com/deeplearning/sdk/mixed-precision-training/index.html loss = loss * args.loss_scale if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 if args.fp16: optimizer.backward(loss) else: loss.backward() if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * warmup_linear.get_lr( global_step, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 if args.do_train: # Save a trained model, configuration and tokenizer model_to_save = model.module if hasattr( model, 'module') else model # Only save the model it-self # If we save using the predefined names, we can load using `from_pretrained` output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME) output_config_file = os.path.join(args.output_dir, CONFIG_NAME) torch.save(model_to_save.state_dict(), output_model_file) model_to_save.config.to_json_file(output_config_file) tokenizer.save_vocabulary(args.output_dir) # Load a trained model and vocabulary that you have fine-tuned model = BertForMultipleChoice.from_pretrained(args.output_dir, num_choices=4) tokenizer = BertTokenizer.from_pretrained( args.output_dir, do_lower_case=args.do_lower_case) else: model = BertForMultipleChoice.from_pretrained(args.bert_model, num_choices=4) model.to(device) if args.do_eval and (args.local_rank == -1 or torch.distributed.get_rank() == 0): eval_examples = read_swag_examples(os.path.join( args.data_dir, 'val.csv'), is_training=True) eval_features = convert_examples_to_features(eval_examples, tokenizer, args.max_seq_length, True) logger.info("***** Running evaluation *****") logger.info(" Num examples = %d", len(eval_examples)) logger.info(" Batch size = %d", args.eval_batch_size) all_input_ids = torch.tensor(select_field(eval_features, 'input_ids'), dtype=torch.long) all_input_mask = torch.tensor(select_field(eval_features, 'input_mask'), dtype=torch.long) all_segment_ids = torch.tensor(select_field(eval_features, 'segment_ids'), dtype=torch.long) all_label = torch.tensor([f.label for f in eval_features], dtype=torch.long) eval_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label) # Run prediction for full data eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size) model.eval() eval_loss, eval_accuracy = 0, 0 nb_eval_steps, nb_eval_examples = 0, 0 for input_ids, input_mask, segment_ids, label_ids in tqdm( eval_dataloader, desc="Evaluating"): input_ids = input_ids.to(device) input_mask = input_mask.to(device) segment_ids = segment_ids.to(device) label_ids = label_ids.to(device) with torch.no_grad(): tmp_eval_loss = model(input_ids, segment_ids, input_mask, label_ids) logits = model(input_ids, segment_ids, input_mask) logits = logits.detach().cpu().numpy() label_ids = label_ids.to('cpu').numpy() tmp_eval_accuracy = accuracy(logits, label_ids) eval_loss += tmp_eval_loss.mean().item() eval_accuracy += tmp_eval_accuracy nb_eval_examples += input_ids.size(0) nb_eval_steps += 1 eval_loss = eval_loss / nb_eval_steps eval_accuracy = eval_accuracy / nb_eval_examples result = { 'eval_loss': eval_loss, 'eval_accuracy': eval_accuracy, 'global_step': global_step, 'loss': tr_loss / global_step } output_eval_file = os.path.join(args.output_dir, "eval_results.txt") with open(output_eval_file, "w") as writer: logger.info("***** Eval results *****") for key in sorted(result.keys()): logger.info(" %s = %s", key, str(result[key])) writer.write("%s = %s\n" % (key, str(result[key])))
def train(args): if args.use_bert and args.use_xlnet: raise ValueError('We cannot use both BERT and XLNet') now_time = datetime.datetime.now().strftime('%Y-%m-%d-%H-%M-%S') log_file_name = './logs/log-' + now_time logging.basicConfig( format='%(asctime)s - %(levelname)s - %(name)s - %(message)s', datefmt='%m/%d/%Y %H:%M:%S', filename=log_file_name, filemode='w', level=logging.INFO) logger = logging.getLogger(__name__) console_handler = logging.StreamHandler() logger.addHandler(console_handler) logger = logging.getLogger(__name__) logger.info(vars(args)) if args.server_ip and args.server_port: # Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script import ptvsd print("Waiting for debugger attach") ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True) ptvsd.wait_for_attach() if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logger.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if not os.path.exists('./models'): os.mkdir('./models') if args.model_name is None: raise Warning( 'model name is not specified, the model will NOT be saved!') output_model_dir = os.path.join('./models', args.model_name + '_' + now_time) ngram2id, ngram2count = get_vocab(args.train_data_path, args.max_ngram_length, args.ngram_freq_threshold) label_map = get_labels(args.tag_path) logger.info('# of supertags: %d' % (len(label_map) - 4)) hpara = NeSTCCG.init_hyper_parameters(args) supertagger = NeSTCCG(labelmap=label_map, hpara=hpara, model_path=args.bert_model, gram2id=ngram2id) train_examples = supertagger.load_data(args.train_data_path, flag='train') dev_examples = supertagger.load_data(args.dev_data_path, flag='dev') test_examples = supertagger.load_data(args.test_data_path, flag='test') all_eval_examples = {'dev': dev_examples, 'test': test_examples} num_labels = supertagger.num_labels convert_examples_to_features = supertagger.convert_examples_to_features clipping_top_n = supertagger.clipping_top_n clipping_threshold = supertagger.clipping_threshold id2label = supertagger.id2label feature2input = supertagger.feature2input total_params = sum(p.numel() for p in supertagger.parameters() if p.requires_grad) logger.info('# of trainable parameters: %d' % total_params) num_train_optimization_steps = int( len(train_examples) / args.train_batch_size / args.gradient_accumulation_steps) * args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) if args.fp16: supertagger.half() supertagger.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) supertagger = DDP(supertagger) elif n_gpu > 1: supertagger = torch.nn.DataParallel(supertagger) param_optimizer = list(supertagger.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule( warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: # num_train_optimization_steps=-1 optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 best_eval = -1 best_info_str = '' history = { 'epoch': [], 'dev_acc': [], 'dev_cats': [], 'dev_lf': [], 'dev_uf': [], 'test_acc': [], 'test_cats': [], 'test_lf': [], 'test_uf': [] } num_of_no_improvement = 0 patient = args.patient evaluator = Evaluation(args.eval_data_dir) if args.do_train: logger.info("***** Running training *****") logger.info(" Num examples = %d", len(train_examples)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) for epoch in trange(int(args.num_train_epochs), desc="Epoch"): np.random.shuffle(train_examples) supertagger.train() tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 for step, start_index in enumerate( tqdm(range(0, len(train_examples), args.train_batch_size))): supertagger.train() batch_examples = train_examples[start_index:min( start_index + args.train_batch_size, len(train_examples))] train_features = convert_examples_to_features(batch_examples) input_ids, input_mask, l_mask, label_ids, segment_ids, valid_ids, \ dep_adjacency_matrix = feature2input(device, train_features) loss = supertagger(input_ids, segment_ids, input_mask, label_ids, valid_ids, l_mask, adjacency_matrix=dep_adjacency_matrix) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * warmup_linear( global_step / num_train_optimization_steps, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 supertagger.to(device) if args.local_rank == -1 or torch.distributed.get_rank() == 0: supertagger.eval() output_model_dir = path.join('./models', args.model_name + '_' + now_time) if not os.path.exists(output_model_dir): os.mkdir(output_model_dir) history['epoch'].append(epoch) for flag in ['dev', 'test']: eval_examples = all_eval_examples[flag] all_y_true = [] all_y_pred = [] output_suppertag_list = [] for start_index in tqdm( range(0, len(eval_examples), args.eval_batch_size)): eval_batch_examples = eval_examples[start_index:min( start_index + args.eval_batch_size, len(eval_examples))] eval_features = convert_examples_to_features( eval_batch_examples) input_ids, input_mask, l_mask, label_ids, segment_ids, valid_ids, \ dep_adjacency_matrix = feature2input(device, eval_features) with torch.no_grad(): logits = supertagger( input_ids, segment_ids, input_mask, None, valid_ids, l_mask, adjacency_matrix=dep_adjacency_matrix) logits = F.softmax(logits, dim=2) argmax_logits = torch.argmax(logits, dim=2) argsort_loagits = torch.argsort(logits, dim=2, descending=True) argmax_logits = argmax_logits.detach().cpu().numpy() argsort_loagits = argsort_loagits.detach().cpu().numpy( )[:, :, :clipping_top_n] logits = logits.to('cpu').numpy() label_ids = label_ids.to('cpu').numpy() l_mask = l_mask.to('cpu').numpy() for i, ex in enumerate(eval_batch_examples): true_label_list = ex.label temp = [] j_index = 1 for _ in range(len(true_label_list)): temp.append( id2label[argmax_logits[i][j_index]]) assert l_mask[i][j_index] == 1 j_index += 1 assert l_mask[i][j_index] == 1 assert j_index + 1 == len( l_mask[i]) or l_mask[i][j_index + 1] == 0 all_y_true.append(true_label_list) all_y_pred.append(temp) for i in range(len(label_ids)): ex = eval_batch_examples[i] label = label_ids[i] text = ex.text_a.split(' ') output_line = [] for j in range(len(label)): if j == 0: continue elif label_ids[i][j] == num_labels - 1: assert len(text) == j - 1 output_suppertag_list.append( '#word#'.join(output_line)) break else: super_tag_str_list = [] prob_str_list = [] for tag_id in argsort_loagits[i][j]: if tag_id == 0: continue tag = id2label[tag_id] prob = logits[i][j][tag_id] if len( super_tag_str_list ) > 0 and prob < clipping_threshold: break else: super_tag_str_list.append(tag) prob_str_list.append(str(prob)) word_str = text[j - 1] + '\t' + '#'.join( super_tag_str_list) + '\t' + '#'.join( prob_str_list) output_line.append(word_str) y_true_all = [] y_pred_all = [] eval_sentence_all = [] for y_true_item in all_y_true: y_true_all += y_true_item for y_pred_item in all_y_pred: y_pred_all += y_pred_item for example, y_true_item in zip(eval_examples, all_y_true): sen = example.text_a sen = sen.strip() sen = sen.split(' ') if len(y_true_item) != len(sen): # print(len(sen)) sen = sen[:len(y_true_item)] eval_sentence_all.append(sen) acc = evaluator.supertag_acc(y_pred_all, y_true_all) history[flag + '_acc'].append(acc) auto_output_file = os.path.join(output_model_dir, flag + '.auto') supertag_output_file = os.path.join( output_model_dir, flag + '.supertag.txt') with open(supertag_output_file, 'w', encoding='utf8') as f: for line in output_suppertag_list: f.write(line + '\n') command = 'java -jar ' + ccgparse + ' -f ' + supertag_output_file + ' -o ' + auto_output_file + ' >' + auto_output_file subprocess.run(command, shell=True) dep_output_file = os.path.join(output_model_dir, flag + '.dep') command = './auto2dep.sh ' + candc_path + ' ' + auto_output_file + ' ' + dep_output_file subprocess.run(command, shell=True) eval_output_file = os.path.join(output_model_dir, flag + '.eval') tag_gold = os.path.join(args.eval_data_dir, 'gold_files', flag + '.stagged') dep_gold = os.path.join(args.eval_data_dir, 'gold_files', flag + '.dep.gold') command = 'python ccg_eval.py -r ' + tag_gold + ' ' + dep_gold + ' ' \ + dep_output_file + ' ' + auto_output_file + ' >' + eval_output_file subprocess.run(command, shell=True) results = evaluator.eval_file_reader(eval_output_file) for key, value in results.items(): h_key = flag + '_' + key if h_key in history: history[h_key].append(value) log_info = [] for key, value in history.items(): log_info.append(key) log_info.append(str(value[-1])) info_str = ' '.join(log_info) logger.info(info_str) if history['dev_acc'][-1] > best_eval: best_eval = history['dev_acc'][-1] best_info_str = info_str num_of_no_improvement = 0 model_to_save = supertagger.module if hasattr( supertagger, 'module') else supertagger best_eval_model_dir = os.path.join(output_model_dir, 'model') if not os.path.exists(best_eval_model_dir): os.mkdir(best_eval_model_dir) model_to_save.save_model(best_eval_model_dir, args.bert_model) else: num_of_no_improvement += 1 if num_of_no_improvement >= patient: logger.info('\nEarly stop triggered at epoch %d\n' % epoch) break logger.info("\n======= best ========\n") logger.info(best_info_str) logger.info("\n======= best ========\n") with open(os.path.join(output_model_dir, 'history.json'), 'w', encoding='utf8') as f: json.dump(history, f) f.write('\n')
def main(): parser = ArgumentParser() parser.add_argument('--pregenerated_data', type=Path, required=True) parser.add_argument('--output_dir', type=Path, required=True) parser.add_argument( "--bert_model", type=str, required=True, help="Bert pre-trained model selected in the list: bert-base-uncased, " "bert-large-uncased, bert-base-cased, bert-base-multilingual, bert-base-chinese." ) parser.add_argument("--do_lower_case", action="store_true") parser.add_argument( "--reduce_memory", action="store_true", help= "Store training data as on-disc memmaps to massively reduce memory usage" ) parser.add_argument("--epochs", type=int, default=3, help="Number of epochs to train for") parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus") parser.add_argument("--no_cuda", action='store_true', help="Whether not to use CUDA when available") parser.add_argument( '--gradient_accumulation_steps', type=int, default=1, help= "Number of updates steps to accumulate before performing a backward/update pass." ) parser.add_argument("--train_batch_size", default=32, type=int, help="Total batch size for training.") parser.add_argument( '--fp16', action='store_true', help="Whether to use 16-bit float precision instead of 32-bit") parser.add_argument( '--loss_scale', type=float, default=0, help= "Loss scaling to improve fp16 numeric stability. Only used when fp16 set to True.\n" "0 (default value): dynamic loss scaling.\n" "Positive power of 2: static loss scaling value.\n") parser.add_argument( "--warmup_proportion", default=0.1, type=float, help= "Proportion of training to perform linear learning rate warmup for. " "E.g., 0.1 = 10%% of training.") parser.add_argument("--learning_rate", default=3e-5, type=float, help="The initial learning rate for Adam.") parser.add_argument('--seed', type=int, default=42, help="random seed for initialization") args = parser.parse_args() assert args.pregenerated_data.is_dir(), \ "--pregenerated_data should point to the folder of files made by pregenerate_training_data.py!" samples_per_epoch = [] for i in range(args.epochs): epoch_file = args.pregenerated_data / f"epoch_{i}.json" metrics_file = args.pregenerated_data / f"epoch_{i}_metrics.json" if epoch_file.is_file() and metrics_file.is_file(): metrics = json.loads(metrics_file.read_text()) samples_per_epoch.append(metrics['num_training_examples']) else: if i == 0: exit("No training data was found!") print( f"Warning! There are fewer epochs of pregenerated data ({i}) than training epochs ({args.epochs})." ) print( "This script will loop over the available data, but training diversity may be negatively impacted." ) num_data_epochs = i break else: num_data_epochs = args.epochs if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logging.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if args.output_dir.is_dir() and list(args.output_dir.iterdir()): logging.warning( f"Output directory ({args.output_dir}) already exists and is not empty!" ) args.output_dir.mkdir(parents=True, exist_ok=True) tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case) total_train_examples = 0 for i in range(args.epochs): # The modulo takes into account the fact that we may loop over limited epochs of data total_train_examples += samples_per_epoch[i % len(samples_per_epoch)] num_train_optimization_steps = int(total_train_examples / args.train_batch_size / args.gradient_accumulation_steps) if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) # Prepare model model = BertForPreTraining.from_pretrained(args.bert_model) if args.fp16: model.half() model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) # Prepare optimizer param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule( warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 logging.info("***** Running training *****") logging.info(f" Num examples = {total_train_examples}") logging.info(" Batch size = %d", args.train_batch_size) logging.info(" Num steps = %d", num_train_optimization_steps) model.train() for epoch in range(args.epochs): epoch_dataset = PregeneratedDataset( epoch=epoch, training_path=args.pregenerated_data, tokenizer=tokenizer, num_data_epochs=num_data_epochs, reduce_memory=args.reduce_memory) if args.local_rank == -1: train_sampler = RandomSampler(epoch_dataset) else: train_sampler = DistributedSampler(epoch_dataset) train_dataloader = DataLoader(epoch_dataset, sampler=train_sampler, batch_size=args.train_batch_size) tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 with tqdm(total=len(train_dataloader), desc=f"Epoch {epoch}") as pbar: for step, batch in enumerate(train_dataloader): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, lm_label_ids, is_next = batch loss = model(input_ids, segment_ids, input_mask, lm_label_ids, is_next) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 pbar.update(1) mean_loss = tr_loss * args.gradient_accumulation_steps / nb_tr_steps pbar.set_postfix_str(f"Loss: {mean_loss:.5f}") if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * warmup_linear.get_lr( global_step, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 # Save a trained model logging.info("** ** * Saving fine-tuned model ** ** * ") model_to_save = model.module if hasattr( model, 'module') else model # Only save the model it-self output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME) output_config_file = os.path.join(args.output_dir, CONFIG_NAME) torch.save(model_to_save.state_dict(), output_model_file) model_to_save.config.to_json_file(output_config_file) tokenizer.save_vocabulary(args.output_dir)
def rcml_main(args): logger.info('KB-ALBERT 조항 분류기 동작') if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logger.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) torch.cuda.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if os.path.exists(args.output_dir) and os.listdir( args.output_dir) and args.do_train: raise ValueError( "Output directory ({}) already exists and is not empty.".format( args.output_dir)) if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) if args.multi_label: processor = MultiLabelProcessor() else: processor = MultiClassProcessor() converter = convert_examples_to_features label_list = processor.get_labels(args.data_dir) label_map = {i: label for i, label in enumerate(label_list)} num_labels = len(label_list) tokenizer = KbAlbertCharTokenizer.from_pretrained(args.bert_model_path) train_sen_examples = None eval_sen_examples = None test_sen_examples = None num_train_optimization_steps = None if args.do_train: train_sen_examples = processor.get_train_examples(args.data_dir) eval_sen_examples = processor.get_dev_examples(args.data_dir) train_sen_features = converter(train_sen_examples, label_list, args.max_seq_length, tokenizer, args.multi_label) eval_sen_features = converter(eval_sen_examples, label_list, args.max_seq_length, tokenizer, args.multi_label) num_train_optimization_steps = int( len(train_sen_examples) / args.train_batch_size / args.gradient_accumulation_steps) * args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) if args.do_test: if args.do_prototype: test_sen_examples = processor.get_prototype_examples(args.data_dir) else: test_sen_examples = processor.get_test_examples(args.data_dir) test_sen_features = converter(test_sen_examples, label_list, args.max_seq_length, tokenizer, args.multi_label) # Prepare model cache_dir = args.cache_dir if args.cache_dir else os.path.join( str(PYTORCH_PRETRAINED_BERT_CACHE), 'distributed_{}'.format( args.local_rank)) config = AlbertConfig.from_pretrained(args.config_file_name, num_labels=num_labels, id2label=label_map) if args.do_train: if args.multi_label: model = MultiLabelClassification.from_pretrained( args.bert_model_path, args.bert_model_name, cache_dir=cache_dir, num_labels=num_labels) else: model = AlbertForSequenceClassification.from_pretrained( args.bert_model_path, config=config) elif args.do_test: model = torch.load( os.path.join(args.bert_model_path, args.bert_model_name)) model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) # Prepare optimizer param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if args.do_train: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) ##train_model global_step = 0 if args.do_train: # model.unfreeze_bert_encoder() if len(train_sen_features) == 0: logger.info( "The number of train_features is zero. Please check the tokenization. " ) sys.exit() logger.info("***** Running training *****") logger.info(" Num examples = %d", len(train_sen_examples)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) train_sen_input_ids = torch.tensor( [f.input_ids for f in train_sen_features], dtype=torch.long) train_sen_input_mask = torch.tensor( [f.input_mask for f in train_sen_features], dtype=torch.long) train_sen_segment_ids = torch.tensor( [f.segment_ids for f in train_sen_features], dtype=torch.long) train_sen_label_ids = torch.tensor( [f.label_id for f in train_sen_features], dtype=torch.long) eval_sen_input_ids = torch.tensor( [f.input_ids for f in eval_sen_features], dtype=torch.long) eval_sen_input_mask = torch.tensor( [f.input_mask for f in eval_sen_features], dtype=torch.long) eval_sen_segment_ids = torch.tensor( [f.segment_ids for f in eval_sen_features], dtype=torch.long) eval_sen_label_ids = torch.tensor( [f.label_id for f in eval_sen_features], dtype=torch.long) train_sen_data = TensorDataset(train_sen_input_ids, train_sen_input_mask, train_sen_segment_ids, train_sen_label_ids) eval_sen_data = TensorDataset(eval_sen_input_ids, eval_sen_input_mask, eval_sen_segment_ids, eval_sen_label_ids) train_sen_dataloader = DataLoader( train_sen_data, batch_size=args.train_batch_size, worker_init_fn=lambda _: np.random.seed()) eval_sen_dataloader = DataLoader(eval_sen_data, batch_size=args.train_batch_size) train_loss_values, valid_loss_values = [], [] train_acc, valid_acc = [], [] train_f1, valid_f1 = [], [] for epoch in trange(int(args.num_train_epochs), desc="Epoch"): model.train() tr_loss, tr_accuracy = 0, 0 nb_tr_examples, nb_tr_steps = 0, 0 total_loss = 0 tr_predicted_labels, tr_target_labels = list(), list() for step, train_sen_batch in enumerate( tqdm(train_sen_dataloader, total=len(train_sen_dataloader), desc="Iteration")): train_sen_batch = tuple(t.to(device) for t in train_sen_batch) sen_input_ids, sen_input_mask, sen_segment_ids, train_sen_label_ids = train_sen_batch output = model(input_ids=sen_input_ids, attention_mask=sen_input_mask, position_ids=None, token_type_ids=sen_segment_ids, labels=train_sen_label_ids) loss = output[0] loss.backward() total_loss += loss.item() logits = output[1] label_ids = train_sen_label_ids.to('cpu').numpy() if args.multi_label: tr_predicted_labels.extend( torch.sigmoid( logits).round().long().cpu().detach().numpy()) tr_target_labels.extend(label_ids) else: argmax_logits = np.argmax(torch.softmax( logits, dim=1).detach().cpu().numpy(), axis=1) tr_predicted_labels.extend(argmax_logits) tr_target_labels.extend(label_ids) if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * WarmupLinearSchedule( global_step / num_train_optimization_steps, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 tr_loss = total_loss / len(train_sen_dataloader) train_loss_values.append(tr_loss) acc = metrics.accuracy_score(tr_target_labels, tr_predicted_labels) f1 = metrics.f1_score(tr_target_labels, tr_predicted_labels, average='macro') train_acc.append(acc) train_f1.append(f1) logger.info('') logger.info( '################### epoch ################### : {}'.format( epoch + 1)) logger.info( '################### train loss ###################: {}'. format(tr_loss)) logger.info( '################### train accuracy ###############: {}'. format(acc)) logger.info( '################### train f1 score ###############: {}'. format(f1)) eval_loss = 0 ev_predicted_labels, ev_target_labels = list(), list() for eval_sen_batch in eval_sen_dataloader: eval_sen_batch = tuple(t.to(device) for t in eval_sen_batch) eval_sen_input_ids, eval_sen_input_mask, eval_sen_segment_ids, eval_label_ids = eval_sen_batch with torch.no_grad(): model.eval() output = model(input_ids=eval_sen_input_ids, attention_mask=eval_sen_input_mask, position_ids=None, token_type_ids=eval_sen_segment_ids, labels=eval_label_ids) logits = output[1] label_ids = eval_label_ids.to('cpu').numpy() if args.multi_label: ev_predicted_labels.extend( torch.sigmoid( logits).round().long().cpu().detach().numpy()) ev_target_labels.extend(label_ids) else: argmax_logits = np.argmax(torch.softmax( logits, dim=1).detach().cpu().numpy(), axis=1) ev_predicted_labels.extend(argmax_logits) ev_target_labels.extend(label_ids) eval_loss += output[0].mean().item() ev_loss = eval_loss / len(eval_sen_dataloader) valid_loss_values.append(ev_loss) acc = metrics.accuracy_score(ev_target_labels, ev_predicted_labels) f1 = metrics.f1_score(ev_target_labels, ev_predicted_labels, average='macro') valid_acc.append(acc) valid_f1.append(f1) logger.info('') logger.info( '################### epoch ################### : {}'.format( epoch + 1)) logger.info( '################### valid loss ###################: {}'. format(ev_loss)) logger.info( '################### valid accuracy ###############: {}'. format(acc)) logger.info( '################### valid f1 score ###############: {}'. format(f1)) model_to_save = model.module if hasattr(model, 'module') else model if (epoch + 1) % 1 == 0: torch.save(model_to_save.state_dict(), './model/eval_model/{}_epoch.bin'.format(epoch + 1)) torch.save(model, './model/eval_model/{}_epoch.pt'.format(epoch + 1)) save_training_result = train_loss_values, train_acc, train_f1, valid_loss_values, valid_acc, valid_f1 with open('./output_dir/training_history.pkl', 'wb') as f: pickle.dump(save_training_result, f) if args.do_test: # logger.info("***** Running prediction *****") # logger.info(" Num examples = %d", len(test_sen_examples)) # logger.info(" Batch size = %d", args.eval_batch_size) test_sen_input_ids = torch.tensor( [f.input_ids for f in test_sen_features], dtype=torch.long) test_sen_input_mask = torch.tensor( [f.input_mask for f in test_sen_features], dtype=torch.long) test_sen_segment_ids = torch.tensor( [f.segment_ids for f in test_sen_features], dtype=torch.long) test_sen_label_ids = torch.tensor( [f.label_id for f in test_sen_features], dtype=torch.long) test_sen_data = TensorDataset(test_sen_input_ids, test_sen_input_mask, test_sen_segment_ids, test_sen_label_ids) # Run prediction for full data test_sen_sampler = SequentialSampler(test_sen_data) test_sen_dataloader = DataLoader(test_sen_data, batch_size=args.eval_batch_size) all_labels, all_logits = None, None te_predicted_labels, te_target_labels = list(), list() for test_sen_batch in tqdm(test_sen_dataloader, total=len(test_sen_dataloader), desc='Prediction'): test_sen_batch = tuple(t.to(device) for t in test_sen_batch) test_sen_input_ids, test_sen_input_mask, test_sen_segment_ids, test_label_ids = test_sen_batch with torch.no_grad(): model.eval() output = model(input_ids=test_sen_input_ids, attention_mask=test_sen_input_mask, position_ids=None, token_type_ids=test_sen_segment_ids) logits = output[0] label_ids = test_label_ids.to('cpu').numpy() if args.multi_label: te_predicted_labels.extend( torch.sigmoid( logits).round().long().cpu().detach().numpy()) te_target_labels.extend(label_ids) else: argmax_logits = np.argmax(torch.softmax( logits, dim=1).detach().cpu().numpy(), axis=1) te_predicted_labels.extend(argmax_logits) te_target_labels.extend(label_ids) logits = output[0].detach().cpu().numpy() if all_logits is None: all_logits = logits else: all_logits = np.concatenate((all_logits, logits), axis=0) if all_labels is None: all_labels = label_ids else: all_labels = np.concatenate((all_labels, label_ids), axis=0) acc = metrics.accuracy_score(te_target_labels, te_predicted_labels) f1 = metrics.f1_score(te_target_labels, te_predicted_labels, average='macro') # logger.info('################### test accuracy ###############: {}'.format(acc)) # logger.info('################### test f1 score ###############: {}'.format(f1)) input_data = [{ 'text': input_example.text_a } for input_example in test_sen_examples] # pred_result = pd.DataFrame(all_logits, columns=label_list) pred_result = pd.DataFrame(te_predicted_labels) real_text = pd.DataFrame(input_data) real_label = pd.DataFrame(all_labels) real_result = pd.concat([real_text, pred_result], axis=1) real_result.columns = ['text', 'predict_label'] real_result.to_excel('./output_dir/output_classification.xlsx', index=None)
def main(): # def main(args): parser = setup_parser() args = parser.parse_args() # specifies the path where the biobert or clinical bert model is saved if args.bert_model == 'biobert' or args.bert_model == 'clinical_bert' or args.bert_model == 'stroke_bert' or args.bert_model == 'stroke_biobased_bert': args.bert_model = args.model_loc print(args.bert_model) if args.server_ip and args.server_port: # Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script import ptvsd print("Waiting for debugger attach") ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True) ptvsd.wait_for_attach() processors = { "cola": ColaProcessor, "mnli": MnliProcessor, "mrpc": MrpcProcessor, "mednli": MedNLIProcessor, "carotid": CaroditProcessor, "restroke": RestrokeProcessor } num_labels_task = { "cola": 2, "mnli": 3, "mrpc": 2, "mednli": 3, "carotid": 17, "restroke": 2 } if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logger.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_eval: raise ValueError( "At least one of `do_train` or `do_eval` must be True.") if os.path.exists(args.output_dir) and os.listdir( args.output_dir) and args.do_train: raise ValueError( "Output directory ({}) already exists and is not empty.".format( args.output_dir)) if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) task_name = args.task_name.lower() if task_name not in processors: raise ValueError("Task not found: %s" % (task_name)) processor = processors[task_name]() num_labels = num_labels_task[task_name] label_list = processor.get_labels() tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case) if tokenizer is None: tokenizer = BertTokenizer.from_pretrained( args.vocab_loc, do_lower_case=args.do_lower_case) print('TRAIN') train = processor.get_train_examples(args.data_dir) print([(train[i].text_a, train[i].text_b, train[i].label) for i in range(3)]) print('DEV') dev = processor.get_dev_examples(args.data_dir) print([(dev[i].text_a, dev[i].text_b, dev[i].label) for i in range(3)]) print('TEST') test = processor.get_test_examples(args.data_dir) print([(test[i].text_a, test[i].text_b, test[i].label) for i in range(3)]) train_examples = None num_train_optimization_steps = -1 if args.do_train: train_examples = processor.get_train_examples(args.data_dir) num_train_optimization_steps = int( len(train_examples) / args.train_batch_size / args.gradient_accumulation_steps) * args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) # Prepare model cache_dir = args.cache_dir if args.cache_dir else os.path.join( PYTORCH_PRETRAINED_BERT_CACHE, 'distributed_{}'.format( args.local_rank)) if task_name == 'carotid': model = BertForMultiLabelSequenceClassification.from_pretrained( args.bert_model, cache_dir=cache_dir, num_labels=num_labels) else: model = BertForSequenceClassification.from_pretrained( args.bert_model, cache_dir=cache_dir, num_labels=num_labels) if args.fp16: model.half() model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) # Prepare optimizer param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 nb_tr_steps = 0 tr_loss = 0 if args.do_train: train_features = convert_examples_to_features(train_examples, label_list, args.max_seq_length, tokenizer, task_name) logger.info("***** Running training *****") logger.info(" Num examples = %d", len(train_examples)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) all_input_ids = torch.tensor([f.input_ids for f in train_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in train_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in train_features], dtype=torch.long) if task_name == 'carotid': all_label_ids = torch.tensor([f.label_id for f in train_features], dtype=torch.float) else: all_label_ids = torch.tensor([f.label_id for f in train_features], dtype=torch.long) train_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) model.train() for _ in trange(int(args.num_train_epochs), desc="Epoch"): tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 for step, batch in enumerate( tqdm(train_dataloader, desc="Iteration")): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, label_ids = batch loss = model(input_ids, segment_ids, input_mask, label_ids) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * WarmupLinearSchedule( global_step / num_train_optimization_steps, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 if args.do_train: # Save a trained model and the associated configuration model_to_save = model.module if hasattr( model, 'module') else model # Only save the model it-self output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME) torch.save(model_to_save.state_dict(), output_model_file) output_config_file = os.path.join(args.output_dir, CONFIG_NAME) with open(output_config_file, 'w') as f: f.write(model_to_save.config.to_json_string()) # Load a trained model and config that you have fine-tuned config = BertConfig(output_config_file) if task_name == 'carotid': model = BertForMultiLabelSequenceClassification( config, num_labels=num_labels) else: model = BertForSequenceClassification(config, num_labels=num_labels) model.load_state_dict(torch.load(output_model_file)) else: if task_name == 'carotid': model = BertForMultiLabelSequenceClassification.from_pretrained( args.bert_model, num_labels=num_labels) else: model = BertForSequenceClassification.from_pretrained( args.bert_model, num_labels=num_labels) model.to(device) if args.do_eval and (args.local_rank == -1 or torch.distributed.get_rank() == 0): eval_examples = processor.get_dev_examples(args.data_dir) eval_features = convert_examples_to_features(eval_examples, label_list, args.max_seq_length, tokenizer, task_name) logger.info("***** Running evaluation *****") logger.info(" Num examples = %d", len(eval_examples)) logger.info(" Batch size = %d", args.eval_batch_size) all_input_ids = torch.tensor([f.input_ids for f in eval_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in eval_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in eval_features], dtype=torch.long) if task_name == 'carotid': all_label_ids = torch.tensor([f.label_id for f in eval_features], dtype=torch.float) else: all_label_ids = torch.tensor([f.label_id for f in eval_features], dtype=torch.long) eval_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) # Run prediction for full data eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size) all_logits = None all_labels = None model.eval() eval_loss, eval_accuracy = 0, 0 nb_eval_steps, nb_eval_examples = 0, 0 for input_ids, input_mask, segment_ids, label_ids in tqdm( eval_dataloader, desc="Evaluating"): input_ids = input_ids.to(device) input_mask = input_mask.to(device) segment_ids = segment_ids.to(device) label_ids = label_ids.to(device) with torch.no_grad(): tmp_eval_loss = model(input_ids, segment_ids, input_mask, label_ids) logits = model(input_ids, segment_ids, input_mask) if task_name == 'carotid': if all_logits is None: all_logits = logits.detach().cpu().numpy() else: all_logits = np.concatenate( (all_logits, logits.detach().cpu().numpy()), axis=0) if all_labels is None: all_labels = label_ids.detach().cpu().numpy() else: all_labels = np.concatenate( (all_labels, label_ids.detach().cpu().numpy()), axis=0) else: logits = logits.detach().cpu().numpy() label_ids = label_ids.to('cpu').numpy() tmp_eval_accuracy = accuracy(logits, label_ids) eval_loss += tmp_eval_loss.mean().item() eval_accuracy += tmp_eval_accuracy nb_eval_examples += input_ids.size(0) nb_eval_steps += 1 if task_name == 'carotid': fpr = dict() tpr = dict() roc_auc = dict() for i in range(num_labels): fpr[i], tpr[i], _ = roc_curve(all_labels[:, i], all_logits[:, i]) roc_auc[i] = auc(fpr[i], tpr[i]) # Compute micro-average ROC curve and ROC area fpr["micro"], tpr["micro"], _ = roc_curve(all_labels.ravel(), all_logits.ravel()) roc_auc["micro"] = auc(fpr["micro"], tpr["micro"]) save_path = os.path.join(args.output_dir, "eval_prediction.pickle") predic_result = { 'all_logits': all_logits, 'all_labels': all_labels } with open(save_path, 'wb') as file_pi: pickle.dump(predic_result, file_pi) result = {'eval_loss': eval_loss, 'roc_auc': roc_auc} else: eval_loss = eval_loss / nb_eval_steps eval_accuracy = eval_accuracy / nb_eval_examples loss = tr_loss / nb_tr_steps if args.do_train else None result = { 'eval_loss': eval_loss, 'eval_accuracy': eval_accuracy, 'global_step': global_step, 'loss': loss } output_eval_file = os.path.join(args.output_dir, "eval_results.txt") with open(output_eval_file, "w") as writer: logger.info("***** Eval results *****") for key in sorted(result.keys()): logger.info(" %s = %s", key, str(result[key])) writer.write("%s = %s\n" % (key, str(result[key]))) if args.do_test and (args.local_rank == -1 or torch.distributed.get_rank() == 0): test_examples = processor.get_test_examples(args.data_dir) test_features = convert_examples_to_features(test_examples, label_list, args.max_seq_length, tokenizer, task_name) logger.info("***** Running testing *****") logger.info(" Num examples = %d", len(test_examples)) logger.info(" Batch size = %d", args.eval_batch_size) all_input_ids = torch.tensor([f.input_ids for f in test_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in test_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in test_features], dtype=torch.long) if task_name == 'carotid': all_label_ids = torch.tensor([f.label_id for f in test_features], dtype=torch.float) else: all_label_ids = torch.tensor([f.label_id for f in test_features], dtype=torch.long) test_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) # Run prediction for full data test_sampler = SequentialSampler(test_data) test_dataloader = DataLoader(test_data, sampler=test_sampler, batch_size=args.eval_batch_size) all_logits = None all_labels = None model.eval() test_loss, test_accuracy = 0, 0 nb_test_steps, nb_test_examples = 0, 0 for input_ids, input_mask, segment_ids, label_ids in tqdm( test_dataloader, desc="Testing"): input_ids = input_ids.to(device) input_mask = input_mask.to(device) segment_ids = segment_ids.to(device) label_ids = label_ids.to(device) with torch.no_grad(): tmp_test_loss = model(input_ids, segment_ids, input_mask, label_ids) logits = model(input_ids, segment_ids, input_mask) if task_name == 'carotid': if all_logits is None: all_logits = logits.detach().cpu().numpy() else: all_logits = np.concatenate( (all_logits, logits.detach().cpu().numpy()), axis=0) if all_labels is None: all_labels = label_ids.detach().cpu().numpy() else: all_labels = np.concatenate( (all_labels, label_ids.detach().cpu().numpy()), axis=0) else: logits = logits.detach().cpu().numpy() if all_logits is None: all_logits = logits else: all_logits = np.concatenate((all_logits, logits), axis=0) label_ids = label_ids.to('cpu').numpy() if all_labels is None: all_labels = label_ids else: all_labels = np.concatenate((all_labels, label_ids), axis=0) tmp_test_accuracy = accuracy(logits, label_ids) test_loss += tmp_test_loss.mean().item() test_accuracy += tmp_test_accuracy nb_test_examples += input_ids.size(0) nb_test_steps += 1 if task_name == 'carotid': fpr = dict() tpr = dict() roc_auc = dict() for i in range(num_labels): fpr[i], tpr[i], _ = roc_curve(all_labels[:, i], all_logits[:, i]) roc_auc[i] = auc(fpr[i], tpr[i]) # Compute micro-average ROC curve and ROC area fpr["micro"], tpr["micro"], _ = roc_curve(all_labels.ravel(), all_logits.ravel()) roc_auc["micro"] = auc(fpr["micro"], tpr["micro"]) save_path = os.path.join(args.output_dir, "test_prediction.pickle") predic_result = { 'all_logits': all_logits, 'all_labels': all_labels } with open(save_path, 'wb') as file_pi: pickle.dump(predic_result, file_pi) result = {'test_loss': test_loss, 'roc_auc': roc_auc} else: test_loss = test_loss / nb_test_steps test_accuracy = test_accuracy / nb_test_examples loss = tr_loss / nb_tr_steps if args.do_train else None save_path = os.path.join(args.output_dir, "test_prediction.pickle") predic_result = { 'all_logits': all_logits, 'all_labels': all_labels } with open(save_path, 'wb') as file_pi: pickle.dump(predic_result, file_pi) result = { 'test_loss': test_loss, 'test_accuracy': test_accuracy, 'global_step': global_step, 'loss': loss } output_test_file = os.path.join(args.output_dir, "test_results.txt") with open(output_test_file, "w") as writer: logger.info("***** Test results *****") for key in sorted(result.keys()): logger.info(" %s = %s", key, str(result[key])) writer.write("%s = %s\n" % (key, str(result[key])))
def main(): parser = argparse.ArgumentParser() # Required parameters parser.add_argument( "--bert_model", default=None, type=str, required=True, help="Bert pre-trained model selected in the list: bert-base-uncased, " "bert-large-uncased, bert-base-cased, bert-base-multilingual, bert-base-chinese." ) parser.add_argument("--vocab_file", default='bert-base-uncased-vocab.txt', type=str, required=True) parser.add_argument("--model_file", default='bert-base-uncased.tar.gz', type=str, required=True) parser.add_argument( "--output_dir", default=None, type=str, required=True, help= "The output directory where the model checkpoints and predictions will be written." ) parser.add_argument( "--predict_dir", default=None, type=str, required=True, help="The output directory where the predictions will be written.") # Other parameters parser.add_argument("--train_file", default=None, type=str, help="SQuAD json for training. E.g., train-v1.1.json") parser.add_argument( "--predict_file", default=None, type=str, help="SQuAD json for predictions. E.g., dev-v1.1.json or test-v1.1.json" ) parser.add_argument( "--max_seq_length", default=384, type=int, help= "The maximum total input sequence length after WordPiece tokenization. Sequences " "longer than this will be truncated, and sequences shorter than this will be padded." ) parser.add_argument( "--doc_stride", default=128, type=int, help= "When splitting up a long document into chunks, how much stride to take between chunks." ) parser.add_argument( "--max_query_length", default=64, type=int, help= "The maximum number of tokens for the question. Questions longer than this will " "be truncated to this length.") parser.add_argument("--do_train", default=False, action='store_true', help="Whether to run training.") parser.add_argument("--do_predict", default=False, action='store_true', help="Whether to run eval on the dev set.") parser.add_argument("--train_batch_size", default=32, type=int, help="Total batch size for training.") parser.add_argument("--predict_batch_size", default=8, type=int, help="Total batch size for predictions.") parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.") parser.add_argument("--num_train_epochs", default=2.0, type=float, help="Total number of training epochs to perform.") parser.add_argument( "--warmup_proportion", default=0.1, type=float, help= "Proportion of training to perform linear learning rate warmup for. E.g., 0.1 = 10% " "of training.") parser.add_argument( "--n_best_size", default=20, type=int, help= "The total number of n-best predictions to generate in the nbest_predictions.json " "output file.") parser.add_argument( "--max_answer_length", default=30, type=int, help= "The maximum length of an answer that can be generated. This is needed because the start " "and end predictions are not conditioned on one another.") parser.add_argument( "--verbose_logging", default=False, action='store_true', help= "If true, all of the warnings related to data processing will be printed. " "A number of warnings are expected for a normal SQuAD evaluation.") parser.add_argument("--no_cuda", default=False, action='store_true', help="Whether not to use CUDA when available") parser.add_argument('--seed', type=int, default=42, help="random seed for initialization") parser.add_argument('--view_id', type=int, default=1, help="view id of multi-view co-training(two-view)") parser.add_argument( '--gradient_accumulation_steps', type=int, default=1, help= "Number of updates steps to accumulate before performing a backward/update pass." ) parser.add_argument( "--do_lower_case", default=True, action='store_true', help= "Whether to lower case the input text. True for uncased models, False for cased models." ) parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus") parser.add_argument( '--fp16', default=False, action='store_true', help="Whether to use 16-bit float precision instead of 32-bit") parser.add_argument( '--loss_scale', type=float, default=0, help= "Loss scaling to improve fp16 numeric stability. Only used when fp16 set to True.\n" "0 (default value): dynamic loss scaling.\n" "Positive power of 2: static loss scaling value.\n") # Base setting parser.add_argument('--pretrain', type=str, default=None) parser.add_argument('--max_ctx', type=int, default=2) parser.add_argument('--task_name', type=str, default='coqa_yesno') parser.add_argument('--bert_name', type=str, default='baseline') parser.add_argument('--reader_name', type=str, default='coqa') # model parameters parser.add_argument('--evidence_lambda', type=float, default=0.8) parser.add_argument('--tf_layers', type=int, default=1) parser.add_argument('--tf_inter_size', type=int, default=3072) # Parameters for running labeling model parser.add_argument('--do_label', default=False, action='store_true') parser.add_argument('--sentence_id_files', nargs='*') parser.add_argument('--weight_threshold', type=float, default=0.0) parser.add_argument('--only_correct', default=False, action='store_true') parser.add_argument('--label_threshold', type=float, default=0.0) args = parser.parse_args() logger = setting_logger(args.output_dir) logger.info('================== Program start. ========================') model_params = prepare_model_params(args) read_params = prepare_read_params(args) if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logger.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(args.gradient_accumulation_steps)) args.train_batch_size = int(args.train_batch_size / args.gradient_accumulation_steps) random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_predict: raise ValueError( "At least one of `do_train` or `do_predict` must be True.") if args.do_train: if not args.train_file: raise ValueError( "If `do_train` is True, then `train_file` must be specified.") if args.do_predict: if not args.predict_file: raise ValueError( "If `do_predict` is True, then `predict_file` must be specified." ) if args.do_train: if os.path.exists(args.output_dir) and os.listdir(args.output_dir): raise ValueError( "Output directory () already exists and is not empty.") os.makedirs(args.output_dir, exist_ok=True) if args.do_predict: os.makedirs(args.predict_dir, exist_ok=True) tokenizer = BertTokenizer.from_pretrained(args.vocab_file) data_reader = initialize_reader(args.reader_name) num_train_steps = None if args.do_train or args.do_label: train_examples = data_reader.read(input_file=args.train_file, **read_params) cached_train_features_file = args.train_file + '_{0}_{1}_{2}_{3}_{4}_{5}'.format( args.bert_model, str(args.max_seq_length), str(args.doc_stride), str(args.max_query_length), str(args.max_ctx), str(args.task_name)) try: with open(cached_train_features_file, "rb") as reader: train_features = pickle.load(reader) except FileNotFoundError: train_features = data_reader.convert_examples_to_features( examples=train_examples, tokenizer=tokenizer, max_seq_length=args.max_seq_length, doc_stride=args.doc_stride, max_query_length=args.max_query_length, is_training=True) if args.local_rank == -1 or torch.distributed.get_rank() == 0: logger.info(" Saving train features into cached file %s", cached_train_features_file) with open(cached_train_features_file, "wb") as writer: pickle.dump(train_features, writer) print(train_features[-1].unique_id) num_train_steps = int( len(train_features) / args.train_batch_size / args.gradient_accumulation_steps * args.num_train_epochs) # Prepare model if args.pretrain is not None: logger.info('Load pretrained model from {}'.format(args.pretrain)) model_state_dict = torch.load(args.pretrain, map_location='cuda:0') model = initialize_model(args.bert_name, args.model_file, state_dict=model_state_dict, **model_params) else: model = initialize_model(args.bert_name, args.model_file, **model_params) if args.fp16: model.half() model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) # Prepare optimizer param_optimizer = list(model.named_parameters()) # hack to remove pooler, which is not used # thus it produce None grad that break apex param_optimizer = [n for n in param_optimizer if 'pooler' not in n[0]] no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] t_total = num_train_steps if args.local_rank != -1: t_total = t_total // torch.distributed.get_world_size() if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule(warmup=args.warmup_proportion, t_total=t_total) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=t_total) warmup_linear = WarmupLinearSchedule(warmup=args.warmup_proportion, t_total=t_total) # Prepare data eval_examples = data_reader.read(input_file=args.predict_file, **read_params) eval_features = data_reader.convert_examples_to_features( examples=eval_examples, tokenizer=tokenizer, max_seq_length=args.max_seq_length, doc_stride=args.doc_stride, max_query_length=args.max_query_length, is_training=False) eval_tensors = data_reader.data_to_tensors(eval_features) eval_data = TensorDataset(*eval_tensors) eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.predict_batch_size) if args.do_train: if args.do_label: logger.info('Training in State Wise.') sentence_id_file_list = args.sentence_id_files if sentence_id_file_list is not None: for file in sentence_id_file_list: train_features = data_reader.generate_features_sentence_ids( train_features, file) else: train_features = data_reader.mask_all_sentence_ids( train_features) logger.info('No sentence id supervision is found.') else: logger.info('Training in traditional way.') logger.info("Start training") train_loss = AverageMeter() best_acc = 0.0 summary_writer = SummaryWriter(log_dir=args.output_dir) global_step = 0 eval_loss = AverageMeter() train_tensors = data_reader.data_to_tensors(train_features) train_data = TensorDataset(*train_tensors) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) for epoch in trange(int(args.num_train_epochs), desc="Epoch"): # Train model.train() for step, batch in enumerate( tqdm(train_dataloader, desc="Iteration")): if n_gpu == 1: batch = batch_to_device( batch, device) # multi-gpu does scattering it-self inputs = data_reader.generate_inputs( batch, train_features, do_label=args.do_label, model_state=ModelState.Train) loss = model(**inputs)['loss'] if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() if (step + 1) % args.gradient_accumulation_steps == 0: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used and handles this automatically lr_this_step = args.learning_rate * warmup_linear.get_lr( global_step / t_total, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step if args.fp16: summary_writer.add_scalar('lr', lr_this_step, global_step) else: summary_writer.add_scalar('lr', optimizer.get_lr()[0], global_step) optimizer.step() optimizer.zero_grad() global_step += 1 train_loss.update(loss.item(), args.train_batch_size) summary_writer.add_scalar('train_loss', train_loss.avg, global_step) summary_writer.add_scalar('lr', optimizer.get_lr()[0], global_step) # Evaluation model.eval() all_results = [] logger.info("Start evaluating") for eval_step, batch in enumerate( tqdm(eval_dataloader, desc="Evaluating")): if n_gpu == 1: batch = batch_to_device( batch, device) # multi-gpu does scattering it-self inputs = data_reader.generate_inputs( batch, eval_features, do_label=args.do_label, model_state=ModelState.Evaluate) with torch.no_grad(): output_dict = model(**inputs) loss, batch_choice_logits = output_dict[ 'loss'], output_dict['yesno_logits'] eval_loss.update(loss.item(), args.predict_batch_size) example_indices = batch[-1] for i, example_index in enumerate(example_indices): choice_logits = batch_choice_logits[i].detach().cpu( ).tolist() eval_feature = eval_features[example_index.item()] unique_id = int(eval_feature.unique_id) all_results.append( RawResultChoice(unique_id=unique_id, choice_logits=choice_logits)) summary_writer.add_scalar('eval_loss', eval_loss.avg, epoch) eval_loss.reset() data_reader.write_predictions(eval_examples, eval_features, all_results, None, null_score_diff_threshold=0.0) yes_metric = data_reader.yesno_cate.f1_measure('yes', 'no') no_metric = data_reader.yesno_cate.f1_measure('no', 'yes') current_acc = yes_metric['accuracy'] summary_writer.add_scalar('eval_yes_f1', yes_metric['f1'], epoch) summary_writer.add_scalar('eval_yes_recall', yes_metric['recall'], epoch) summary_writer.add_scalar('eval_yes_precision', yes_metric['precision'], epoch) summary_writer.add_scalar('eval_no_f1', no_metric['f1'], epoch) summary_writer.add_scalar('eval_no_recall', no_metric['recall'], epoch) summary_writer.add_scalar('eval_no_precision', no_metric['precision'], epoch) summary_writer.add_scalar('eval_yesno_acc', current_acc, epoch) torch.cuda.empty_cache() if current_acc > best_acc: best_acc = current_acc model_to_save = model.module if hasattr( model, 'module') else model # Only save the model it-self output_model_file = os.path.join(args.output_dir, "pytorch_model.bin") torch.save(model_to_save.state_dict(), output_model_file) logger.info('Epoch: %d, Accuracy: %f (Best Accuracy: %f)' % (epoch, current_acc, best_acc)) data_reader.yesno_cate.reset() summary_writer.close() # Loading trained model. output_model_file = os.path.join(args.output_dir, "pytorch_model.bin") model_state_dict = torch.load(output_model_file, map_location='cuda:0') model = initialize_model(args.bert_name, args.model_file, state_dict=model_state_dict, **model_params) model.to(device) # Write Yes/No predictions if args.do_predict and (args.local_rank == -1 or torch.distributed.get_rank() == 0): test_examples = eval_examples test_features = eval_features test_tensors = data_reader.data_to_tensors(test_features) test_data = TensorDataset(*test_tensors) test_sampler = SequentialSampler(test_data) test_dataloader = DataLoader(test_data, sampler=test_sampler, batch_size=args.predict_batch_size) logger.info("***** Running predictions *****") logger.info(" Num orig examples = %d", len(test_examples)) logger.info(" Num split examples = %d", len(test_features)) logger.info(" Batch size = %d", args.predict_batch_size) model.eval() all_results = [] logger.info("Start predicting yes/no on Dev set.") for batch in tqdm(test_dataloader, desc="Testing"): if n_gpu == 1: batch = batch_to_device( batch, device) # multi-gpu does scattering it-self inputs = data_reader.generate_inputs(batch, test_features, do_label=args.do_label, model_state=ModelState.Test) with torch.no_grad(): batch_choice_logits = model(**inputs)['yesno_logits'] example_indices = batch[-1] for i, example_index in enumerate(example_indices): choice_logits = batch_choice_logits[i].detach().cpu().tolist() test_feature = test_features[example_index.item()] unique_id = int(test_feature.unique_id) all_results.append( RawResultChoice(unique_id=unique_id, choice_logits=choice_logits)) output_prediction_file = os.path.join(args.predict_dir, 'predictions.json') data_reader.write_predictions(eval_examples, eval_features, all_results, output_prediction_file, null_score_diff_threshold=0.0) yes_metric = data_reader.yesno_cate.f1_measure('yes', 'no') no_metric = data_reader.yesno_cate.f1_measure('no', 'yes') logger.info('Yes Metrics: %s' % json.dumps(yes_metric, indent=2)) logger.info('No Metrics: %s' % json.dumps(no_metric, indent=2)) # Labeling sentence id. if args.do_label and (args.local_rank == -1 or torch.distributed.get_rank() == 0): test_examples = train_examples test_features = train_features test_tensors = data_reader.data_to_tensors(test_features) test_data = TensorDataset(*test_tensors) test_sampler = SequentialSampler(test_data) test_dataloader = DataLoader(test_data, sampler=test_sampler, batch_size=args.predict_batch_size) logger.info("***** Running labeling *****") logger.info(" Num orig examples = %d", len(test_examples)) logger.info(" Num split examples = %d", len(test_features)) logger.info(" Batch size = %d", args.predict_batch_size) model.eval() all_results = [] logger.info("Start labeling.") for batch in tqdm(test_dataloader, desc="Testing"): if n_gpu == 1: batch = batch_to_device(batch, device) inputs = data_reader.generate_inputs(batch, test_features, do_label=args.do_label, model_state=ModelState.Test) with torch.no_grad(): output_dict = model(**inputs) batch_choice_logits = output_dict['yesno_logits'] batch_max_weight_indexes = output_dict['max_weight_index'] batch_max_weight = output_dict['max_weight'] example_indices = batch[-1] for i, example_index in enumerate(example_indices): choice_logits = batch_choice_logits[i].detach().cpu().tolist() max_weight_index = batch_max_weight_indexes[i].detach().cpu( ).tolist() max_weight = batch_max_weight[i].detach().cpu().tolist() test_feature = test_features[example_index.item()] unique_id = int(test_feature.unique_id) all_results.append( WeightResultChoice(unique_id=unique_id, choice_logits=choice_logits, max_weight_index=max_weight_index, max_weight=max_weight)) output_prediction_file = os.path.join(args.predict_dir, 'sentence_id_file.json') data_reader.predict_sentence_ids( test_examples, test_features, all_results, output_prediction_file, weight_threshold=args.weight_threshold, only_correct=args.only_correct, label_threshold=args.label_threshold)
def main(): parser = argparse.ArgumentParser() ## Required parameters parser.add_argument( "--data_dir", default=None, type=str, required=True, help= "The input data dir. Should contain the .tsv files (or other data files) for the task." ) parser.add_argument( "--bert_model", default=None, type=str, required=True, help="Bert pre-trained model selected in the list: bert-base-uncased, " "bert-large-uncased, bert-base-cased, bert-large-cased, bert-base-multilingual-uncased, " "bert-base-multilingual-cased, bert-base-chinese.") parser.add_argument( "--output_dir", default=None, type=str, required=True, help= "The output directory where the model predictions and checkpoints will be written." ) ## Other parameters parser.add_argument( "--cache_dir", default="", type=str, help= "Where do you want to store the pre-trained models downloaded from s3") parser.add_argument( "--max_seq_length", default=128, type=int, help= "The maximum total input sequence length after WordPiece tokenization. \n" "Sequences longer than this will be truncated, and sequences shorter \n" "than this will be padded.") parser.add_argument("--do_train", action='store_true', help="Whether to run training.") parser.add_argument("--do_eval", action='store_true', help="Whether to run eval on the dev set.") parser.add_argument("--do_test", action='store_true', help="Whether to run test on the test set.") parser.add_argument( "--do_lower_case", action='store_true', help="Set this flag if you are using an uncased model.") parser.add_argument("--train_batch_size", default=32, type=int, help="Total batch size for training.") parser.add_argument("--eval_batch_size", default=8, type=int, help="Total batch size for eval.") parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.") parser.add_argument("--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform.") parser.add_argument( "--warmup_proportion", default=0.1, type=float, help= "Proportion of training to perform linear learning rate warmup for. " "E.g., 0.1 = 10%% of training.") parser.add_argument("--no_cuda", action='store_true', help="Whether not to use CUDA when available") parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus") parser.add_argument('--seed', type=int, default=42, help="random seed for initialization") parser.add_argument( '--gradient_accumulation_steps', type=int, default=1, help= "Number of updates steps to accumulate before performing a backward/update pass." ) parser.add_argument( '--fp16', action='store_true', help="Whether to use 16-bit float precision instead of 32-bit") parser.add_argument( '--loss_scale', type=float, default=0, help= "Loss scaling to improve fp16 numeric stability. Only used when fp16 set to True.\n" "0 (default value): dynamic loss scaling.\n" "Positive power of 2: static loss scaling value.\n") args = parser.parse_args() if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logging.basicConfig( format='%(asctime)s - %(levelname)s - %(name)s - %(message)s', datefmt='%m/%d/%Y %H:%M:%S', level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN) logger.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_eval and not args.do_test: raise ValueError( "At least one of `do_train` or `do_eval` or `do_test` must be True." ) if os.path.exists(args.output_dir) and os.listdir( args.output_dir) and args.do_train: raise ValueError( "Output directory ({}) already exists and is not empty.".format( args.output_dir)) if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) task_name = 'qnli' processor = QnliProcessor() output_mode = "classification" label_list = processor.get_labels() num_labels = len(label_list) # calculate train steps train_examples = None num_train_optimization_steps = None if args.do_train: train_examples = processor.get_train_examples(args.data_dir) num_train_optimization_steps = int( math.ceil(len(train_examples) / args.train_batch_size) / args.gradient_accumulation_steps) * \ args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) # Prepare (raw) model and tokenizer (for train) if args.do_train: model, tokenizer = load_raw_model_and_tokenizer(args) if args.fp16: model.half() model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) # Prepare optimizer if args.do_train: param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [ p for n, p in param_optimizer if not any(nd in n for nd in no_decay) ], 'weight_decay': 0.01 }, { 'params': [ p for n, p in param_optimizer if any(nd in n for nd in no_decay) ], 'weight_decay': 0.0 }] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer( optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule( warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) ################################# # prepare eval data for train # ################################# if args.do_train: eval_examples = processor.get_dev_examples(args.data_dir) eval_features = convert_examples_to_features(eval_examples, label_list, args.max_seq_length, tokenizer, output_mode) logger.info("***** Evaluation *****") logger.info(" Num evaluation examples = %d", len(eval_examples)) logger.info(" Batch size = %d", args.eval_batch_size) eval_all_input_ids = torch.tensor([f.input_ids for f in eval_features], dtype=torch.long) eval_all_input_mask = torch.tensor( [f.input_mask for f in eval_features], dtype=torch.long) eval_all_segment_ids = torch.tensor( [f.segment_ids for f in eval_features], dtype=torch.long) if output_mode == "classification": eval_all_label_ids = torch.tensor( [f.label_id for f in eval_features], dtype=torch.long) eval_data = TensorDataset(eval_all_input_ids, eval_all_input_mask, eval_all_segment_ids, eval_all_label_ids) # Run prediction for full data eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size) ######### # train # ######### # tensorboard tb_log_path = os.path.join('./tblog/', args.output_dir.split('/')[-1]) if not os.path.exists(tb_log_path): os.mkdir(tb_log_path) tensorboard_writer = SummaryWriter(tb_log_path) global_step = 0 nb_tr_steps = 0 tr_loss = 0 best_eval_result = 0 if args.do_train: train_features = convert_examples_to_features(train_examples, label_list, args.max_seq_length, tokenizer, output_mode) logger.info("***** Running training *****") logger.info(" Num examples = %d", len(train_examples)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) all_input_ids = torch.tensor([f.input_ids for f in train_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in train_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in train_features], dtype=torch.long) if output_mode == "classification": all_label_ids = torch.tensor([f.label_id for f in train_features], dtype=torch.long) train_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) for _ in trange(int(args.num_train_epochs), desc="Epoch"): tr_loss = 0 nb_tr_examples = 0 # nb_tr_steps = 0 for step, batch in enumerate( tqdm(train_dataloader, desc="Iteration")): model.train() batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, label_ids = batch # define a new function to compute loss values for both output_modes logits = model(input_ids, segment_ids, input_mask, labels=None) if output_mode == "classification": loss_fct = CrossEntropyLoss() loss = loss_fct(logits.view(-1, num_labels), label_ids.view(-1)) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * warmup_linear.get_lr( global_step, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 if nb_tr_steps % 100 == 99: tensorboard_writer.add_scalar('train_loss', loss.item(), nb_tr_steps) if nb_tr_steps % 1000 == 999: eval_result = evaluate(args, device, model, eval_all_label_ids, eval_dataloader) if eval_result['acc'] > best_eval_result: best_eval_result = eval_result['acc'] save_model_and_tokenizer(args, model, tokenizer) tensorboard_writer.add_scalar('eval_acc', eval_result['acc'], nb_tr_steps) tensorboard_writer.add_scalar('eval_loss', eval_result['eval_loss'], nb_tr_steps) ############## # save model # ############## if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0): save_model_and_tokenizer(args, model, tokenizer, best_path='') ############################ # load model for eval/test # ############################ model, tokenizer = load_model_and_tokenizer(args) model.to(device) ######## # eval # ######## if args.do_eval and (args.local_rank == -1 or torch.distributed.get_rank() == 0): # prepare evaluation data eval_examples = processor.get_dev_examples(args.data_dir) eval_features = convert_examples_to_features(eval_examples, label_list, args.max_seq_length, tokenizer, output_mode) logger.info("***** Evaluation *****") logger.info(" Num evaluation examples = %d", len(eval_examples)) logger.info(" Batch size = %d", args.eval_batch_size) eval_all_input_ids = torch.tensor([f.input_ids for f in eval_features], dtype=torch.long) eval_all_input_mask = torch.tensor( [f.input_mask for f in eval_features], dtype=torch.long) eval_all_segment_ids = torch.tensor( [f.segment_ids for f in eval_features], dtype=torch.long) if output_mode == "classification": eval_all_label_ids = torch.tensor( [f.label_id for f in eval_features], dtype=torch.long) eval_data = TensorDataset(eval_all_input_ids, eval_all_input_mask, eval_all_segment_ids, eval_all_label_ids) eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size) # eval evaluate(args, device, model, eval_all_label_ids, eval_dataloader, output_to_file=True) ######## # test # ######## if args.do_test and (args.local_rank == -1 or torch.distributed.get_rank() == 0): # prepare test data test_examples = processor.get_test_examples(args.data_dir) test_features = convert_examples_to_features(test_examples, label_list, args.max_seq_length, tokenizer, output_mode) logger.info("***** Running Test *****") logger.info(" Num examples = %d", len(test_examples)) logger.info(" Batch size = %d", args.eval_batch_size) test_all_input_ids = torch.tensor([f.input_ids for f in test_features], dtype=torch.long) test_all_input_mask = torch.tensor( [f.input_mask for f in test_features], dtype=torch.long) test_all_segment_ids = torch.tensor( [f.segment_ids for f in test_features], dtype=torch.long) if output_mode == "classification": test_all_label_ids = torch.tensor( [f.label_id for f in test_features], dtype=torch.long) test_data = TensorDataset(test_all_input_ids, test_all_input_mask, test_all_segment_ids, test_all_label_ids) test_sampler = SequentialSampler(test_data) test_dataloader = DataLoader(test_data, sampler=test_sampler, batch_size=args.eval_batch_size) # test test(args, device, model, test_dataloader)
def train(self, args, trn_features, eval_features=None, C_eval=None): # Prepare optimizer num_train_optimization_steps = int( len(trn_features) / args.train_batch_size / args.gradient_accumulation_steps) * args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) param_optimizer = list(self.model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [ p for n, p in param_optimizer if not any(nd in n for nd in no_decay) ], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule( warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) # Start Batch Training logger.info("***** Running training *****") logger.info(" Num examples = %d", len(trn_features)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) global_step = 0 nb_tr_steps = 0 tr_loss = 0 all_input_ids = torch.tensor([f.input_ids for f in trn_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in trn_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in trn_features], dtype=torch.long) all_output_ids = torch.tensor([f.output_ids for f in trn_features], dtype=torch.long) all_output_mask = torch.tensor([f.output_mask for f in trn_features], dtype=torch.long) train_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_output_ids, all_output_mask) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) self.model.train() total_run_time = 0.0 best_matcher_prec = -1 for epoch in range(1, args.num_train_epochs): tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 for step, batch in enumerate(train_dataloader): start_time = time.time() batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, output_ids, output_mask = batch c_pred = self.model(input_ids, segment_ids, input_mask) c_true = data_utils.repack_output(output_ids, output_mask, self.num_clusters, device) loss = self.criterion(c_pred, c_true) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 total_run_time += time.time() - start_time if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * warmup_linear.get_lr( global_step, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 # print training log if step % args.log_interval == 0 and step > 0: elapsed = time.time() - start_time cur_loss = tr_loss / nb_tr_steps logger.info( "| epoch {:3d} | {:4d}/{:4d} batches | ms/batch {:5.4f} | train_loss {:e}" .format(epoch, step, len(train_dataloader), elapsed * 1000 / args.log_interval, cur_loss)) # eval on dev set and save best model if step % args.eval_interval == 0 and step > 0 and args.stop_by_dev: eval_loss, eval_metrics, C_eval_pred = self.predict( args, eval_features, C_eval, topk=args.only_topk, verbose=False) logger.info('-' * 89) logger.info( '| epoch {:3d} evaluation | time: {:5.4f}s | eval_loss {:e}' .format(epoch, total_run_time, eval_loss)) logger.info('| matcher_eval_prec {}'.format(' '.join( "{:4.2f}".format(100 * v) for v in eval_metrics.prec))) logger.info('| matcher_eval_recl {}'.format(' '.join( "{:4.2f}".format(100 * v) for v in eval_metrics.recall))) avg_matcher_prec = np.mean(eval_metrics.prec) if avg_matcher_prec > best_matcher_prec and epoch > 0: logger.info( '| **** saving model at global_step {} ****'. format(global_step)) best_matcher_prec = avg_matcher_prec self.save(args) logger.info('-' * 89) self.model.train( ) # after model.eval(), reset model.train() return self
def main(finetuning_task='word_content'): parser = argparse.ArgumentParser() ## Required parameters parser.add_argument( "--data_dir", default=None, type=str, required=True, help= "The input data dir. Should contain the .csv files (or other data files) for the task." ) parser.add_argument( "--bert_model", default=None, type=str, required=True, help="Bert pre-trained model selected in the list: bert-base-uncased, " "bert-large-uncased, bert-base-cased, bert-large-cased, bert-base-multilingual-uncased, " "bert-base-multilingual-cased, bert-base-chinese.") parser.add_argument( "--output_dir", default=None, type=str, required=True, help="The output directory where the model checkpoints will be written." ) ## Other parameters parser.add_argument( "--max_seq_length", default=128, type=int, help= "The maximum total input sequence length after WordPiece tokenization. \n" "Sequences longer than this will be truncated, and sequences shorter \n" "than this will be padded.") parser.add_argument("--do_train", action='store_true', help="Whether to run training.") parser.add_argument("--do_eval", action='store_true', help="Whether to run eval on the dev set.") parser.add_argument( "--do_lower_case", action='store_true', help="Set this flag if you are using an uncased model.") parser.add_argument("--train_batch_size", default=32, type=int, help="Total batch size for training.") parser.add_argument("--eval_batch_size", default=8, type=int, help="Total batch size for eval.") parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.") parser.add_argument("--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform.") parser.add_argument( "--warmup_proportion", default=0.1, type=float, help= "Proportion of training to perform linear learning rate warmup for. " "E.g., 0.1 = 10%% of training.") parser.add_argument("--no_cuda", action='store_true', help="Whether not to use CUDA when available") parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus") parser.add_argument('--seed', type=int, default=42, help="random seed for initialization") parser.add_argument( '--gradient_accumulation_steps', type=int, default=1, help= "Number of updates steps to accumulate befolabel_numre performing a backward/update pass." ) parser.add_argument( '--fp16', action='store_true', help="Whether to use 16-bit float precision instead of 32-bit") parser.add_argument( '--loss_scale', type=float, default=0, help= "Loss scaling to improve fp16 numeric stability. Only used when fp16 set to True.\n" "0 (default value): dynamic loss scaling.\n" "Positive power of 2: static loss scaling value.\n") task_name = finetuning_task data_dir = '/home/xiongyi/dataxyz/SentEval/data/probing/' + task_name + '.txt' out_dir = './models/' + finetuning_task args = parser.parse_args(['--data_dir', data_dir,\ '--bert_model','bert-base-uncased','--output_dir',out_dir,'--do_train',\ '--local_rank', '-1', '--train_batch_size', '32', '--do_lower_case']) if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs # torch.distributed.init_process_group(backend='nccl') # logger.info("device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}".format( # device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_eval: raise ValueError( "At least one of `do_train` or `do_eval` must be True.") if os.path.exists(args.output_dir) and os.listdir(args.output_dir): raise ValueError( "Output directory ({}) already exists and is not empty.".format( args.output_dir)) if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case) # Prepare model #TODO: Num_labels hard coded! train_examples, num_labels = read_Probe_examples(args.data_dir) model = BertForSequenceClassification.from_pretrained( args.bert_model, num_labels=num_labels) if args.fp16: model.half() model.to(device) # if args.local_rank != -1: # try: # from apex.parallel import DistributedDataParallel as DDP # except ImportError: # raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training.") # # model = DDP(model) # elif n_gpu > 1: # model = torch.nn.DataParallel(model) if args.do_train: # Prepare data loader train_features = convert_examples_to_features(train_examples, tokenizer, args.max_seq_length) all_input_ids = torch.tensor([f.input_ids for f in train_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in train_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in train_features], dtype=torch.long) all_label = torch.tensor([f.label for f in train_features], dtype=torch.long) train_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label) if 1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) num_train_optimization_steps = len( train_dataloader ) // args.gradient_accumulation_steps * args.num_train_epochs # if args.local_rank != -1: # num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size() # Prepare optimizer param_optimizer = list(model.named_parameters()) # hack to remove pooler, which is not used # thus it produce None grad that break apex param_optimizer = [n for n in param_optimizer] no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [ p for n, p in param_optimizer if not any(nd in n for nd in no_decay) ], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule( warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 logger.info("***** Running training *****") logger.info(" Num examples = %d", len(train_examples)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) for epoch in trange(int(args.num_train_epochs), desc="Epoch"): ###test on all probing/downstream tasks # model.eval() # results = probe(model,tokenizer, device, args.max_seq_length, batcher, prepare, PATH_TO_SENTEVAL, PATH_TO_DATA,\ # ['MR', 'CR', 'MPQA','TREC', 'MRPC','SICKEntailment', 'SICKRelatedness', 'STSBenchmark', # 'Length', 'WordContent', 'Depth','BigramShift','OddManOut', 'CoordinationInversion']) # print ('results', results) # torch.cuda.empty_cache() model.train() tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 for step, batch in enumerate( tqdm(train_dataloader, desc="Iteration")): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, label_ids = batch #print (input_ids.shape , input_mask.shape, segment_ids.shape, label_ids.shape) loss = model(input_ids, segment_ids, input_mask, label_ids) print('loss', loss) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.fp16 and args.loss_scale != 1.0: # rescale loss for fp16 training # see https://docs.nvidia.com/deeplearning/sdk/mixed-precision-training/index.html loss = loss * args.loss_scale if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 if args.fp16: optimizer.backward(loss) else: loss.backward() if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * warmup_linear.get_lr( global_step, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 ####save model after each epoch model_to_save = model.module if hasattr( model, 'module') else model # Only save the model it-self # If we save using the predefined names, we can load using `from_pretrained` output_model_file = os.path.join( args.output_dir, WEIGHTS_NAME + finetuning_task + '_epoch_' + str(epoch)) output_config_file = os.path.join( args.output_dir, CONFIG_NAME + finetuning_task + '_epoch_' + str(epoch)) torch.save(model_to_save.state_dict(), output_model_file) model_to_save.config.to_json_file(output_config_file) if args.do_train: # # Save a trained model, configuration and tokenizer # model_to_save = model.module if hasattr(model, 'module') else model # Only save the model it-self # # # If we save using the predefined names, we can load using `from_pretrained` # output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME) # output_config_file = os.path.join(args.output_dir, CONFIG_NAME) # # torch.save(model_to_save.state_dict(), output_model_file) # model_to_save.config.to_json_file(output_config_file) tokenizer.save_vocabulary(args.output_dir)
def main(dn, dev, batch_size, epochs): pregenerated_data = Dir(f'data/{dn}.pretrain.temp') output_dir = Dir(f'temp/{dn}.bert.pt') bert_model = 'bert-base-uncased' do_lower_case = TRUE reduce_memory = TRUE epochs = epochs local_rank = -1 no_cuda = (dev == 'cpu') gradient_accumulation_steps = 1 train_batch_size = batch_size fp16 = FALSE loss_scale = 0 warmup_proportion = 0.1 learning_rate = 3e-5 seed = 42 samples_per_epoch = [] for i in range(epochs): epoch_file = pregenerated_data / f'epoch_{i}.json' metrics_file = pregenerated_data / f'epoch_{i}_metrics.json' if epoch_file.isFile() and metrics_file.isFile(): metrics = json.loads(metrics_file.file().read()) samples_per_epoch.append(metrics['num_training_examples']) else: if i == 0: exit("No training data was found!") print( f"Warning! There are fewer epochs of pregenerated data ({i}) than training epochs ({epochs})." ) print( "This script will loop over the available data, but training diversity may be negatively impacted." ) num_data_epochs = i break else: num_data_epochs = epochs if no_cuda: device, n_gpu = 'cpu', 0 elif local_rank == -1: device, n_gpu = 'cuda', torch.cuda.device_count() else: torch.cuda.set_device(local_rank) device, n_gpu = f'cuda:{local_rank}', 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') pr(device=device, n_gpu=n_gpu, distributed=(local_rank != -1), float16=fp16) train_batch_size = train_batch_size // gradient_accumulation_steps random.seed(seed) np.random.seed(seed) torch.manual_seed(seed) if n_gpu > 0: torch.cuda.manual_seed_all(seed) tokenizer = BertTokenizer.from_pretrained(bert_model, do_lower_case=do_lower_case) total_train_examples = 0 for i in range(epochs): # The modulo takes into account the fact that we may loop over limited epochs of data total_train_examples += samples_per_epoch[i % len(samples_per_epoch)] num_train_optimization_steps = int( total_train_examples / train_batch_size / gradient_accumulation_steps) if local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) # Prepare model model = BertForPreTraining.from_pretrained(bert_model) if fp16: model.half() model.to(device) if local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: model = nn.DataParallel(model) # Prepare optimizer param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] warmup_linear = NA if fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=learning_rate, bias_correction=False, max_grad_norm=1.0) if loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=loss_scale) warmup_linear = WarmupLinearSchedule( warmup=warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=learning_rate, warmup=warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 pr('***** Running training *****') pr(num_examples=total_train_examples) pr(batch_size=train_batch_size) pr(num_steps=num_train_optimization_steps) model.train() for epoch in range(epochs): epoch_dataset = PregeneratedDataset( epoch=epoch, training_path=pregenerated_data, tokenizer=tokenizer, num_data_epochs=num_data_epochs, reduce_memory=reduce_memory, ) if local_rank == -1: train_sampler = RandomSampler(epoch_dataset) else: train_sampler = DistributedSampler(epoch_dataset) train_dataloader = DataLoader(epoch_dataset, sampler=train_sampler, batch_size=train_batch_size) tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 with tqdm(total=len(train_dataloader), desc=f"epoch-{epoch}") as pbar: for step, batch in enumerate(train_dataloader): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, lm_label_ids, is_next = batch loss = model(input_ids, segment_ids, input_mask, lm_label_ids, is_next) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if gradient_accumulation_steps > 1: loss = loss / gradient_accumulation_steps if fp16: optimizer.backward(loss) else: loss.backward() tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 pbar.update(1) mean_loss = tr_loss * gradient_accumulation_steps / nb_tr_steps pbar.set_postfix_str(f"Loss: {mean_loss:.5f}") if (step + 1) % gradient_accumulation_steps == 0: if fp16: # modify learning rate with special warm up BERT uses # if fp16 is False, BertAdam is used that handles this automatically lr_this_step = learning_rate * warmup_linear.get_lr( global_step / num_train_optimization_steps, warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 # Save a trained model pr('***** Saving fine-tuned model *****') model_to_save = model.module if hasattr( model, 'module') else model # Only save the model it-self output_model_file = output_dir.add().div('pytorch_model.bin').file() torch.save(model_to_save.state_dict(), output_model_file.pathstr())
def main(): parser = argparse.ArgumentParser() ## Required parameters parser.add_argument( "--data_dir", default=None, type=str, required=True, help= "The input data dir. Should contain the .tsv files (or other data files) for the task." ) parser.add_argument( "--bert_model", default=None, type=str, required=True, help="Bert pre-trained model selected in the list: bert-base-uncased, " "bert-large-uncased, bert-base-cased, bert-large-cased, bert-base-multilingual-uncased, " "bert-base-multilingual-cased, bert-base-chinese.") parser.add_argument("--task_name", default=None, type=str, required=True, help="The name of the task to train.") parser.add_argument( "--output_dir", default=None, type=str, required=True, help= "The output directory where the model predictions and checkpoints will be written." ) ## Other parameters parser.add_argument("--bert_original", action='store_true', help="To run for original BERT") parser.add_argument( "--cache_dir", default="", type=str, help= "Where do you want to store the pre-trained models downloaded from s3") parser.add_argument( "--max_seq_length", default=128, type=int, help= "The maximum total input sequence length after WordPiece tokenization. \n" "Sequences longer than this will be truncated, and sequences shorter \n" "than this will be padded.") parser.add_argument("--do_train", action='store_true', help="Whether to run training.") parser.add_argument("--do_eval", action='store_true', help="Whether to run eval on the dev set.") parser.add_argument("--train_batch_size", default=32, type=int, help="Total batch size for training.") parser.add_argument("--eval_batch_size", default=8, type=int, help="Total batch size for eval.") parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.") parser.add_argument("--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform.") parser.add_argument( "--warmup_proportion", default=0.1, type=float, help= "Proportion of training to perform linear learning rate warmup for. " "E.g., 0.1 = 10%% of training.") parser.add_argument("--no_cuda", action='store_true', help="Whether not to use CUDA when available") parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus") parser.add_argument('--seed', type=int, default=42, help="random seed for initialization") parser.add_argument( '--gradient_accumulation_steps', type=int, default=1, help= "Number of updates steps to accumulate before performing a backward/update pass." ) parser.add_argument( '--fp16', action='store_true', help="Whether to use 16-bit float precision instead of 32-bit") parser.add_argument( '--loss_scale', type=float, default=0, help= "Loss scaling to improve fp16 numeric stability. Only used when fp16 set to True.\n" "0 (default value): dynamic loss scaling.\n" "Positive power of 2: static loss scaling value.\n") args = parser.parse_args() processors = { "nsp": NSPProcessor, } num_labels_task = { "nsp": 2, } if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logger.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_eval: raise ValueError( "At least one of `do_train` or `do_eval` must be True.") if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) task_name = args.task_name.lower() processor = processors[task_name]() num_labels = num_labels_task[task_name] label_list = processor.get_labels() tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=True) train_examples = None num_train_optimization_steps = None if args.do_train: train_examples = processor.get_train_examples(args.data_dir) num_train_optimization_steps = int( len(train_examples) / args.train_batch_size / args.gradient_accumulation_steps) * args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) cache_dir = args.cache_dir if args.cache_dir else os.path.join( PYTORCH_PRETRAINED_BERT_CACHE, 'distributed_{}'.format( args.local_rank)) model = BertForSequenceClassification.from_pretrained( args.bert_model, cache_dir=cache_dir, num_labels=num_labels) print('BERT original model loaded') if args.fp16: model.half() model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) # Prepare optimizer param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 nb_tr_steps = 0 tr_loss = 0 if args.do_train: train_features = convert_examples_to_features(train_examples, label_list, args.max_seq_length, tokenizer) logger.info("***** Running training *****") logger.info(" Num examples = %d", len(train_examples)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) all_input_ids = torch.tensor([f.input_ids for f in train_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in train_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in train_features], dtype=torch.long) all_label_ids = torch.tensor([f.label_id for f in train_features], dtype=torch.long) train_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) model.train() for _ in trange(int(args.num_train_epochs), desc="Epoch"): tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 for step, batch in enumerate( tqdm(train_dataloader, desc="Iteration")): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, label_ids = batch loss = model(input_ids, segment_ids, input_mask, label_ids) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * WarmupLinearSchedule( global_step / num_train_optimization_steps, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 # save model torch.save(model.state_dict(), os.path.join(args.output_dir, 'nsp_model.pt')) if args.do_eval and (args.local_rank == -1 or torch.distributed.get_rank() == 0): eval_examples = processor.get_dev_examples(args.data_dir) eval_features = convert_examples_to_features(eval_examples, label_list, args.max_seq_length, tokenizer) logger.info("***** Running evaluation *****") logger.info(" Num examples = %d", len(eval_examples)) logger.info(" Batch size = %d", args.eval_batch_size) all_input_ids = torch.tensor([f.input_ids for f in eval_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in eval_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in eval_features], dtype=torch.long) all_label_ids = torch.tensor([f.label_id for f in eval_features], dtype=torch.long) eval_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) # Run prediction for full data eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size) model.eval() eval_loss, eval_accuracy = 0, 0 nb_eval_steps, nb_eval_examples = 0, 0 for input_ids, input_mask, segment_ids, label_ids in tqdm( eval_dataloader, desc="Evaluating"): input_ids = input_ids.to(device) input_mask = input_mask.to(device) segment_ids = segment_ids.to(device) label_ids = label_ids.to(device) with torch.no_grad(): tmp_eval_loss = model(input_ids, segment_ids, input_mask, label_ids) logits = model(input_ids, segment_ids, input_mask) logits = logits.detach().cpu().numpy() label_ids = label_ids.to('cpu').numpy() tmp_eval_accuracy = accuracy(logits, label_ids) eval_loss += tmp_eval_loss.mean().item() eval_accuracy += tmp_eval_accuracy nb_eval_examples += input_ids.size(0) nb_eval_steps += 1 eval_loss = eval_loss / nb_eval_steps eval_accuracy = eval_accuracy / nb_eval_examples loss = tr_loss / nb_tr_steps if args.do_train else None result = { 'eval_loss': eval_loss, 'eval_accuracy': eval_accuracy, 'global_step': global_step, 'loss': loss } output_eval_file = os.path.join(args.output_dir, "eval_results.txt") with open(output_eval_file, "w") as writer: logger.info("***** Eval results *****") for key in sorted(result.keys()): logger.info(" %s = %s", key, str(result[key])) writer.write("%s = %s\n" % (key, str(result[key])))
def train_label (self, train_dataloader, num_train_optimization_steps, dev_dataloader=None): ## update BERT based on how input-label are matched ## BERT.emb is used by words in documents param_optimizer = list(self.bert_lm_sentence.bert.named_parameters()) # + list (self.metric_module.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] # if self.args.average_layer: optimizer_grouped_parameters = [ {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)] , 'weight_decay': 0.01}, {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)] + [p for n, p in list(self.metric_module.named_parameters())], 'weight_decay': 0.0} ] # else: # optimizer_grouped_parameters = [ # {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)] , 'weight_decay': 0.01}, # {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)] + [p for n, p in list(self.metric_module.named_parameters())] , 'weight_decay': 0.0} # ] if self.args.average_layer: optimizer_weight = optim.Adam([self.A1], lr=self.args.lr_weight) if self.args.fp16: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam optimizer = FusedAdam(optimizer_grouped_parameters, lr=self.args.learning_rate, bias_correction=False, max_grad_norm=1.0) if self.args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=self.args.loss_scale) warmup_linear = WarmupLinearSchedule(warmup=self.args.warmup_proportion, t_total=num_train_optimization_steps) else: # does not work with --fp16, runs fine with BertAdam optimizer = BertAdam(optimizer_grouped_parameters, lr=self.args.learning_rate, warmup=self.args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 eval_acc = 0 last_best_epoch = 0 for epoch in range( int(self.args.num_train_epochs_entailment)) : self.train() ## turn on train again tr_loss = 0 for step, batch in enumerate(tqdm(train_dataloader, desc="ent. epoch {}".format(epoch))): if self.args.use_cuda: batch = tuple(t.cuda() for t in batch) else: batch = tuple(t for t in batch) label_desc1, label_len1, label_mask1, label_desc2, label_len2, label_mask2, label_ids = batch label_desc1.data = label_desc1.data[ : , 0:int(max(label_len1)) ] # trim down input to max len of the batch label_mask1.data = label_mask1.data[ : , 0:int(max(label_len1)) ] # trim down input to max len of the batch label_emb1 = self.encode_label_desc(label_desc1,label_len1,label_mask1.type(torch.FloatTensor).cuda()) label_desc2.data = label_desc2.data[ : , 0:int(max(label_len2)) ] label_mask2.data = label_mask2.data[ : , 0:int(max(label_len2)) ] label_emb2 = self.encode_label_desc(label_desc2,label_len2,label_mask2.type(torch.FloatTensor).cuda()) loss, score = self.metric_module.forward(label_emb1, label_emb2, true_label=label_ids) if self.args.gradient_accumulation_steps > 1: loss = loss / self.args.gradient_accumulation_steps if self.args.fp16: optimizer.backward(loss) else: loss.backward() tr_loss = tr_loss + loss if (step + 1) % self.args.gradient_accumulation_steps == 0: if self.args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = self.args.learning_rate * warmup_linear.get_lr(global_step, self.args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 if self.args.average_layer: ## must bound weights after calling @optimizer.step optimizer_weight.step() optimizer_weight.zero_grad() self.A1.data[self.A1.data < 0] = 0.000001 ## exact 0 may not give any derivative self.A1.data[self.A1.data > 1] = 0.999999 if self.args.average_layer: print ('\nsee 1st few weight\n') print (self.A1[0:100]) print ('\n\n') print ("\ntrain inner epoch {} loss {}".format(epoch,tr_loss)) # eval at each epoch # print ('\neval on train data inner epoch {}'.format(epoch)) ## too slow, takes 5 mins, we should just skip # result, preds = self.eval_label(train_dataloader) print ('\neval on dev data inner epoch {}'.format(epoch)) result, preds = self.eval_label(dev_dataloader) if eval_acc < result["acc"]: eval_acc = result["acc"] ## better acc print ("save best") torch.save(self.state_dict(), os.path.join(self.args.result_folder,"best_state_dict.pytorch")) last_best_epoch = epoch if epoch - last_best_epoch > 3: print ('\n\n\n**** break early \n\n\n') return tr_loss return tr_loss # last train loss
def update_bert (self,num_data_epochs,num_train_optimization_steps): ## **** SHOULD NOT DO THIS OFTEN TO AVOID SLOW RUN TIME **** ## WITH CURRENT APEX CODE, WE WILL SEE ERROR FOR THE PARAMS NOT USED, ADDED A FIX, SO FOR NOW, WE CAN USE FP16 ## https://github.com/NVIDIA/apex/issues/131 param_optimizer = list(self.bert_lm_sentence.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [ {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01}, {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0} ] if self.args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training.") optimizer = FusedAdam(optimizer_grouped_parameters, lr=self.args.learning_rate, bias_correction=False, max_grad_norm=1.0) if self.args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=self.args.loss_scale) warmup_linear = WarmupLinearSchedule(warmup=self.args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=self.args.learning_rate, warmup=self.args.warmup_proportion, t_total=num_train_optimization_steps) self.bert_lm_sentence.train() global_step = 0 for epoch in range( int(self.args.num_train_epochs_bert) ) : ## call the pregenerated dataset epoch_dataset = PregeneratedDataset(epoch=epoch, training_path=self.args.pregenerated_data, tokenizer=self.tokenizer, num_data_epochs=num_data_epochs, reduce_memory=self.args.reduce_memory) train_sampler = RandomSampler(epoch_dataset) train_dataloader = DataLoader(epoch_dataset, sampler=train_sampler, batch_size=self.args.batch_size_pretrain_bert) ## now do training tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 for step, batch in enumerate(tqdm(train_dataloader, desc="bert epoch {}".format(epoch))): if self.args.use_cuda: batch = tuple(t.cuda() for t in batch) else: batch = tuple(t for t in batch) input_ids, input_mask, segment_ids, lm_label_ids, is_next = batch # https://github.com/huggingface/pytorch-pretrained-BERT/blob/master/examples/lm_finetuning/finetune_on_pregenerated.py#L298 loss = self.bert_lm_sentence(input_ids, token_type_ids=segment_ids, attention_mask=input_mask, masked_lm_labels=lm_label_ids, next_sentence_label=is_next) if self.args.gradient_accumulation_steps > 1: loss = loss / self.args.gradient_accumulation_steps if self.args.fp16: optimizer.backward(loss) else: loss.backward() tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 mean_loss = tr_loss * self.args.gradient_accumulation_steps / nb_tr_steps if (step + 1) % self.args.gradient_accumulation_steps == 0: if self.args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = self.args.learning_rate * warmup_linear.get_lr(global_step, self.args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 return mean_loss
def main(): parser = argparse.ArgumentParser() # Required parameters parser.add_argument( "--bert_model", default=None, type=str, required=True, help="Bert pre-trained model selected in the list: bert-base-uncased, " "bert-large-uncased, bert-base-cased, bert-base-multilingual, bert-base-chinese." ) parser.add_argument("--vocab_file", default='bert-base-uncased-vocab.txt', type=str, required=True) parser.add_argument("--model_file", default='bert-base-uncased.tar.gz', type=str, required=True) parser.add_argument( "--output_dir", default=None, type=str, required=True, help= "The output directory where the model checkpoints and predictions will be written." ) parser.add_argument( "--predict_dir", default=None, type=str, required=True, help="The output directory where the predictions will be written.") # Other parameters parser.add_argument("--train_file", default=None, type=str, help="SQuAD json for training. E.g., train-v1.1.json") parser.add_argument( "--predict_file", default=None, type=str, help="SQuAD json for predictions. E.g., dev-v1.1.json or test-v1.1.json" ) parser.add_argument("--test_file", default=None, type=str) parser.add_argument( "--max_seq_length", default=384, type=int, help= "The maximum total input sequence length after WordPiece tokenization. Sequences " "longer than this will be truncated, and sequences shorter than this will be padded." ) parser.add_argument( "--doc_stride", default=128, type=int, help= "When splitting up a long document into chunks, how much stride to take between chunks." ) parser.add_argument( "--max_query_length", default=64, type=int, help= "The maximum number of tokens for the question. Questions longer than this will " "be truncated to this length.") parser.add_argument("--do_train", default=False, action='store_true', help="Whether to run training.") parser.add_argument("--do_predict", default=False, action='store_true', help="Whether to run eval on the dev set.") parser.add_argument("--train_batch_size", default=32, type=int, help="Total batch size for training.") parser.add_argument("--predict_batch_size", default=8, type=int, help="Total batch size for predictions.") parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.") parser.add_argument("--num_train_epochs", default=2.0, type=float, help="Total number of training epochs to perform.") parser.add_argument( "--warmup_proportion", default=0.1, type=float, help= "Proportion of training to perform linear learning rate warmup for. E.g., 0.1 = 10% " "of training.") parser.add_argument( "--n_best_size", default=20, type=int, help= "The total number of n-best predictions to generate in the nbest_predictions.json " "output file.") parser.add_argument( "--max_answer_length", default=30, type=int, help= "The maximum length of an answer that can be generated. This is needed because the start " "and end predictions are not conditioned on one another.") parser.add_argument( "--verbose_logging", default=False, action='store_true', help= "If true, all of the warnings related to data processing will be printed. " "A number of warnings are expected for a normal SQuAD evaluation.") parser.add_argument("--no_cuda", default=False, action='store_true', help="Whether not to use CUDA when available") parser.add_argument('--seed', type=int, default=42, help="random seed for initialization") parser.add_argument('--view_id', type=int, default=1, help="view id of multi-view co-training(two-view)") parser.add_argument( '--gradient_accumulation_steps', type=int, default=1, help= "Number of updates steps to accumulate before performing a backward/update pass." ) parser.add_argument( "--do_lower_case", default=True, action='store_true', help= "Whether to lower case the input text. True for uncased models, False for cased models." ) parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus") parser.add_argument( '--fp16', default=False, action='store_true', help="Whether to use 16-bit float precision instead of 32-bit") parser.add_argument( '--loss_scale', type=float, default=0, help= "Loss scaling to improve fp16 numeric stability. Only used when fp16 set to True.\n" "0 (default value): dynamic loss scaling.\n" "Positive power of 2: static loss scaling value.\n") parser.add_argument('--save_all', default=False, action='store_true') # Base setting parser.add_argument('--pretrain', type=str, default=None) parser.add_argument('--max_ctx', type=int, default=2) parser.add_argument('--task_name', type=str, default='race') parser.add_argument('--bert_name', type=str, default='pool-race') parser.add_argument('--reader_name', type=str, default='race') parser.add_argument('--per_eval_step', type=int, default=10000000) # model parameters parser.add_argument('--evidence_lambda', type=float, default=0.8) # Parameters for running labeling model parser.add_argument('--do_label', default=False, action='store_true') parser.add_argument('--sentence_id_file', nargs='*') parser.add_argument('--weight_threshold', type=float, default=0.0) parser.add_argument('--only_correct', default=False, action='store_true') parser.add_argument('--label_threshold', type=float, default=0.0) parser.add_argument('--multi_evidence', default=False, action='store_true') parser.add_argument('--metric', default='accuracy', type=str) parser.add_argument('--num_evidence', default=1, type=int) parser.add_argument('--power_length', default=1., type=float) parser.add_argument('--num_choices', default=4, type=int) parser.add_argument('--split_type', default=0, type=int) parser.add_argument('--use_gumbel', default=False, action='store_true') parser.add_argument('--sample_steps', type=int, default=10) parser.add_argument('--reward_func', type=int, default=0) parser.add_argument('--freeze_bert', default=False, action='store_true') args = parser.parse_args() logger = setting_logger(args.output_dir) logger.info('================== Program start. ========================') logger.info( f'================== Running with seed {args.seed} ==========================' ) model_params = prepare_model_params(args) read_params = prepare_read_params(args) if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logger.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(args.gradient_accumulation_steps)) args.train_batch_size = int(args.train_batch_size / args.gradient_accumulation_steps) random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_predict and not args.do_label: raise ValueError( "At least one of `do_train` or `do_predict` or `do_label` must be True." ) if args.do_train: if not args.train_file: raise ValueError( "If `do_train` is True, then `train_file` must be specified.") if args.do_predict: if not args.predict_file: raise ValueError( "If `do_predict` is True, then `predict_file` must be specified." ) if args.do_train: if os.path.exists(args.output_dir) and os.listdir(args.output_dir): raise ValueError( "Output directory () already exists and is not empty.") os.makedirs(args.output_dir, exist_ok=True) if args.do_predict or args.do_label: os.makedirs(args.predict_dir, exist_ok=True) tokenizer = BertTokenizer.from_pretrained(args.vocab_file) data_reader = initialize_reader(args.reader_name) num_train_steps = None if args.do_train or args.do_label: train_examples = data_reader.read(input_file=args.train_file, **read_params) cached_train_features_file = args.train_file + '_{0}_{1}_{2}_{3}_{4}_{5}'.format( args.bert_model, str(args.max_seq_length), str(args.doc_stride), str(args.max_query_length), str(args.max_ctx), str(args.task_name)) try: with open(cached_train_features_file, "rb") as reader: train_features = pickle.load(reader) except FileNotFoundError: train_features = data_reader.convert_examples_to_features( examples=train_examples, tokenizer=tokenizer, max_seq_length=args.max_seq_length) if args.local_rank == -1 or torch.distributed.get_rank() == 0: logger.info(" Saving train features into cached file %s", cached_train_features_file) with open(cached_train_features_file, "wb") as writer: pickle.dump(train_features, writer) num_train_steps = int( len(train_features) / args.train_batch_size / args.gradient_accumulation_steps * args.num_train_epochs) # Prepare model if args.pretrain is not None: logger.info('Load pretrained model from {}'.format(args.pretrain)) model_state_dict = torch.load(args.pretrain, map_location='cuda:0') model = initialize_model(args.bert_name, args.model_file, state_dict=model_state_dict, **model_params) else: model = initialize_model(args.bert_name, args.model_file, **model_params) if args.fp16: model.half() model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) # Prepare optimizer param_optimizer = list(model.named_parameters()) # Remove frozen parameters param_optimizer = [n for n in param_optimizer if n[1].requires_grad] # hack to remove pooler, which is not used # thus it produce None grad that break apex param_optimizer = [n for n in param_optimizer if 'pooler' not in n[0]] no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] t_total = num_train_steps if num_train_steps is not None else -1 if args.local_rank != -1: t_total = t_total // torch.distributed.get_world_size() if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule(warmup=args.warmup_proportion, t_total=t_total) logger.info( f"warm up linear: warmup = {warmup_linear.warmup}, t_total = {warmup_linear.t_total}." ) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=t_total) # Prepare data eval_examples = data_reader.read(input_file=args.predict_file, **read_params) eval_features = data_reader.convert_examples_to_features( examples=eval_examples, tokenizer=tokenizer, max_seq_length=args.max_seq_length) eval_tensors = data_reader.data_to_tensors(eval_features) eval_data = TensorDataset(*eval_tensors) eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.predict_batch_size) if args.do_train: if args.do_label: logger.info('Training in State Wise.') sentence_label_file = args.sentence_id_file if sentence_label_file is not None: for file in sentence_label_file: train_features = data_reader.generate_features_sentence_ids( train_features, file) else: logger.info('No sentence id supervision is found.') else: logger.info('Training in traditional way.') logger.info("***** Running training *****") logger.info(" Num orig examples = %d", len(train_examples)) logger.info(" Num split examples = %d", len(train_features)) logger.info(" Num train total optimization steps = %d", t_total) logger.info(" Batch size = %d", args.predict_batch_size) train_loss = AverageMeter() best_acc = 0.0 best_loss = 1000000 summary_writer = SummaryWriter(log_dir=args.output_dir) global_step = 0 eval_loss = AverageMeter() eval_accuracy = CategoricalAccuracy() eval_epoch = 0 train_tensors = data_reader.data_to_tensors(train_features) train_data = TensorDataset(*train_tensors) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) for epoch in range(int(args.num_train_epochs)): logger.info(f'Running at Epoch {epoch}') # Train for step, batch in enumerate( tqdm(train_dataloader, desc="Iteration", dynamic_ncols=True)): model.train() if n_gpu == 1: batch = batch_to_device( batch, device) # multi-gpu does scattering it-self inputs = data_reader.generate_inputs( batch, train_features, model_state=ModelState.Train) model_output = model(**inputs) loss = model_output['loss'] if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() if (step + 1) % args.gradient_accumulation_steps == 0: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used and handles this automatically if args.fp16: lr_this_step = args.learning_rate * warmup_linear.get_lr( global_step) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step summary_writer.add_scalar('lr', lr_this_step, global_step) else: summary_writer.add_scalar('lr', optimizer.get_lr()[0], global_step) optimizer.step() optimizer.zero_grad() global_step += 1 train_loss.update(loss.item(), 1) summary_writer.add_scalar('train_loss', train_loss.avg, global_step) # logger.info(f'Train loss: {train_loss.avg}') if (step + 1) % args.per_eval_step == 0 or step == len( train_dataloader) - 1: # Evaluation model.eval() logger.info("Start evaluating") for _, eval_batch in enumerate( tqdm(eval_dataloader, desc="Evaluating", dynamic_ncols=True)): if n_gpu == 1: eval_batch = batch_to_device( eval_batch, device) # multi-gpu does scattering it-self inputs = data_reader.generate_inputs( eval_batch, eval_features, model_state=ModelState.Evaluate) with torch.no_grad(): output_dict = model(**inputs) loss, choice_logits = output_dict[ 'loss'], output_dict['choice_logits'] eval_loss.update(loss.item(), 1) eval_accuracy(choice_logits, inputs["labels"]) eval_epoch_loss = eval_loss.avg summary_writer.add_scalar('eval_loss', eval_epoch_loss, eval_epoch) eval_loss.reset() current_acc = eval_accuracy.get_metric(reset=True) summary_writer.add_scalar('eval_acc', current_acc, eval_epoch) torch.cuda.empty_cache() if args.save_all: model_to_save = model.module if hasattr( model, 'module') else model # Only save the model it-self output_model_file = os.path.join( args.output_dir, f"pytorch_model_{eval_epoch}.bin") torch.save(model_to_save.state_dict(), output_model_file) if current_acc > best_acc: best_acc = current_acc model_to_save = model.module if hasattr( model, 'module') else model # Only save the model it-self output_model_file = os.path.join( args.output_dir, "pytorch_model.bin") torch.save(model_to_save.state_dict(), output_model_file) if eval_epoch_loss < best_loss: best_loss = eval_epoch_loss model_to_save = model.module if hasattr( model, 'module') else model # Only save the model it-self output_model_file = os.path.join( args.output_dir, "pytorch_loss_model.bin") torch.save(model_to_save.state_dict(), output_model_file) logger.info( 'Eval Epoch: %d, Accuracy: %.4f (Best Accuracy: %.4f)' % (eval_epoch, current_acc, best_acc)) eval_epoch += 1 logger.info( f'Epoch {epoch}: Accuracy: {best_acc}, Train Loss: {train_loss.avg}' ) summary_writer.close() for output_model_name in ["pytorch_model.bin", "pytorch_loss_model.bin"]: # Loading trained model output_model_file = os.path.join(args.output_dir, output_model_name) model_state_dict = torch.load(output_model_file, map_location='cuda:0') model = initialize_model(args.bert_name, args.model_file, state_dict=model_state_dict, **model_params) model.to(device) # Write Yes/No predictions if args.do_predict and (args.local_rank == -1 or torch.distributed.get_rank() == 0): test_examples = data_reader.read(args.test_file) test_features = data_reader.convert_examples_to_features( test_examples, tokenizer, args.max_seq_length) test_tensors = data_reader.data_to_tensors(test_features) test_data = TensorDataset(*test_tensors) test_sampler = SequentialSampler(test_data) test_dataloader = DataLoader(test_data, sampler=test_sampler, batch_size=args.predict_batch_size) logger.info("***** Running predictions *****") logger.info(" Num orig examples = %d", len(test_examples)) logger.info(" Num split examples = %d", len(test_features)) logger.info(" Batch size = %d", args.predict_batch_size) model.eval() all_results = [] test_acc = CategoricalAccuracy() logger.info("Start predicting yes/no on Dev set.") for batch in tqdm(test_dataloader, desc="Testing"): if n_gpu == 1: batch = batch_to_device( batch, device) # multi-gpu does scattering it-self inputs = data_reader.generate_inputs( batch, test_features, model_state=ModelState.Evaluate) with torch.no_grad(): batch_choice_logits = model(**inputs)['choice_logits'] test_acc(batch_choice_logits, inputs['labels']) example_indices = batch[-1] for i, example_index in enumerate(example_indices): choice_logits = batch_choice_logits[i].detach().cpu( ).tolist() test_feature = test_features[example_index.item()] unique_id = int(test_feature.unique_id) all_results.append( RawResultChoice(unique_id=unique_id, choice_logits=choice_logits)) if "loss" in output_model_name: logger.info( 'Predicting question choice on test set using model with lowest loss on validation set.' ) output_prediction_file = os.path.join(args.predict_dir, 'loss_predictions.json') else: logger.info( 'Predicting question choice on test set using model with best accuracy on validation set,' ) output_prediction_file = os.path.join(args.predict_dir, 'predictions.json') data_reader.write_predictions(test_examples, test_features, all_results, output_prediction_file) logger.info( f"Accuracy on Test set: {test_acc.get_metric(reset=True)}") # Loading trained model. if args.metric == 'accuracy': logger.info("Load model with best accuracy on validation set.") output_model_file = os.path.join(args.output_dir, "pytorch_model.bin") elif args.metric == 'loss': logger.info("Load model with lowest loss on validation set.") output_model_file = os.path.join(args.output_dir, "pytorch_loss_model.bin") else: raise RuntimeError( f"Wrong metric type for {args.metric}, which must be in ['accuracy', 'loss']." ) model_state_dict = torch.load(output_model_file, map_location='cuda:0') model = initialize_model(args.bert_name, args.model_file, state_dict=model_state_dict, **model_params) model.to(device) # Labeling sentence id. if args.do_label and (args.local_rank == -1 or torch.distributed.get_rank() == 0): f = open('debug_log.txt', 'w') def softmax(x): """Compute softmax values for each sets of scores in x.""" e_x = np.exp(x - np.max(x)) return e_x / e_x.sum() def topk(sentence_sim): """ :param sentence_sim: numpy :return: """ max_length = min(args.num_evidence, len(sentence_sim)) sorted_scores = np.array(sorted(sentence_sim, reverse=True)) scores = [] for idx in range(max_length): scores.append(np.log(softmax(sorted_scores[idx:])[0])) scores = [np.mean(scores[:(j + 1)]) for j in range(max_length)] top_k = int(np.argmax(scores) + 1) sorted_scores = sorted(enumerate(sentence_sim), key=lambda x: x[1], reverse=True) evidence_ids = [x[0] for x in sorted_scores[:top_k]] sentence = { 'sentences': evidence_ids, 'value': float(np.exp(scores[top_k - 1])) } return sentence def batch_topk(sentence_sim, sentence_mask): batch_size = sentence_sim.size(0) num_choices = sentence_sim.size(1) sentence_sim = sentence_sim.numpy() + 1e-15 sentence_mask = sentence_mask.numpy() sentence_ids = [] for b in range(batch_size): choice_sentence_ids = [ topk(_sim[:int(sum(_mask))]) for _sim, _mask in zip(sentence_sim[b], sentence_mask[b]) ] assert len(choice_sentence_ids) == num_choices sentence_ids.append(choice_sentence_ids) return sentence_ids test_examples = train_examples test_features = train_features test_tensors = data_reader.data_to_tensors(test_features) test_data = TensorDataset(*test_tensors) test_sampler = SequentialSampler(test_data) test_dataloader = DataLoader(test_data, sampler=test_sampler, batch_size=args.predict_batch_size) logger.info("***** Running labeling *****") logger.info(" Num orig examples = %d", len(test_examples)) logger.info(" Num split examples = %d", len(test_features)) logger.info(" Batch size = %d", args.predict_batch_size) model.eval() all_results = [] logger.info("Start labeling.") for batch in tqdm(test_dataloader, desc="Testing"): if n_gpu == 1: batch = batch_to_device(batch, device) inputs = data_reader.generate_inputs(batch, test_features, model_state=ModelState.Test) with torch.no_grad(): output_dict = model(**inputs) batch_choice_logits, batch_sentence_logits = output_dict[ "choice_logits"], output_dict["sentence_logits"] batch_sentence_mask = output_dict["sentence_mask"] example_indices = batch[-1] # batch_beam_results = batch_choice_beam_search(batch_sentence_logits, batch_sentence_mask) batch_topk_results = batch_topk(batch_sentence_logits, batch_sentence_mask) for i, example_index in enumerate(example_indices): choice_logits = batch_choice_logits[i].detach().cpu() evidence_list = batch_topk_results[i] test_feature = test_features[example_index.item()] unique_id = int(test_feature.unique_id) all_results.append( RawOutput(unique_id=unique_id, model_output={ "choice_logits": choice_logits, "evidence_list": evidence_list })) output_prediction_file = os.path.join(args.predict_dir, 'sentence_id_file.json') data_reader.predict_sentence_ids( test_examples, test_features, all_results, output_prediction_file, weight_threshold=args.weight_threshold, only_correct=args.only_correct, label_threshold=args.label_threshold)
def run_classifier_w_args(args): if args.server_ip and args.server_port: # Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script import ptvsd print("Waiting for debugger attach") ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True) ptvsd.wait_for_attach() processors = { "cola": ColaProcessor, "mnli": MnliProcessor, "mnli-mm": MnliMismatchedProcessor, "mrpc": MrpcProcessor, "sst-2": Sst2Processor, "sts-b": StsbProcessor, "qqp": QqpProcessor, "qnli": QnliProcessor, "rte": RteProcessor, "wnli": WnliProcessor, } output_modes = { "cola": "classification", "mnli": "classification", "mrpc": "classification", "sst-2": "classification", "sts-b": "regression", "qqp": "classification", "qnli": "classification", "rte": "classification", "wnli": "classification", } if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logging.basicConfig( format='%(asctime)s - %(levelname)s - %(name)s - %(message)s', datefmt='%m/%d/%Y %H:%M:%S', level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN) logger.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_eval: raise ValueError( "At least one of `do_train` or `do_eval` must be True.") # if os.path.exists(args.output_dir) and os.listdir( # args.output_dir) and args.do_train: # raise ValueError( # "Output directory ({}) already exists and is not empty.".format( # args.output_dir)) if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) task_name = args.task_name.lower() if task_name not in processors: raise ValueError("Task not found: %s" % (task_name)) processor = processors[task_name]() output_mode = output_modes[task_name] label_list = processor.get_labels() num_labels = len(label_list) tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case) train_examples = None num_train_optimization_steps = None if args.do_train: # train_examples = processor.get_train_examples(args.data_dir) train_examples = processor.get_dev_examples(args.data_dir) num_train_optimization_steps = int( len(train_examples) / args.train_batch_size / args.gradient_accumulation_steps) * args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) # Prepare model cache_dir = args.cache_dir if args.cache_dir else os.path.join( str(PYTORCH_PRETRAINED_BERT_CACHE), 'distributed_{}'.format( args.local_rank)) model = BertForSequenceClassification.from_pretrained( args.bert_model, cache_dir=cache_dir, num_labels=num_labels, config_dir=args.config_dir, config=args.config) if args.fp16: model.half() model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) # Prepare optimizer if args.do_train: param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [ p for n, p in param_optimizer if not any(nd in n for nd in no_decay) ], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule( warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 nb_tr_steps = 0 tr_loss = 0 if args.do_train: train_features = convert_examples_to_features(train_examples, label_list, args.max_seq_length, tokenizer, output_mode) logger.info("***** Running training *****") logger.info(" Num examples = %d", len(train_examples)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) all_input_ids = torch.tensor([f.input_ids for f in train_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in train_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in train_features], dtype=torch.long) if output_mode == "classification": all_label_ids = torch.tensor([f.label_id for f in train_features], dtype=torch.long) elif output_mode == "regression": all_label_ids = torch.tensor([f.label_id for f in train_features], dtype=torch.float) train_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) model.train() activations = [] activation = {} def get_activation(name): def hook(model, input, output): activation[name] = output.detach().cpu() return hook import copy for name, layer in model.module.bert.encoder.layer._modules.items(): # output module has layernorm, and dropout is not considered # if name is 'output' or name is 'dropout' or name is 'layernorm': # continue # If module has children, recursively add quant activation to the # sub-modules of the module. layer.register_forward_hook(get_activation(name)) for step, batch in enumerate(tqdm(train_dataloader, desc="Iteration")): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, label_ids = batch # define a new function to compute loss values for both output_modes logits = model(input_ids, segment_ids, input_mask, labels=None) activations.append(copy.deepcopy(activation)) activation = {} import pickle outfile = open(os.path.join(args.output_dir, 'activations'), 'wb') pickle.dump(activations, outfile) outfile.close()
def main(): parser = argparse.ArgumentParser() ## Required parameters parser.add_argument("--train_corpus", default=None, type=str, required=True, help="The input train corpus.") parser.add_argument( "--bert_model", default=None, type=str, required=True, help="Bert pre-trained model selected in the list: bert-base-uncased, " "bert-large-uncased, bert-base-cased, bert-base-multilingual, bert-base-chinese." ) parser.add_argument( "--output_dir", default=None, type=str, required=True, help="The output directory where the model checkpoints will be written." ) ## Other parameters parser.add_argument( "--max_seq_length", default=128, type=int, help= "The maximum total input sequence length after WordPiece tokenization. \n" "Sequences longer than this will be truncated, and sequences shorter \n" "than this will be padded.") parser.add_argument("--do_train", action='store_true', help="Whether to run training.") parser.add_argument("--train_batch_size", default=32, type=int, help="Total batch size for training.") parser.add_argument("--learning_rate", default=3e-5, type=float, help="The initial learning rate for Adam.") parser.add_argument("--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform.") parser.add_argument( "--warmup_proportion", default=0.1, type=float, help= "Proportion of training to perform linear learning rate warmup for. " "E.g., 0.1 = 10%% of training.") parser.add_argument("--no_cuda", action='store_true', help="Whether not to use CUDA when available") parser.add_argument( "--on_memory", action='store_true', help="Whether to load train samples into memory or use disk") parser.add_argument( "--do_lower_case", action='store_true', help= "Whether to lower case the input text. True for uncased models, False for cased models." ) parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus") parser.add_argument('--seed', type=int, default=42, help="random seed for initialization") parser.add_argument( '--gradient_accumulation_steps', type=int, default=1, help= "Number of updates steps to accumualte before performing a backward/update pass." ) parser.add_argument( '--fp16', action='store_true', help="Whether to use 16-bit float precision instead of 32-bit") parser.add_argument( '--loss_scale', type=float, default=0, help= "Loss scaling to improve fp16 numeric stability. Only used when fp16 set to True.\n" "0 (default value): dynamic loss scaling.\n" "Positive power of 2: static loss scaling value.\n") args = parser.parse_args() if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logger.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train: raise ValueError( "Training is currently the only implemented execution option. Please set `do_train`." ) if os.path.exists(args.output_dir) and os.listdir(args.output_dir): raise ValueError( "Output directory ({}) already exists and is not empty.".format( args.output_dir)) if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case) #train_examples = None num_train_optimization_steps = None if args.do_train: print("Loading Train Dataset", args.train_corpus) train_dataset = BERTDataset(args.train_corpus, tokenizer, seq_len=args.max_seq_length, corpus_lines=None, on_memory=args.on_memory) num_train_optimization_steps = int( len(train_dataset) / args.train_batch_size / args.gradient_accumulation_steps) * args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) # Prepare model model = BertForPreTraining.from_pretrained(args.bert_model) if args.fp16: model.half() model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) # Prepare optimizer if args.do_train: param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [ p for n, p in param_optimizer if not any(nd in n for nd in no_decay) ], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule( warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) if not args.do_train: return def save(): # Save a trained model logger.info("** ** * Saving fine - tuned model ** ** * ") model_to_save = model.module if hasattr( model, 'module') else model # Only save the model it-self output_model_file = os.path.join(args.output_dir, "pytorch_model.bin") torch.save(model_to_save.state_dict(), output_model_file) global_step = 0 logger.info("***** Running training *****") logger.info(" Num examples = %d", len(train_dataset)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) if args.local_rank == -1: train_sampler = RandomSampler(train_dataset) else: #TODO: check if this works with current data generator from disk that relies on next(file) # (it doesn't return item back by index) train_sampler = DistributedSampler(train_dataset) train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size, num_workers=2) model.train() nb_tr_examples, nb_tr_steps = 0, 0 try: for _ in trange(int(args.num_train_epochs), desc="Epoch"): tr_losses = deque(maxlen=20) pbar = tqdm(train_dataloader, desc="Iteration") for step, batch in enumerate(pbar): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, lm_label_ids, is_next = batch loss = model(input_ids, segment_ids, input_mask, lm_label_ids, is_next) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * warmup_linear.get_lr( global_step, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 tr_losses.append(loss.item()) pbar.set_postfix(loss=f'{np.mean(tr_losses):.4f}') if (step + 1) % 20 == 0: json_log_plots.write_event(Path(args.output_dir), nb_tr_examples, loss=np.mean(tr_losses)) if (step + 1) % 10000 == 0: save() except KeyboardInterrupt: print('Ctrl+C pressed, saving checkpoint') save() raise save()
def main(): logger.info("Running %s" % ' '.join(sys.argv)) parser = argparse.ArgumentParser() ## Required parameters parser.add_argument("--do_train", action='store_true', help="Whether to run training.") parser.add_argument("--do_eval", action='store_true', help="Whether to run eval on the dev set.") parser.add_argument( "--data_dir", default="data/", type=str, help= "The input data dir. Should contain the .tsv files (or other data files) for the task." ) parser.add_argument( "--output_dir", default="checkpoints/predictor/", type=str, help= "The output directory where the model predictions and checkpoints will be written." ) parser.add_argument( "--load_dir", type=str, help= "The output directory where the model checkpoints will be loaded during evaluation" ) parser.add_argument('--load_step', type=int, default=0, help="The checkpoint step to be loaded") parser.add_argument("--fact", default="first", choices=["first", "second"], type=str, help="Whether to put fact in front.") parser.add_argument( "--test_set", default="dev", choices=["dev", "test", "simple_test", "complex_test", "small_test"], help="Which test set is used for evaluation", type=str) parser.add_argument("--train_batch_size", default=18, type=int, help="Total batch size for training.") parser.add_argument("--eval_batch_size", default=18, type=int, help="Total batch size for eval.") ## Other parameters parser.add_argument( "--bert_model", default="bert-base-uncased", type=str, help="Bert pre-trained model selected in the list: bert-base-uncased, " "bert-large-uncased, bert-base-cased, bert-large-cased, bert-base-multilingual-uncased, " "bert-base-multilingual-cased, bert-base-chinese.") parser.add_argument("--task_name", default="QQP", type=str, help="The name of the task to train.") parser.add_argument('--period', type=int, default=500) parser.add_argument( "--cache_dir", default="", type=str, help= "Where do you want to store the pre-trained models downloaded from s3") parser.add_argument( "--max_seq_length", default=256, type=int, help= "The maximum total input sequence length after WordPiece tokenization. \n" "Sequences longer than this will be truncated, and sequences shorter \n" "than this will be padded.") parser.add_argument( "--do_lower_case", action='store_true', help="Set this flag if you are using an uncased model.") parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.") parser.add_argument("--num_train_epochs", default=20.0, type=float, help="Total number of training epochs to perform.") parser.add_argument( "--warmup_proportion", default=0.1, type=float, help= "Proportion of training to perform linear learning rate warmup for. " "E.g., 0.1 = 10%% of training.") parser.add_argument("--no_cuda", action='store_true', help="Whether not to use CUDA when available") parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus") parser.add_argument('--seed', type=int, default=42, help="random seed for initialization") parser.add_argument( '--gradient_accumulation_steps', type=int, default=1, help= "Number of updates steps to accumulate before performing a backward/update pass." ) parser.add_argument( '--fp16', action='store_true', help="Whether to use 16-bit float precision instead of 32-bit") parser.add_argument( '--loss_scale', type=float, default=0, help= "Loss scaling to improve fp16 numeric stability. Only used when fp16 set to True.\n" "0 (default value): dynamic loss scaling.\n" "Positive power of 2: static loss scaling value.\n") parser.add_argument('--server_ip', type=str, default='', help="Can be used for distant debugging.") parser.add_argument('--server_port', type=str, default='', help="Can be used for distant debugging.") args = parser.parse_args() pprint(vars(args)) sys.stdout.flush() if args.server_ip and args.server_port: # Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script import ptvsd print("Waiting for debugger attach") ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True) ptvsd.wait_for_attach() processors = { "qqp": QqpProcessor, } output_modes = { "qqp": "classification", } if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logging.basicConfig( format='%(asctime)s - %(levelname)s - %(name)s - %(message)s', datefmt='%m/%d/%Y %H:%M:%S', level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN) logger.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_eval: raise ValueError( "At least one of `do_train` or `do_eval` must be True.") logger.info( "Datasets are loaded from {}\n Outputs will be saved to {}".format( args.data_dir, args.output_dir)) if os.path.exists(args.output_dir) and os.listdir( args.output_dir) and args.do_train: raise ValueError( "Output directory ({}) already exists and is not empty.".format( args.output_dir)) if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) task_name = args.task_name.lower() if task_name not in processors: raise ValueError("Task not found: %s" % (task_name)) processor = processors[task_name]() output_mode = output_modes[task_name] label_list = processor.get_labels() num_labels = len(label_list) tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case) train_examples = None num_train_optimization_steps = None if args.do_train: train_examples = processor.get_train_examples(args.data_dir) num_train_optimization_steps = int( len(train_examples) / args.train_batch_size / args.gradient_accumulation_steps) * args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) cache_dir = args.cache_dir if args.cache_dir else os.path.join( str(PYTORCH_PRETRAINED_BERT_CACHE), 'distributed_{}'.format( args.local_rank)) if args.load_dir: load_dir = args.load_dir else: load_dir = args.bert_model model = BertForSequenceClassification.from_pretrained( load_dir, cache_dir=cache_dir, num_labels=num_labels) if args.fp16: model.half() model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) # Prepare optimizer if args.do_train: param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [ p for n, p in param_optimizer if not any(nd in n for nd in no_decay) ], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule( warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 tr_loss = 0 best_F1 = 0 if args.do_train: train_features = convert_examples_to_features(train_examples, label_list, args.max_seq_length, tokenizer, output_mode) logger.info("***** Running training *****") logger.info(" Num examples = %d", len(train_examples)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) all_input_ids = torch.tensor([f.input_ids for f in train_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in train_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in train_features], dtype=torch.long) all_label_ids = torch.tensor([f.label_id for f in train_features], dtype=torch.float) train_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) model.train() for epoch in range(int(args.num_train_epochs)): logger.info("Training epoch {} ...".format(epoch)) nb_tr_examples, nb_tr_steps = 0, 0 for step, batch in enumerate(train_dataloader): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, label_ids = batch # define a new function to compute loss values for both output_modes logits = model(input_ids, segment_ids, input_mask, labels=None) loss_fct = BCEWithLogitsLoss() loss = loss_fct(logits.view(-1, 1), label_ids.view(-1, 1)) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * warmup_linear.get_lr( global_step, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() model.zero_grad() global_step += 1 if (step + 1) % args.period == 0: # Save a trained model, configuration and tokenizer model_to_save = model.module if hasattr( model, 'module') else model # If we save using the predefined names, we can load using `from_pretrained` model.eval() torch.set_grad_enabled(False) # turn off gradient tracking F1 = evaluate(args, model, device, processor, label_list, num_labels, tokenizer, output_mode) if F1 > best_F1: output_dir = os.path.join( args.output_dir, 'save_step_{}'.format(global_step)) if not os.path.exists(output_dir): os.makedirs(output_dir) output_model_file = os.path.join( output_dir, WEIGHTS_NAME) output_config_file = os.path.join( output_dir, CONFIG_NAME) torch.save(model_to_save.state_dict(), output_model_file) model_to_save.config.to_json_file(output_config_file) tokenizer.save_vocabulary(output_dir) best_F1 = F1 model.train() # turn on train mode torch.set_grad_enabled(True) # start gradient tracking tr_loss = 0 # do eval before exit if args.do_eval: if not args.do_train: global_step = 0 output_dir = None save_dir = output_dir if output_dir is not None else args.load_dir load_step = args.load_step if args.load_dir is not None: load_step = int( os.path.split(args.load_dir)[1].replace('save_step_', '')) print("load_step = {}".format(load_step)) F1 = evaluate(args, model, device, processor, label_list, num_labels, tokenizer, output_mode) with open("test_result.txt", 'a') as f: print("load step: {} F1: {}".format(str(load_step), str(F1)), file=f)
def BertSquad(file="", mode='predict', bert_model="bert-base-uncased", output='./output'): parser = {} parser["bert_model"] = bert_model parser["output_dir"] = output parser["train_file"] = file parser["predict_file"] = file parser["max_seq_length"] = 384 parser["doc_stride"] = 128 parser["max_query_length"] = 64 parser["do_train"] = mode == 'train' parser["do_predict"] = mode == 'predict' parser["train_batch_size"] = 32 parser["predict_batch_size"] = 8 parser["learning_rate"] = 5e-5 parser["num_train_epochs"] = 3.0 parser["warmup_proportion"] = 0.1 parser["n_best_size"] = 20 parser["max_answer_length"] = 30 parser["verbose_logging"] = False parser["no_cuda"] = False parser['seed'] = 42 parser['gradient_accumulation_steps'] = 1 parser["do_lower_case"] = ('uncased' in bert_model) parser["local_rank"] = -1 parser['fp16'] = False parser['overwrite_output_dir'] = False parser['loss_scale'] = 0 parser['version_2_with_negative'] = False parser['null_score_diff_threshold'] = 0.0 parser['server_ip'] = '' parser['server_port'] = '' args = AttrDict.AttrDict(parser) print(args) if args.server_ip and args.server_port: # Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script import ptvsd print("Waiting for debugger attach") ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True) ptvsd.wait_for_attach() if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logging.basicConfig( format='%(asctime)s - %(levelname)s - %(name)s - %(message)s', datefmt='%m/%d/%Y %H:%M:%S', level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN) logger.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_predict: raise ValueError( "At least one of `do_train` or `do_predict` must be True.") if args.do_train: if not args.train_file: raise ValueError( "If `do_train` is True, then `train_file` must be specified.") if args.do_predict: if not args.predict_file: raise ValueError( "If `do_predict` is True, then `predict_file` must be specified." ) if os.path.exists(args.output_dir) and os.listdir( args.output_dir ) and args.do_train and not args.overwrite_output_dir: raise ValueError( "Output directory () already exists and is not empty.") if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) if args.local_rank not in [-1, 0]: torch.distributed.barrier( ) # Make sure only the first process in distributed training will download model & vocab tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case) model = BertForQuestionAnswering.from_pretrained(args.bert_model) if args.local_rank == 0: torch.distributed.barrier() if args.fp16: model.half() model.to(device) if args.local_rank != -1: model = torch.nn.parallel.DistributedDataParallel( model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True) elif n_gpu > 1: model = torch.nn.DataParallel(model) if args.do_train: if args.local_rank in [-1, 0]: tb_writer = SummaryWriter() # Prepare data loader train_examples = read_squad_examples( input_file=args.train_file, is_training=True, version_2_with_negative=args.version_2_with_negative) cached_train_features_file = args.train_file + '_{0}_{1}_{2}_{3}'.format( list(filter(None, args.bert_model.split('/'))).pop(), str(args.max_seq_length), str(args.doc_stride), str(args.max_query_length)) try: with open(cached_train_features_file, "rb") as reader: train_features = pickle.load(reader) except: train_features = convert_examples_to_features( examples=train_examples, tokenizer=tokenizer, max_seq_length=args.max_seq_length, doc_stride=args.doc_stride, max_query_length=args.max_query_length, is_training=True) if args.local_rank == -1 or torch.distributed.get_rank() == 0: logger.info(" Saving train features into cached file %s", cached_train_features_file) with open(cached_train_features_file, "wb") as writer: pickle.dump(train_features, writer) all_input_ids = torch.tensor([f.input_ids for f in train_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in train_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in train_features], dtype=torch.long) all_start_positions = torch.tensor( [f.start_position for f in train_features], dtype=torch.long) all_end_positions = torch.tensor( [f.end_position for f in train_features], dtype=torch.long) train_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_start_positions, all_end_positions) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) num_train_optimization_steps = len( train_dataloader ) // args.gradient_accumulation_steps * args.num_train_epochs # if args.local_rank != -1: # num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size() # Prepare optimizer param_optimizer = list(model.named_parameters()) # hack to remove pooler, which is not used # thus it produce None grad that break apex param_optimizer = [n for n in param_optimizer if 'pooler' not in n[0]] no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [ p for n, p in param_optimizer if not any(nd in n for nd in no_decay) ], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule( warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 logger.info("***** Running training *****") logger.info(" Num orig examples = %d", len(train_examples)) logger.info(" Num split examples = %d", len(train_features)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) model.train() for epoch in trange(int(args.num_train_epochs), desc="Epoch"): for step, batch in enumerate( tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])): if n_gpu == 1: batch = tuple( t.to(device) for t in batch) # multi-gpu does scattering it-self input_ids, input_mask, segment_ids, start_positions, end_positions = batch loss = model(input_ids, segment_ids, input_mask, start_positions, end_positions) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used and handles this automatically lr_this_step = args.learning_rate * warmup_linear.get_lr( global_step, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 if args.local_rank in [-1, 0]: tb_writer.add_scalar('lr', optimizer.get_lr()[0], global_step) tb_writer.add_scalar('loss', loss.item(), global_step) if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0): # Save a trained model, configuration and tokenizer model_to_save = model.module if hasattr( model, 'module') else model # Only save the model it-self # If we save using the predefined names, we can load using `from_pretrained` output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME) output_config_file = os.path.join(args.output_dir, CONFIG_NAME) torch.save(model_to_save.state_dict(), output_model_file) model_to_save.config.to_json_file(output_config_file) tokenizer.save_vocabulary(args.output_dir) # Load a trained model and vocabulary that you have fine-tuned model = BertForQuestionAnswering.from_pretrained(args.output_dir) tokenizer = BertTokenizer.from_pretrained( args.output_dir, do_lower_case=args.do_lower_case) # Good practice: save your training arguments together with the trained model output_args_file = os.path.join(args.output_dir, 'training_args.bin') torch.save(args, output_args_file) else: # Load a trained model and vocabulary that you have fine-tuned model = BertForQuestionAnswering.from_pretrained(args.output_dir) tokenizer = BertTokenizer.from_pretrained( args.output_dir, do_lower_case=args.do_lower_case) model.to(device) if args.do_predict and (args.local_rank == -1 or torch.distributed.get_rank() == 0): eval_examples = read_squad_examples( input_file=args.predict_file, is_training=False, version_2_with_negative=args.version_2_with_negative) eval_features = convert_examples_to_features( examples=eval_examples, tokenizer=tokenizer, max_seq_length=args.max_seq_length, doc_stride=args.doc_stride, max_query_length=args.max_query_length, is_training=False) logger.info("***** Running predictions *****") logger.info(" Num orig examples = %d", len(eval_examples)) logger.info(" Num split examples = %d", len(eval_features)) logger.info(" Batch size = %d", args.predict_batch_size) all_input_ids = torch.tensor([f.input_ids for f in eval_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in eval_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in eval_features], dtype=torch.long) all_example_index = torch.arange(all_input_ids.size(0), dtype=torch.long) eval_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_example_index) # Run prediction for full data eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.predict_batch_size) model.eval() all_results = [] logger.info("Start evaluating") for input_ids, input_mask, segment_ids, example_indices in tqdm( eval_dataloader, desc="Evaluating", disable=args.local_rank not in [-1, 0]): if len(all_results) % 1000 == 0: logger.info("Processing example: %d" % (len(all_results))) input_ids = input_ids.to(device) input_mask = input_mask.to(device) segment_ids = segment_ids.to(device) with torch.no_grad(): batch_start_logits, batch_end_logits = model( input_ids, segment_ids, input_mask) for i, example_index in enumerate(example_indices): start_logits = batch_start_logits[i].detach().cpu().tolist() end_logits = batch_end_logits[i].detach().cpu().tolist() eval_feature = eval_features[example_index.item()] unique_id = int(eval_feature.unique_id) all_results.append( RawResult(unique_id=unique_id, start_logits=start_logits, end_logits=end_logits)) output_prediction_file = os.path.join(args.output_dir, "predictions.json") output_nbest_file = os.path.join(args.output_dir, "nbest_predictions.json") output_null_log_odds_file = os.path.join(args.output_dir, "null_odds.json") write_predictions(eval_examples, eval_features, all_results, args.n_best_size, args.max_answer_length, args.do_lower_case, output_prediction_file, output_nbest_file, output_null_log_odds_file, args.verbose_logging, args.version_2_with_negative, args.null_score_diff_threshold)
def BertSwag(mode = 'eval', bert_model = "bert-base-uncased", data_dir = './SWAG_data'): parser = {} parser["data_dir"]=data_dir, parser["bert_model"]=bert_model, parser["output_dir"]=None, parser["max_seq_length"]=128, parser["do_train"] = (mode == 'train') parser["do_eval",] = (mode == 'eval') parser["do_lower_case"] = ('uncased' in bert_model) parser["train_batch_size"]=32, parser["eval_batch_size"]=8, parser["learning_rate"]=5e-5, parser["num_train_epochs"]=3.0, parser["warmup_proportion"]=0.1, parser["no_cuda"] = False parser["local_rank"] = -1 parser['seed'] = 42 parser['gradient_accumulation_steps') parser['fp16'] = False parser['loss_scale'] = 0 args = AttrDict.AttrDict(parser) if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logger.info("device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}".format( device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError("Invalid gradient_accumulation_steps parameter: {}, should be >= 1".format( args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_eval: raise ValueError("At least one of `do_train` or `do_eval` must be True.") if os.path.exists(args.output_dir) and os.listdir(args.output_dir): raise ValueError("Output directory ({}) already exists and is not empty.".format(args.output_dir)) if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case) # Prepare model model = BertForMultipleChoice.from_pretrained(args.bert_model, cache_dir=os.path.join(str(PYTORCH_PRETRAINED_BERT_CACHE), 'distributed_{}'.format(args.local_rank)), num_choices=4) if args.fp16: model.half() model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training.") model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) if args.do_train: # Prepare data loader train_examples = read_swag_examples(os.path.join(args.data_dir, 'train.csv'), is_training = True) train_features = convert_examples_to_features( train_examples, tokenizer, args.max_seq_length, True) all_input_ids = torch.tensor(select_field(train_features, 'input_ids'), dtype=torch.long) all_input_mask = torch.tensor(select_field(train_features, 'input_mask'), dtype=torch.long) all_segment_ids = torch.tensor(select_field(train_features, 'segment_ids'), dtype=torch.long) all_label = torch.tensor([f.label for f in train_features], dtype=torch.long) train_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) num_train_optimization_steps = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size() # Prepare optimizer param_optimizer = list(model.named_parameters()) # hack to remove pooler, which is not used # thus it produce None grad that break apex param_optimizer = [n for n in param_optimizer] no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [ {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01}, {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0} ] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training.") optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule(warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 logger.info("***** Running training *****") logger.info(" Num examples = %d", len(train_examples)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) model.train() for _ in trange(int(args.num_train_epochs), desc="Epoch"): tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 for step, batch in enumerate(tqdm(train_dataloader, desc="Iteration")): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, label_ids = batch loss = model(input_ids, segment_ids, input_mask, label_ids) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.fp16 and args.loss_scale != 1.0: # rescale loss for fp16 training # see https://docs.nvidia.com/deeplearning/sdk/mixed-precision-training/index.html loss = loss * args.loss_scale if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 if args.fp16: optimizer.backward(loss) else: loss.backward() if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * warmup_linear.get_lr(global_step, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 if args.do_train: # Save a trained model, configuration and tokenizer model_to_save = model.module if hasattr(model, 'module') else model # Only save the model it-self # If we save using the predefined names, we can load using `from_pretrained` output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME) output_config_file = os.path.join(args.output_dir, CONFIG_NAME) torch.save(model_to_save.state_dict(), output_model_file) model_to_save.config.to_json_file(output_config_file) tokenizer.save_vocabulary(args.output_dir) # Load a trained model and vocabulary that you have fine-tuned model = BertForMultipleChoice.from_pretrained(args.output_dir, num_choices=4) tokenizer = BertTokenizer.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case) else: model = BertForMultipleChoice.from_pretrained(args.bert_model, num_choices=4) model.to(device) if args.do_eval and (args.local_rank == -1 or torch.distributed.get_rank() == 0): eval_examples = read_swag_examples(os.path.join(args.data_dir, 'val.csv'), is_training = True) eval_features = convert_examples_to_features( eval_examples, tokenizer, args.max_seq_length, True) logger.info("***** Running evaluation *****") logger.info(" Num examples = %d", len(eval_examples)) logger.info(" Batch size = %d", args.eval_batch_size) all_input_ids = torch.tensor(select_field(eval_features, 'input_ids'), dtype=torch.long) all_input_mask = torch.tensor(select_field(eval_features, 'input_mask'), dtype=torch.long) all_segment_ids = torch.tensor(select_field(eval_features, 'segment_ids'), dtype=torch.long) all_label = torch.tensor([f.label for f in eval_features], dtype=torch.long) eval_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label) # Run prediction for full data eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size) model.eval() eval_loss, eval_accuracy = 0, 0 nb_eval_steps, nb_eval_examples = 0, 0 for input_ids, input_mask, segment_ids, label_ids in tqdm(eval_dataloader, desc="Evaluating"): input_ids = input_ids.to(device) input_mask = input_mask.to(device) segment_ids = segment_ids.to(device) label_ids = label_ids.to(device) with torch.no_grad(): tmp_eval_loss = model(input_ids, segment_ids, input_mask, label_ids) logits = model(input_ids, segment_ids, input_mask) logits = logits.detach().cpu().numpy() label_ids = label_ids.to('cpu').numpy() tmp_eval_accuracy = accuracy(logits, label_ids) eval_loss += tmp_eval_loss.mean().item() eval_accuracy += tmp_eval_accuracy nb_eval_examples += input_ids.size(0) nb_eval_steps += 1 eval_loss = eval_loss / nb_eval_steps eval_accuracy = eval_accuracy / nb_eval_examples result = {'eval_loss': eval_loss, 'eval_accuracy': eval_accuracy, 'global_step': global_step, 'loss': tr_loss/global_step} output_eval_file = os.path.join(args.output_dir, "eval_results.txt") with open(output_eval_file, "w") as writer: logger.info("***** Eval results *****") for key in sorted(result.keys()): logger.info(" %s = %s", key, str(result[key])) writer.write("%s = %s\n" % (key, str(result[key])))
def model_train(bert_model, max_seq_length, do_lower_case, num_train_epochs, train_batch_size, gradient_accumulation_steps, learning_rate, weight_decay, loss_scale, warmup_proportion, processor, device, n_gpu, fp16, cache_dir, local_rank, dry_run, no_cuda, output_dir=None, model_file=None): if gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(gradient_accumulation_steps)) train_batch_size = train_batch_size // gradient_accumulation_steps train_dataloader = processor.get_train_examples(train_batch_size, local_rank) # Batch sampler divides by batch_size! num_train_optimization_steps = int( len(train_dataloader) * num_train_epochs / gradient_accumulation_steps) if local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) # Prepare model cache_dir = cache_dir if cache_dir else os.path.join( str(PYTORCH_PRETRAINED_BERT_CACHE), 'distributed_{}'.format(local_rank)) model = BertForSequenceClassification.from_pretrained( bert_model, cache_dir=cache_dir, num_labels=processor.num_labels()) if fp16: model.half() model.to(device) if local_rank != -1: try: # noinspection PyPep8Naming from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': weight_decay }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=learning_rate, bias_correction=False, max_grad_norm=1.0) if loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=loss_scale) warmup_linear = WarmupLinearSchedule( warmup=warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=learning_rate, warmup=warmup_proportion, t_total=num_train_optimization_steps) warmup_linear = None global_step = 0 logger.info("***** Running training *****") logger.info(" Num examples = %d", len(train_dataloader)) logger.info(" Batch size = %d", train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) logger.info(" Num epochs = %d", num_train_epochs) logger.info(" Target learning rate = %f", learning_rate) model_config = { "bert_model": bert_model, "do_lower": do_lower_case, "max_seq_length": max_seq_length } def save_model(lh): if output_dir is None: return if model_file is None: output_model_file = os.path.join( output_dir, "pytorch_model_ep{}.bin".format(ep)) else: output_model_file = os.path.join(output_dir, model_file) # Save a trained model and the associated configuration model_to_save = model.module if hasattr( model, 'module') else model # Only save the model it-self torch.save(model_to_save.state_dict(), output_model_file) output_config_file = os.path.join(output_dir, CONFIG_NAME) with open(output_config_file, 'w') as f: f.write(model_to_save.config.to_json_string()) json.dump(model_config, open(os.path.join(output_dir, "model_config.json"), "w")) lh = pd.DataFrame(lh, columns=['global_step', 'loss']) loss_history_file = os.path.join(output_dir, "loss_ep{}.pkl".format(ep)) lh.to_pickle(loss_history_file) def load_model(epoch): if output_dir is None: return False if model_file is None: output_model_file = os.path.join( output_dir, "pytorch_model_ep{}.bin".format(epoch)) else: output_model_file = os.path.join(output_dir, model_file) if not os.path.exists(output_model_file): return False logger.info("Loading epoch {} from disk...".format(epoch)) model.load_state_dict( torch.load(output_model_file, map_location=lambda storage, loc: storage if no_cuda else None)) return True model.train() for ep in trange(1, int(num_train_epochs) + 1, desc="Epoch"): if dry_run and ep > 1: logger.info("Dry run. Stop.") break if model_file is None and load_model(ep): global_step += len(train_dataloader) // gradient_accumulation_steps continue loss_history = list() tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 with tqdm(total=len(train_dataloader), desc=f"Epoch {ep}") as pbar: for step, batch in enumerate(train_dataloader): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, labels = batch loss = model(input_ids, segment_ids, input_mask, labels) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if gradient_accumulation_steps > 1: loss = loss / gradient_accumulation_steps if fp16: optimizer.backward(loss) else: loss.backward() loss_history.append((global_step, loss.item())) tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 pbar.update(1) mean_loss = tr_loss * gradient_accumulation_steps / nb_tr_steps pbar.set_postfix_str(f"Loss: {mean_loss:.5f}") if dry_run and len(loss_history) > 2: logger.info("Dry run. Stop.") break if (step + 1) % gradient_accumulation_steps == 0: if fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = learning_rate * warmup_linear.get_lr( global_step, warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 save_model(loss_history) return model, model_config
def main(): parser = argparse.ArgumentParser() ## Required parameters parser.add_argument("--data_dir", default=None, type=str, required=True, help="The input data dir. Should contain the .tsv files (or other data files) for the task.") parser.add_argument("--bert_model", default=None, type=str, required=True, help="Bert pre-trained model selected in the list: bert-base-uncased, " "bert-large-uncased, bert-base-cased, bert-large-cased, bert-base-multilingual-uncased, " "bert-base-multilingual-cased, bert-base-chinese.") parser.add_argument("--bert_model_path", default="", type=str, required=False, help="Bert pretrained saved pytorch model path.") parser.add_argument("--experiment", default="attention", type=str, required=False, help="4 types: attention, base, long, ablation. " "base: original bert" "long: uses an lstm to keep track of all bert hidden representations, but backprop over the first" "attention: uses an lstm + attention mechanism to backprop over more than the first representation" "ablation: concat all the hidden representations" ) parser.add_argument("--task_name", default=None, type=str, required=True, help="The name of the task to train.") parser.add_argument("--output_dir", default=None, type=str, required=True, help="The output directory where the model predictions and checkpoints will be written.") ## Other parameters parser.add_argument("--cache_dir", default="", type=str, help="Where do you want to store the pre-trained models downloaded from s3") parser.add_argument("--max_seq_length", default=128, type=int, help="The maximum total input sequence length after WordPiece tokenization. \n" "Sequences longer than this will be truncated, and sequences shorter \n" "than this will be padded.") parser.add_argument("--seq_segments", default=8, type=int, help="The number of sequence steps") parser.add_argument("--do_train", action='store_true', help="Whether to run training.") parser.add_argument("--do_shuffle", action='store_true', help="Whether to run training.") parser.add_argument("--do_eval", action='store_true', help="Whether to run eval on the dev set.") parser.add_argument("--do_lower_case", action='store_true', help="Set this flag if you are using an uncased model.") parser.add_argument("--super_debug", action='store_true', help="hack for debugging.") parser.add_argument("--train_batch_size", default=32, type=int, help="Total batch size for training.") parser.add_argument("--eval_batch_size", default=32, type=int, help="Total batch size for eval.") parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.") parser.add_argument("--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform.") parser.add_argument("--warmup_proportion", default=0.1, type=float, help="Proportion of training to perform linear learning rate warmup for. " "E.g., 0.1 = 10%% of training.") parser.add_argument("--no_cuda", action='store_true', help="Whether not to use CUDA when available") parser.add_argument('--overwrite_output_dir', action='store_true', help="Overwrite the content of the output directory") parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus") parser.add_argument('--seed', type=int, default=42, help="random seed for initialization") parser.add_argument('--gradient_accumulation_steps', type=int, default=1, help="Number of updates steps to accumulate before performing a backward/update pass.") parser.add_argument('--fp16', action='store_true', help="Whether to use 16-bit float precision instead of 32-bit") parser.add_argument('--loss_scale', type=float, default=0, help="Loss scaling to improve fp16 numeric stability. Only used when fp16 set to True.\n" "0 (default value): dynamic loss scaling.\n" "Positive power of 2: static loss scaling value.\n") parser.add_argument('--server_ip', type=str, default='', help="Can be used for distant debugging.") parser.add_argument('--server_port', type=str, default='', help="Can be used for distant debugging.") args = parser.parse_args() if args.server_ip and args.server_port: # Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script import ptvsd print("Waiting for debugger attach") ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True) ptvsd.wait_for_attach() if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') args.device = device logging.basicConfig(format = '%(asctime)s - %(levelname)s - %(name)s - %(message)s', datefmt = '%m/%d/%Y %H:%M:%S', level = logging.INFO if args.local_rank in [-1, 0] else logging.WARN) logger.info("device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}".format( device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError("Invalid gradient_accumulation_steps parameter: {}, should be >= 1".format( args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_eval: raise ValueError("At least one of `do_train` or `do_eval` must be True.") if os.path.exists(args.output_dir) and os.listdir(args.output_dir) and args.do_train and not args.overwrite_output_dir: raise ValueError("Output directory ({}) already exists and is not empty.".format(args.output_dir)) if not os.path.exists(args.output_dir) and args.local_rank in [-1, 0]: os.makedirs(args.output_dir) task_name = args.task_name.lower() if task_name not in processors: raise ValueError("Task not found: %s" % (task_name)) processor = processors[task_name]() output_mode = output_modes[task_name] label_list = processor.get_labels() num_labels = len(label_list) if args.local_rank not in [-1, 0]: torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case) cls_token = tokenizer.convert_tokens_to_ids(["[CLS]"]) sep_token = tokenizer.convert_tokens_to_ids(["[SEP]"]) '''if args.super_debug: cached_eval_features_file = os.path.join(args.data_dir, 'dev_{0}_{1}_{2}_{3}'.format( list(filter(None, args.bert_model.split('/'))).pop(), str(args.max_seq_length), str(task_name), str(args.seq_segments))) logger.info("Loading test dataset") eval_data = load_dataset(cached_eval_features_file, args, processor, tokenizer, output_mode, train = False) exit()''' #model = BertForSequenceClassification.from_pretrained(args.bert_model, num_labels = num_labels) #model = MyBertForMultiLabelSequenceClassification.from_pretrained(args.bert_model, num_labels = num_labels) model = get_model(args, num_labels) if args.bert_model_path != "": print("Loading model from: " + args.bert_model_path) if args.do_train: pretrained_dict = torch.load(args.bert_model_path) model_dict = model.state_dict() # 1. filter out unnecessary keys pretrained_dict = {k: v for k, v in pretrained_dict.items() if k in model_dict} '''if 'classifier.weight' in pretrained_dict and pretrained_dict['classifier.weight'].shape[0] != num_labels: del pretrained_dict['classifier.weight'] del pretrained_dict['classifier.bias'] if 'classifier2.weight' in pretrained_dict and pretrained_dict['classifier2.weight'].shape[0] != num_labels: del pretrained_dict['classifier2.weight'] del pretrained_dict['classifier2.bias']''' # 2. overwrite entries in the existing state dict model_dict.update(pretrained_dict) # 3. load the new state dict model.load_state_dict(model_dict) else: model.load_state_dict(torch.load(args.bert_model_path)) sig = Sigmoid() if args.local_rank == 0: torch.distributed.barrier() if args.fp16: model.half() model.to(device) if args.local_rank != -1: model = torch.nn.parallel.DistributedDataParallel(model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True) elif n_gpu > 1: model = torch.nn.DataParallel(model) global_step = 0 nb_tr_steps = 0 tr_loss = 0 loss_fct = CrossEntropyLoss() if args.do_train: if args.local_rank in [-1, 0]: tb_writer = SummaryWriter() cached_train_features_file = os.path.join(args.data_dir, 'train_{0}_{1}_{2}_{3}'.format( list(filter(None, args.bert_model.split('/'))).pop(), str(args.max_seq_length), str(task_name), str(args.seq_segments))) # Prepare data loader logger.info("Loading training dataset") train_data = load_dataset(cached_train_features_file, args, processor, tokenizer, output_mode) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) num_train_optimization_steps = (len(train_dataloader)) // args.gradient_accumulation_steps * args.num_train_epochs # Prepare optimizer param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [ {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01}, {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0} ] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training.") optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule(warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) logger.info("***** Running training *****") #logger.info(" Num examples = %d", len(train_examples)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) model.train() for i in trange(int(args.num_train_epochs), desc="Epoch", disable=args.local_rank not in [-1, 0]): tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 for step, t_batch in enumerate(tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])): input_ids, input_mask, segment_ids, label_ids = t_batch if args.do_shuffle: shuffled_index = torch.randperm(input_ids.shape[0]) shuffled_ids = input_ids[shuffled_index][:,:256] shuffled_mask = input_mask[shuffled_index][:,:256] shuffled_seg = segment_ids[shuffled_index][:,:256] input_ids[:,:256] = shuffled_ids input_mask[:,:256] = shuffled_mask segment_ids[:,:256] = shuffled_seg input_ids = input_ids.to(device) input_mask = input_mask.to(device) segment_ids = segment_ids.to(device) label_ids = label_ids.to(device) logits = model(input_ids, segment_ids, input_mask) loss = loss_fct(logits.view(-1, num_labels), label_ids.view(-1)) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * warmup_linear.get_lr(global_step, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 if args.local_rank in [-1, 0]: acc = np.sum(np.argmax(logits.cpu().detach().numpy(), axis=1) == label_ids.cpu().numpy()) / label_ids.shape[0] tb_writer.add_scalar('lr', optimizer.get_lr()[0], global_step) tb_writer.add_scalar('loss', loss.item(), global_step) tb_writer.add_scalar('acc', acc, global_step) ### Saving best-practices: if you use defaults names for the model, you can reload it using from_pretrained() ### Example: output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME) if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0): # Save a trained model, configuration and tokenizer model_to_save = model.module if hasattr(model, 'module') else model # Only save the model it-self # If we save using the predefined names, we can load using `from_pretrained` output_config_file = os.path.join(args.output_dir, CONFIG_NAME) torch.save(model_to_save.state_dict(), output_model_file) model_to_save.config.to_json_file(output_config_file) tokenizer.save_vocabulary(args.output_dir) # Load a trained model and vocabulary that you have fine-tuned #model = BertForSequenceClassification.from_pretrained(args.output_dir, num_labels=num_labels) tokenizer = BertTokenizer.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case) # Good practice: save your training arguments together with the trained model output_args_file = os.path.join(args.output_dir, 'training_args.bin') torch.save(args, output_args_file) open(os.path.join(args.output_dir, 'experiment_{}.txt'.format(args.experiment)), 'a').close() else: model = get_model(args, num_labels) model.load_state_dict(torch.load(output_model_file)) model.to(device) if args.local_rank != -1: model = torch.nn.parallel.DistributedDataParallel(model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True) elif n_gpu > 1: model = torch.nn.DataParallel(model) ### Evaluation if args.do_eval and (args.local_rank == -1 or torch.distributed.get_rank() == 0): cached_eval_features_file = os.path.join(args.data_dir, 'dev_{0}_{1}_{2}_{3}'.format( list(filter(None, args.bert_model.split('/'))).pop(), str(args.max_seq_length), str(task_name), str(args.seq_segments))) logger.info("Loading test dataset") eval_data = load_dataset(cached_eval_features_file, args, processor, tokenizer, output_mode, train = False) #import pdb; pdb.set_trace() logger.info("***** Running evaluation *****") #logger.info(" Num examples = %d", len(eval_examples)) logger.info(" Batch size = %d", args.eval_batch_size) # Run prediction for full data if args.local_rank == -1: eval_sampler = SequentialSampler(eval_data) else: eval_sampler = DistributedSampler(eval_data) # Note that this sampler samples randomly eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size) model.eval() eval_loss = 0 nb_eval_steps = 0 preds = [] out_label_ids = None for input_ids, input_mask, segment_ids, label_ids in tqdm(eval_dataloader, desc="Evaluating"): input_ids = input_ids.to(device) input_mask = input_mask.to(device) segment_ids = segment_ids.to(device) label_ids = label_ids.to(device) with torch.no_grad(): logits = model(input_ids, segment_ids, input_mask) tmp_eval_loss = loss_fct(logits.view(-1, num_labels), label_ids.view(-1)) eval_loss += tmp_eval_loss.mean().item() nb_eval_steps += 1 if output_mode == "multi_classification": logits = sig(logits) if len(preds) == 0: preds.append(logits.detach().cpu().numpy()) out_label_ids = label_ids.detach().cpu().numpy() else: preds[0] = np.append( preds[0], logits.detach().cpu().numpy(), axis=0) out_label_ids = np.append( out_label_ids, label_ids.detach().cpu().numpy(), axis=0) eval_loss = eval_loss / nb_eval_steps preds = preds[0] if output_mode == "classification": preds = np.argmax(preds, axis=1) elif output_mode == "regression": preds = np.squeeze(preds) elif output_mode == "multi_classification": preds = preds > .5 result = compute_metrics(task_name, preds, out_label_ids) loss = tr_loss/global_step if args.do_train else None result['eval_loss'] = eval_loss result['global_step'] = global_step result['loss'] = loss output_eval_file = os.path.join(args.output_dir, "eval_results_final.txt") with open(output_eval_file, "w") as writer: logger.info("***** Eval results *****") for key in sorted(result.keys()): logger.info(" %s = %s", key, str(result[key])) writer.write("%s = %s\n" % (key, str(result[key])))
def main(): parser = setup_parser() args = parser.parse_args() processors = { 'stsb': StsbProcessor, 'mednli': MednliProcessor, 'medsts': MedstsProcessor } output_modes = { 'mnli': 'classification', 'stsb': 'regression', 'mednli': 'classification', 'medsts': 'regression' } bert_types = { 'discharge': '/home/dc925/project/data/clinicalbert/biobert_pretrain_output_disch_100000', 'all': '/home/dc925/project/data/clinicalbert/biobert_pretrain_output_all_notes_150000', 'base_uncased': 'bert-base-uncased', 'base_cased': 'bert-base-cased' } ################################################################################################## ################################### SETUP DATA, DEVICE, MODEL #################################### ################################################################################################## if args.local_rank == -1 or args.no_cuda: device = torch.device('cuda' if torch.cuda.is_available() and not args.no_cuda else 'cpu') n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device('cuda', args.local_rank) n_gpu = 1 #Initialize the distributed backend which will take care of synchronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logger.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_eval: raise ValueError( "At least one of `do_train` or `do_eval` must be True.") if os.path.exists(args.output_dir) and os.listdir( args.output_dir) and args.do_train: raise ValueError( "Output directory ({}) already exists and is not empty.".format( args.output_dir)) if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) task_name = args.task_name.lower() if task_name not in processors: raise ValueError("Task not found: {}".format(task_name)) processor = processors[task_name]() output_mode = output_modes[task_name] label_list = processor.get_labels(output_mode) num_labels = len(label_list) tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case) train_examples = None num_train_optimization_steps = None if args.do_train: train_examples = processor.get_train_examples(args.data_dir) num_train_optimization_steps = int( len(train_examples) / args.train_batch_size / args.gradient_accumulation_steps) * args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) cache_dir = args.cache_dir if args.cache_dir else os.path.join( str(PYTORCH_PRETRAINED_BERT_CACHE), 'distributed_{}'.format( args.local_rank)) model = BertForSequenceClassification.from_pretrained( args.bert_model, cache_dir=cache_dir, num_labels=num_labels) if args.fp16: model.half() model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: # model = torch.nn.DataParallel(model) model = DataParallelModel(model) ################################################################################################## ########################################### OPTIMIZER ############################################ ################################################################################################## if args.do_train: param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] if args.discriminative_finetuning: group1 = ['layer.0', 'layer.1.'] group2 = ['layer.2', 'layer.3'] group3 = ['layer.4', 'layer.5'] group4 = ['layer.6', 'layer.7'] group5 = ['layer.8', 'layer.9'] group6 = ['layer.10', 'layer.11'] group_all = ['layer.0', 'layer.1.', 'layer.2', 'layer.3', 'layer.4', 'layer.5', \ 'layer.6', 'layer.7', 'layer.8', 'layer.9', 'layer.10', 'layer.11'] optimizer_grouped_parameters = [ {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay) and not any(nd in n for nd in group_all)], \ 'weight_decay': 0.01}, {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay) and any(nd in n for nd in group1)], \ 'weight_decay': 0.01, 'lr': args.learning_rate/2.6**5}, {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay) and any(nd in n for nd in group2)], \ 'weight_decay': 0.01, 'lr': args.learning_rate/2.6**4}, {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay) and any(nd in n for nd in group3)], \ 'weight_decay': 0.01, 'lr': args.learning_rate/2.6**3}, {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay) and any(nd in n for nd in group4)], \ 'weight_decay': 0.01, 'lr': args.learning_rate/2.6**2}, {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay) and any(nd in n for nd in group5)], \ 'weight_decay': 0.01, 'lr': args.learning_rate/2.6}, {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay) and any(nd in n for nd in group6)], \ 'weight_decay': 0.01, 'lr': args.learning_rate}, {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay) and not any(nd in n for nd in group_all)], \ 'weight_decay': 0.0}, {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay) and any(nd in n for nd in group1)], \ 'weight_decay': 0.0, 'lr': args.learning_rate/2.6**5}, {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay) and any(nd in n for nd in group2)], \ 'weight_decay': 0.0, 'lr': args.learning_rate/2.6**4}, {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay) and any(nd in n for nd in group3)], \ 'weight_decay': 0.0, 'lr': args.learning_rate/2.6**3}, {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay) and any(nd in n for nd in group4)], \ 'weight_decay': 0.0, 'lr': args.learning_rate/2.6**2}, {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay) and any(nd in n for nd in group5)], \ 'weight_decay': 0.0, 'lr': args.learning_rate/2.6}, {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay) and any(nd in n for nd in group6)], \ 'weight_decay': 0.0, 'lr': args.learning_rate}, ] else: optimizer_grouped_parameters = [{ 'params': [ p for n, p in param_optimizer if not any(nd in n for nd in no_decay) ], 'weight_decay': 0.01 }, { 'params': [ p for n, p in param_optimizer if any(nd in n for nd in no_decay) ], 'weight_decay': 0.0 }] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule( warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) ################################################################################################## ############################################# TRAIN ############################################## ################################################################################################## global_step = 0 nb_tr_steps = 0 tr_loss = 0 if args.do_train: train_features = convert_examples_to_features(train_examples, label_list, args.max_seq_length, tokenizer, output_mode) logger.info("***** Running training *****") logger.info(" Num examples = %d", len(train_examples)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) all_input_ids = torch.tensor([f.input_ids for f in train_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in train_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in train_features], dtype=torch.long) if output_mode == "classification": all_label_ids = torch.tensor([f.label_id for f in train_features], dtype=torch.long) elif output_mode == "regression": all_label_ids = torch.tensor([f.label_id for f in train_features], dtype=torch.float) train_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) if args.do_eval and (args.local_rank == -1 or torch.distributed.get_rank() == 0): eval_examples = processor.get_dev_examples(args.data_dir) eval_features = convert_examples_to_features(eval_examples, label_list, args.max_seq_length, tokenizer, output_mode) logger.info("***** Running evaluation *****") logger.info(" Num examples = %d", len(eval_examples)) logger.info(" Batch size = %d", args.eval_batch_size) all_input_ids = torch.tensor([f.input_ids for f in eval_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in eval_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in eval_features], dtype=torch.long) if output_mode == "classification": all_label_ids = torch.tensor([f.label_id for f in eval_features], dtype=torch.long) elif output_mode == "regression": all_label_ids = torch.tensor([f.label_id for f in eval_features], dtype=torch.float) all_pids = np.array([f.pid for f in eval_features]) eval_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size, drop_last=True) model.train() epoch_metric = {} for _ in trange(int(args.num_train_epochs), desc="Epoch"): tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 for step, batch in enumerate( tqdm(train_dataloader, desc="Iteration")): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, label_ids = batch # define a new function to compute loss values for both output_modes logits = model(input_ids, segment_ids, input_mask, labels=None) if output_mode == "classification": loss_fct = CrossEntropyLoss() loss_fct = DataParallelCriterion(loss_fct) logits = [ logits[i].view(-1, num_labels) for i in range(len(logits)) ] loss = loss_fct(logits, label_ids.view(-1)) elif output_mode == "regression": loss_fct = MSELoss() loss_fct = DataParallelCriterion(loss_fct) logits = [logits[i].view(-1) for i in range(len(logits))] loss = loss_fct(logits, label_ids.view(-1)) if n_gpu > 1: loss = loss.mean() #average on multi-gpu if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: #modify lr with special warm up BERT uses #if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * warmup_linear.get_lr( global_step, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 with torch.no_grad(): model.eval() eval_loss = 0 nb_eval_steps = 0 preds = [] i = 0 for input_ids, input_mask, segment_ids, label_ids in tqdm( eval_dataloader, desc="Evaluating"): input_ids = input_ids.to(device) input_mask = input_mask.to(device) segment_ids = segment_ids.to(device) label_ids = label_ids.to(device) with torch.no_grad(): logits = model(input_ids, segment_ids, input_mask, labels=None) if output_mode == 'classification': # loss_fct = CrossEntropyLoss() # tmp_eval_loss = loss_fct(logits.view(-1, num_labels), label_ids.view(-1)) loss_fct = CrossEntropyLoss() loss_fct = DataParallelCriterion(loss_fct) logits = [ logits[i].view(-1, num_labels) for i in range(len(logits)) ] tmp_eval_loss = loss_fct(logits, label_ids.view(-1)) elif output_mode == 'regression': # loss_fct = MSELoss() # tmp_eval_loss = loss_fct(logits.view(-1), label_ids.view(-1)) loss_fct = MSELoss() loss_fct = DataParallelCriterion(loss_fct) logits = [ logits[i].view(-1) for i in range(len(logits)) ] tmp_eval_loss = loss_fct(logits, label_ids.view(-1)) eval_loss += tmp_eval_loss.mean().item() nb_eval_steps += 1 logits = parallel.gather(logits, target_device='cuda:0') if len(preds) == 0: preds.append(logits.detach().cpu().numpy()) else: preds[0] = np.append(preds[0], logits.detach().cpu().numpy(), axis=0) eval_loss = eval_loss / nb_eval_steps preds = preds[0] if output_mode == 'classification': preds = np.argmax(preds, axis=1) elif output_mode == 'regression': preds = np.squeeze(preds) all_label_ids = all_label_ids[:preds.shape[0]] all_pids = all_pids[:preds.shape[0]] errors = generate_errors(preds, all_label_ids.numpy(), all_pids) result = compute_metrics(task_name, preds, all_label_ids.numpy()) loss = tr_loss / global_step if args.do_train else None result['eval_loss'] = eval_loss result['global_step'] = global_step result['loss'] = loss logger.info('***** Eval Results *****') for key in sorted(result.keys()): logger.info(" %s = %s", key, str(result[key])) epoch_metric[_] = result[ 'pearson'] if output_mode == 'regression' else result['acc'] output_eval_file = os.path.join(args.output_dir, 'eval_results.txt') with open(output_eval_file, 'w') as writer: logger.info('***** Eval Results *****') # for key in sorted(result.keys()): # logger.info(" %s = %s", key, str(result[key])) # writer.write("%s = %s\n" % (key, str(result[key]))) # writer.write("{} {}\n".format("epoch","pearson")) for key in sorted(epoch_metric.keys()): writer.write("{}\t{}\t{}\t{}\n".format(key, str(epoch_metric[key]), args.learning_rate, args.train_batch_size)) errors.to_csv('errors.txt', sep='\t', index=False) ################################################################################################## ########################################## SAVE & RELOAD ######################################### ################################################################################################## if args.do_train: #Save a trained model, config, and tokenizer model_to_save = model.module if hasattr( model, 'module') else model #only save the model itself output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME) output_config_file = os.path.join(args.output_dir, CONFIG_NAME) torch.save(model_to_save.state_dict(), output_model_file) model_to_save.config.to_json_file(output_config_file) tokenizer.save_vocabulary(args.output_dir) model = BertForSequenceClassification.from_pretrained( args.output_dir, num_labels=num_labels) tokenizer = BertTokenizer.from_pretrained( args.output_dir, do_lower_case=args.do_lower_case) else: model = BertForSequenceClassification.from_pretrained( args.bert_model, num_labels=num_labels) model.to(device)
def main(): parser = argparse.ArgumentParser() ## Required parameters parser.add_argument("--bert_model", default=None, type=str, required=True, help="Bert pre-trained model selected in the list: bert-base-uncased, " "bert-large-uncased, bert-base-cased, bert-large-cased, bert-base-multilingual-uncased, " "bert-base-multilingual-cased, bert-base-chinese.") parser.add_argument("--output_dir", default=None, type=str, required=True, help="The output directory where the model checkpoints and predictions will be written.") ## Other parameters parser.add_argument("--train_file", default=None, type=str, help="SQuAD json for training. E.g., train-v1.1.json") parser.add_argument("--predict_file", default=None, type=str, help="SQuAD json for predictions. E.g., dev-v1.1.json or test-v1.1.json") parser.add_argument("--max_seq_length", default=384, type=int, help="The maximum total input sequence length after WordPiece tokenization. Sequences " "longer than this will be truncated, and sequences shorter than this will be padded.") parser.add_argument("--doc_stride", default=128, type=int, help="When splitting up a long document into chunks, how much stride to take between chunks.") parser.add_argument("--max_query_length", default=64, type=int, help="The maximum number of tokens for the question. Questions longer than this will " "be truncated to this length.") parser.add_argument("--do_train", action='store_true', help="Whether to run training.") parser.add_argument("--do_predict", action='store_true', help="Whether to run eval on the dev set.") parser.add_argument("--train_batch_size", default=32, type=int, help="Total batch size for training.") parser.add_argument("--predict_batch_size", default=8, type=int, help="Total batch size for predictions.") parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.") parser.add_argument("--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform.") parser.add_argument("--warmup_proportion", default=0.1, type=float, help="Proportion of training to perform linear learning rate warmup for. E.g., 0.1 = 10%% " "of training.") parser.add_argument("--n_best_size", default=20, type=int, help="The total number of n-best predictions to generate in the nbest_predictions.json " "output file.") parser.add_argument("--max_answer_length", default=30, type=int, help="The maximum length of an answer that can be generated. This is needed because the start " "and end predictions are not conditioned on one another.") parser.add_argument("--verbose_logging", action='store_true', help="If true, all of the warnings related to data processing will be printed. " "A number of warnings are expected for a normal SQuAD evaluation.") parser.add_argument("--no_cuda", action='store_true', help="Whether not to use CUDA when available") parser.add_argument('--seed', type=int, default=42, help="random seed for initialization") parser.add_argument('--gradient_accumulation_steps', type=int, default=1, help="Number of updates steps to accumulate before performing a backward/update pass.") parser.add_argument("--do_lower_case", action='store_true', help="Whether to lower case the input text. True for uncased models, False for cased models.") parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus") parser.add_argument('--fp16', action='store_true', help="Whether to use 16-bit float precision instead of 32-bit") parser.add_argument('--overwrite_output_dir', action='store_true', help="Overwrite the content of the output directory") parser.add_argument('--loss_scale', type=float, default=0, help="Loss scaling to improve fp16 numeric stability. Only used when fp16 set to True.\n" "0 (default value): dynamic loss scaling.\n" "Positive power of 2: static loss scaling value.\n") parser.add_argument('--version_2_with_negative', action='store_true', help='If true, the SQuAD examples contain some that do not have an answer.') parser.add_argument('--null_score_diff_threshold', type=float, default=0.0, help="If null_score - best_non_null is greater than the threshold predict null.") parser.add_argument('--server_ip', type=str, default='', help="Can be used for distant debugging.") parser.add_argument('--server_port', type=str, default='', help="Can be used for distant debugging.") args = parser.parse_args() print(args) if args.server_ip and args.server_port: # Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script import ptvsd print("Waiting for debugger attach") ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True) ptvsd.wait_for_attach() if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logging.basicConfig(format = '%(asctime)s - %(levelname)s - %(name)s - %(message)s', datefmt = '%m/%d/%Y %H:%M:%S', level = logging.INFO if args.local_rank in [-1, 0] else logging.WARN) logger.info("device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}".format( device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError("Invalid gradient_accumulation_steps parameter: {}, should be >= 1".format( args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_predict: raise ValueError("At least one of `do_train` or `do_predict` must be True.") if args.do_train: if not args.train_file: raise ValueError( "If `do_train` is True, then `train_file` must be specified.") if args.do_predict: if not args.predict_file: raise ValueError( "If `do_predict` is True, then `predict_file` must be specified.") if os.path.exists(args.output_dir) and os.listdir(args.output_dir) and args.do_train and not args.overwrite_output_dir: raise ValueError("Output directory () already exists and is not empty.") if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) if args.local_rank not in [-1, 0]: torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case) model = BertForQuestionAnswering.from_pretrained(args.bert_model) if args.local_rank == 0: torch.distributed.barrier() if args.fp16: model.half() model.to(device) if args.local_rank != -1: model = torch.nn.parallel.DistributedDataParallel(model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True) elif n_gpu > 1: model = torch.nn.DataParallel(model) if args.do_train: if args.local_rank in [-1, 0]: tb_writer = SummaryWriter() # Prepare data loader train_examples = read_squad_examples( input_file=args.train_file, is_training=True, version_2_with_negative=args.version_2_with_negative) cached_train_features_file = args.train_file+'_{0}_{1}_{2}_{3}'.format( list(filter(None, args.bert_model.split('/'))).pop(), str(args.max_seq_length), str(args.doc_stride), str(args.max_query_length)) try: with open(cached_train_features_file, "rb") as reader: train_features = pickle.load(reader) except: train_features = convert_examples_to_features( examples=train_examples, tokenizer=tokenizer, max_seq_length=args.max_seq_length, doc_stride=args.doc_stride, max_query_length=args.max_query_length, is_training=True) if args.local_rank == -1 or torch.distributed.get_rank() == 0: logger.info(" Saving train features into cached file %s", cached_train_features_file) with open(cached_train_features_file, "wb") as writer: pickle.dump(train_features, writer) all_input_ids = torch.tensor([f.input_ids for f in train_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in train_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in train_features], dtype=torch.long) all_start_positions = torch.tensor([f.start_position for f in train_features], dtype=torch.long) all_end_positions = torch.tensor([f.end_position for f in train_features], dtype=torch.long) train_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_start_positions, all_end_positions) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) num_train_optimization_steps = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs # if args.local_rank != -1: # num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size() # Prepare optimizer param_optimizer = list(model.named_parameters()) # hack to remove pooler, which is not used # thus it produce None grad that break apex param_optimizer = [n for n in param_optimizer if 'pooler' not in n[0]] no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [ {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01}, {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0} ] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training.") optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule(warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 logger.info("***** Running training *****") logger.info(" Num orig examples = %d", len(train_examples)) logger.info(" Num split examples = %d", len(train_features)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) model.train() for epoch in trange(int(args.num_train_epochs), desc="Epoch"): for step, batch in enumerate(tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])): if n_gpu == 1: batch = tuple(t.to(device) for t in batch) # multi-gpu does scattering it-self input_ids, input_mask, segment_ids, start_positions, end_positions = batch loss = model(input_ids, segment_ids, input_mask, start_positions, end_positions) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used and handles this automatically lr_this_step = args.learning_rate * warmup_linear.get_lr(global_step, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 if args.local_rank in [-1, 0]: tb_writer.add_scalar('lr', optimizer.get_lr()[0], global_step) tb_writer.add_scalar('loss', loss.item(), global_step) if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0): # Save a trained model, configuration and tokenizer model_to_save = model.module if hasattr(model, 'module') else model # Only save the model it-self # If we save using the predefined names, we can load using `from_pretrained` output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME) output_config_file = os.path.join(args.output_dir, CONFIG_NAME) torch.save(model_to_save.state_dict(), output_model_file) model_to_save.config.to_json_file(output_config_file) tokenizer.save_vocabulary(args.output_dir) # Load a trained model and vocabulary that you have fine-tuned model = BertForQuestionAnswering.from_pretrained(args.output_dir) tokenizer = BertTokenizer.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case) # Good practice: save your training arguments together with the trained model output_args_file = os.path.join(args.output_dir, 'training_args.bin') torch.save(args, output_args_file) else: model = BertForQuestionAnswering.from_pretrained(args.bert_model) model.to(device) if args.do_predict and (args.local_rank == -1 or torch.distributed.get_rank() == 0): eval_examples = read_squad_examples( input_file=args.predict_file, is_training=False, version_2_with_negative=args.version_2_with_negative) eval_features = convert_examples_to_features( examples=eval_examples, tokenizer=tokenizer, max_seq_length=args.max_seq_length, doc_stride=args.doc_stride, max_query_length=args.max_query_length, is_training=False) logger.info("***** Running predictions *****") logger.info(" Num orig examples = %d", len(eval_examples)) logger.info(" Num split examples = %d", len(eval_features)) logger.info(" Batch size = %d", args.predict_batch_size) all_input_ids = torch.tensor([f.input_ids for f in eval_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in eval_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in eval_features], dtype=torch.long) all_example_index = torch.arange(all_input_ids.size(0), dtype=torch.long) eval_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_example_index) # Run prediction for full data eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.predict_batch_size) model.eval() all_results = [] logger.info("Start evaluating") for input_ids, input_mask, segment_ids, example_indices in tqdm(eval_dataloader, desc="Evaluating", disable=args.local_rank not in [-1, 0]): if len(all_results) % 1000 == 0: logger.info("Processing example: %d" % (len(all_results))) input_ids = input_ids.to(device) input_mask = input_mask.to(device) segment_ids = segment_ids.to(device) with torch.no_grad(): batch_start_logits, batch_end_logits = model(input_ids, segment_ids, input_mask) for i, example_index in enumerate(example_indices): start_logits = batch_start_logits[i].detach().cpu().tolist() end_logits = batch_end_logits[i].detach().cpu().tolist() eval_feature = eval_features[example_index.item()] unique_id = int(eval_feature.unique_id) all_results.append(RawResult(unique_id=unique_id, start_logits=start_logits, end_logits=end_logits)) output_prediction_file = os.path.join(args.output_dir, "predictions.json") output_nbest_file = os.path.join(args.output_dir, "nbest_predictions.json") output_null_log_odds_file = os.path.join(args.output_dir, "null_odds.json") write_predictions(eval_examples, eval_features, all_results, args.n_best_size, args.max_answer_length, args.do_lower_case, output_prediction_file, output_nbest_file, output_null_log_odds_file, args.verbose_logging, args.version_2_with_negative, args.null_score_diff_threshold)
from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) scheduler = WarmupLinearSchedule(warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) scheduler = None # get experiment experiment = ExperimentBuilder( network_model=model, experiment_name=args.experiment_name, num_epochs=1, # hard code 1 epoch to ensure runtime limit gpu_id=args.gpu_id, use_gpu=args.use_gpu, device=device,
def main(): parser = argparse.ArgumentParser() ## Required parameters parser.add_argument( "--data_dir", default=None, type=str, required=True, help= "The input data dir. Should contain the .tsv files (or other data files) for the task." ) parser.add_argument( "--bert_model", default=None, type=str, required=True, help="Bert pre-trained model selected in the list: bert-base-uncased, " "bert-large-uncased, bert-base-cased, bert-large-cased, bert-base-multilingual-uncased, " "bert-base-multilingual-cased, bert-base-chinese.") parser.add_argument("--task_name", default=None, type=str, required=True, help="The name of the task to train.") parser.add_argument( "--output_dir", default=None, type=str, required=True, help= "The output directory where the model predictions and checkpoints will be written." ) ## Other parameters parser.add_argument( "--cache_dir", default="", type=str, help= "Where do you want to store the pre-trained models downloaded from s3") parser.add_argument( "--max_seq_length", default=128, type=int, help= "The maximum total input sequence length after WordPiece tokenization. \n" "Sequences longer than this will be truncated, and sequences shorter \n" "than this will be padded.") parser.add_argument("--do_train", action='store_true', help="Whether to run training.") parser.add_argument("--do_eval", action='store_true', help="Whether to run eval on the dev set.") parser.add_argument( "--do_lower_case", action='store_true', help="Set this flag if you are using an uncased model.") parser.add_argument("--train_batch_size", default=32, type=int, help="Total batch size for training.") parser.add_argument("--eval_batch_size", default=8, type=int, help="Total batch size for eval.") parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.") parser.add_argument("--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform.") parser.add_argument( "--warmup_proportion", default=0.1, type=float, help= "Proportion of training to perform linear learning rate warmup for. " "E.g., 0.1 = 10%% of training.") parser.add_argument("--no_cuda", action='store_true', help="Whether not to use CUDA when available") parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus") parser.add_argument('--seed', type=int, default=42, help="random seed for initialization") parser.add_argument( '--gradient_accumulation_steps', type=int, default=1, help= "Number of updates steps to accumulate before performing a backward/update pass." ) parser.add_argument( '--fp16', action='store_true', help="Whether to use 16-bit float precision instead of 32-bit") parser.add_argument( '--loss_scale', type=float, default=0, help= "Loss scaling to improve fp16 numeric stability. Only used when fp16 set to True.\n" "0 (default value): dynamic loss scaling.\n" "Positive power of 2: static loss scaling value.\n") parser.add_argument('--server_ip', type=str, default='', help="Can be used for distant debugging.") parser.add_argument('--server_port', type=str, default='', help="Can be used for distant debugging.") args = parser.parse_args() if args.server_ip and args.server_port: # Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script import ptvsd print("Waiting for debugger attach") ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True) ptvsd.wait_for_attach() processors = { "cola": ColaProcessor, "mnli": MnliProcessor, "mnli-mm": MnliMismatchedProcessor, "mrpc": MrpcProcessor, "sst-2": Sst2Processor, "sts-b": StsbProcessor, "qqp": QqpProcessor, "qnli": QnliProcessor, "rte": RteProcessor, "wnli": WnliProcessor, } output_modes = { "cola": "classification", "mnli": "classification", "mrpc": "classification", "sst-2": "classification", "sts-b": "regression", "qqp": "classification", "qnli": "classification", "rte": "classification", "wnli": "classification", } if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logging.basicConfig( format='%(asctime)s - %(levelname)s - %(name)s - %(message)s', datefmt='%m/%d/%Y %H:%M:%S', level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN) logger.info( "device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}". format(device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError( "Invalid gradient_accumulation_steps parameter: {}, should be >= 1" .format(args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if n_gpu > 0: torch.cuda.manual_seed_all(args.seed) if not args.do_train and not args.do_eval: raise ValueError( "At least one of `do_train` or `do_eval` must be True.") if os.path.exists(args.output_dir) and os.listdir( args.output_dir) and args.do_train: raise ValueError( "Output directory ({}) already exists and is not empty.".format( args.output_dir)) if not os.path.exists(args.output_dir): os.makedirs(args.output_dir) task_name = args.task_name.lower() if task_name not in processors: raise ValueError("Task not found: %s" % (task_name)) processor = processors[task_name]() output_mode = output_modes[task_name] label_list = processor.get_labels() num_labels = len(label_list) tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case) train_examples = None num_train_optimization_steps = None if args.do_train: train_examples = processor.get_train_examples(args.data_dir) num_train_optimization_steps = int( len(train_examples) / args.train_batch_size / args.gradient_accumulation_steps) * args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size( ) # Prepare model cache_dir = args.cache_dir if args.cache_dir else os.path.join( str(PYTORCH_PRETRAINED_BERT_CACHE), 'distributed_{}'.format( args.local_rank)) model = BertForSequenceClassification.from_pretrained( args.bert_model, cache_dir=cache_dir, num_labels=num_labels) if args.fp16: model.half() model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) model = DDP(model) elif n_gpu > 1: model = torch.nn.DataParallel(model) # Prepare optimizer param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [{ 'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01 }, { 'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0 }] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training." ) optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule( warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 nb_tr_steps = 0 tr_loss = 0 if args.do_train: train_features = convert_examples_to_features(train_examples, label_list, args.max_seq_length, tokenizer, output_mode) logger.info("***** Running training *****") logger.info(" Num examples = %d", len(train_examples)) logger.info(" Batch size = %d", args.train_batch_size) logger.info(" Num steps = %d", num_train_optimization_steps) all_input_ids = torch.tensor([f.input_ids for f in train_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in train_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in train_features], dtype=torch.long) if output_mode == "classification": all_label_ids = torch.tensor([f.label_id for f in train_features], dtype=torch.long) elif output_mode == "regression": all_label_ids = torch.tensor([f.label_id for f in train_features], dtype=torch.float) train_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) if args.local_rank == -1: train_sampler = RandomSampler(train_data) else: train_sampler = DistributedSampler(train_data) train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size) model.train() for _ in trange(int(args.num_train_epochs), desc="Epoch"): tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 for step, batch in enumerate( tqdm(train_dataloader, desc="Iteration")): batch = tuple(t.to(device) for t in batch) input_ids, input_mask, segment_ids, label_ids = batch # define a new function to compute loss values for both output_modes logits = model(input_ids, segment_ids, input_mask, labels=None) if output_mode == "classification": loss_fct = CrossEntropyLoss() loss = loss_fct(logits.view(-1, num_labels), label_ids.view(-1)) elif output_mode == "regression": loss_fct = MSELoss() loss = loss_fct(logits.view(-1), label_ids.view(-1)) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * warmup_linear.get_lr( global_step / num_train_optimization_steps, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0): # Save a trained model, configuration and tokenizer model_to_save = model.module if hasattr( model, 'module') else model # Only save the model it-self # If we save using the predefined names, we can load using `from_pretrained` output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME) output_config_file = os.path.join(args.output_dir, CONFIG_NAME) torch.save(model_to_save.state_dict(), output_model_file) model_to_save.config.to_json_file(output_config_file) tokenizer.save_vocabulary(args.output_dir) # Load a trained model and vocabulary that you have fine-tuned model = BertForSequenceClassification.from_pretrained( args.output_dir, num_labels=num_labels) tokenizer = BertTokenizer.from_pretrained( args.output_dir, do_lower_case=args.do_lower_case) else: model = BertForSequenceClassification.from_pretrained( args.bert_model, num_labels=num_labels) model.to(device) if args.do_eval and (args.local_rank == -1 or torch.distributed.get_rank() == 0): eval_examples = processor.get_dev_examples(args.data_dir) eval_features = convert_examples_to_features(eval_examples, label_list, args.max_seq_length, tokenizer, output_mode) logger.info("***** Running evaluation *****") logger.info(" Num examples = %d", len(eval_examples)) logger.info(" Batch size = %d", args.eval_batch_size) all_input_ids = torch.tensor([f.input_ids for f in eval_features], dtype=torch.long) all_input_mask = torch.tensor([f.input_mask for f in eval_features], dtype=torch.long) all_segment_ids = torch.tensor([f.segment_ids for f in eval_features], dtype=torch.long) if output_mode == "classification": all_label_ids = torch.tensor([f.label_id for f in eval_features], dtype=torch.long) elif output_mode == "regression": all_label_ids = torch.tensor([f.label_id for f in eval_features], dtype=torch.float) eval_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) # Run prediction for full data eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size) model.eval() eval_loss = 0 nb_eval_steps = 0 preds = [] for input_ids, input_mask, segment_ids, label_ids in tqdm( eval_dataloader, desc="Evaluating"): input_ids = input_ids.to(device) input_mask = input_mask.to(device) segment_ids = segment_ids.to(device) label_ids = label_ids.to(device) with torch.no_grad(): logits = model(input_ids, segment_ids, input_mask, labels=None) # create eval loss and other metric required by the task if output_mode == "classification": loss_fct = CrossEntropyLoss() tmp_eval_loss = loss_fct(logits.view(-1, num_labels), label_ids.view(-1)) elif output_mode == "regression": loss_fct = MSELoss() tmp_eval_loss = loss_fct(logits.view(-1), label_ids.view(-1)) eval_loss += tmp_eval_loss.mean().item() nb_eval_steps += 1 if len(preds) == 0: preds.append(logits.detach().cpu().numpy()) else: preds[0] = np.append(preds[0], logits.detach().cpu().numpy(), axis=0) eval_loss = eval_loss / nb_eval_steps preds = preds[0] if output_mode == "classification": preds = np.argmax(preds, axis=1) elif output_mode == "regression": preds = np.squeeze(preds) result = compute_metrics(task_name, preds, all_label_ids.numpy()) loss = tr_loss / global_step if args.do_train else None result['eval_loss'] = eval_loss result['global_step'] = global_step result['loss'] = loss output_eval_file = os.path.join(args.output_dir, "eval_results.txt") with open(output_eval_file, "w") as writer: logger.info("***** Eval results *****") for key in sorted(result.keys()): logger.info(" %s = %s", key, str(result[key])) writer.write("%s = %s\n" % (key, str(result[key]))) # hack for MNLI-MM if task_name == "mnli": task_name = "mnli-mm" processor = processors[task_name]() if os.path.exists(args.output_dir + '-MM') and os.listdir(args.output_dir + '-MM') and args.do_train: raise ValueError( "Output directory ({}) already exists and is not empty.". format(args.output_dir)) if not os.path.exists(args.output_dir + '-MM'): os.makedirs(args.output_dir + '-MM') eval_examples = processor.get_dev_examples(args.data_dir) eval_features = convert_examples_to_features( eval_examples, label_list, args.max_seq_length, tokenizer, output_mode) logger.info("***** Running evaluation *****") logger.info(" Num examples = %d", len(eval_examples)) logger.info(" Batch size = %d", args.eval_batch_size) all_input_ids = torch.tensor([f.input_ids for f in eval_features], dtype=torch.long) all_input_mask = torch.tensor( [f.input_mask for f in eval_features], dtype=torch.long) all_segment_ids = torch.tensor( [f.segment_ids for f in eval_features], dtype=torch.long) all_label_ids = torch.tensor([f.label_id for f in eval_features], dtype=torch.long) eval_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label_ids) # Run prediction for full data eval_sampler = SequentialSampler(eval_data) eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size) model.eval() eval_loss = 0 nb_eval_steps = 0 preds = [] for input_ids, input_mask, segment_ids, label_ids in tqdm( eval_dataloader, desc="Evaluating"): input_ids = input_ids.to(device) input_mask = input_mask.to(device) segment_ids = segment_ids.to(device) label_ids = label_ids.to(device) with torch.no_grad(): logits = model(input_ids, segment_ids, input_mask, labels=None) loss_fct = CrossEntropyLoss() tmp_eval_loss = loss_fct(logits.view(-1, num_labels), label_ids.view(-1)) eval_loss += tmp_eval_loss.mean().item() nb_eval_steps += 1 if len(preds) == 0: preds.append(logits.detach().cpu().numpy()) else: preds[0] = np.append(preds[0], logits.detach().cpu().numpy(), axis=0) eval_loss = eval_loss / nb_eval_steps preds = preds[0] preds = np.argmax(preds, axis=1) result = compute_metrics(task_name, preds, all_label_ids.numpy()) loss = tr_loss / global_step if args.do_train else None result['eval_loss'] = eval_loss result['global_step'] = global_step result['loss'] = loss output_eval_file = os.path.join(args.output_dir + '-MM', "eval_results.txt") with open(output_eval_file, "w") as writer: logger.info("***** Eval results *****") for key in sorted(result.keys()): logger.info(" %s = %s", key, str(result[key])) writer.write("%s = %s\n" % (key, str(result[key])))
def train(args): if args.use_bert and args.use_zen: raise ValueError('We cannot use both BERT and ZEN') if not os.path.exists('./logs'): os.mkdir('logs') now_time = datetime.datetime.now().strftime('%Y-%m-%d-%H-%M-%S') log_file_name = './logs/log-' + now_time logging.basicConfig(format='%(asctime)s - %(levelname)s - %(name)s - %(message)s', datefmt='%m/%d/%Y %H:%M:%S', filename=log_file_name, filemode='w', level=logging.INFO) logger = logging.getLogger(__name__) console_handler = logging.StreamHandler() logger.addHandler(console_handler) logger = logging.getLogger(__name__) logger.info(vars(args)) if args.server_ip and args.server_port: # Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script import ptvsd print("Waiting for debugger attach") ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True) ptvsd.wait_for_attach() if args.local_rank == -1 or args.no_cuda: device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu") n_gpu = torch.cuda.device_count() else: torch.cuda.set_device(args.local_rank) device = torch.device("cuda", args.local_rank) n_gpu = 1 # Initializes the distributed backend which will take care of sychronizing nodes/GPUs torch.distributed.init_process_group(backend='nccl') logger.info("device: {} n_gpu: {}, distributed training: {}, 16-bits training: {}".format( device, n_gpu, bool(args.local_rank != -1), args.fp16)) if args.gradient_accumulation_steps < 1: raise ValueError("Invalid gradient_accumulation_steps parameter: {}, should be >= 1".format( args.gradient_accumulation_steps)) args.train_batch_size = args.train_batch_size // args.gradient_accumulation_steps random.seed(args.seed) np.random.seed(args.seed) torch.manual_seed(args.seed) if not os.path.exists('./models'): os.mkdir('./models') if args.model_name is None: raise Warning('model name is not specified, the model will NOT be saved!') else: output_model_dir = os.path.join('./models', args.model_name + '_' + now_time) label_map = getlabels(args.train_data_path) id2label = {v: k for k, v in label_map.items()} id2label[0] = 'O' word2id = get_word2id(args.train_data_path) if args.use_attention: if args.source == 'stanford': request_features_from_stanford(args.train_data_path) request_features_from_stanford(args.eval_data_path) processor = stanford_feature_processor() elif args.source == 'berkeley': request_features_from_berkeley(args.train_data_path) request_features_from_berkeley(args.eval_data_path) processor = berkeley_feature_processor() else: raise ValueError('Source must be one of \'stanford\' or \'berkeley\' if attentions are used.') gram2id, feature2id = get_feature2id(args.train_data_path, processor, args.feature_flag, args.feature_threshold) else: processor = None gram2id = None feature2id = None hpara = TwASP.init_hyper_parameters(args) joint_model = TwASP(word2id, gram2id, feature2id, label_map, processor, hpara, args) train_examples = joint_model.load_data(args.train_data_path) eval_examples = joint_model.load_data(args.eval_data_path) num_labels = joint_model.num_labels convert_examples_to_features = joint_model.convert_examples_to_features feature2input = joint_model.feature2input total_params = sum(p.numel() for p in joint_model.parameters() if p.requires_grad) logger.info('# of trainable parameters: %d' % total_params) num_train_optimization_steps = int( len(train_examples) / args.train_batch_size / args.gradient_accumulation_steps) * args.num_train_epochs if args.local_rank != -1: num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size() if args.fp16: joint_model.half() joint_model.to(device) if args.local_rank != -1: try: from apex.parallel import DistributedDataParallel as DDP except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training.") joint_model = DDP(joint_model) elif n_gpu > 1: joint_model = torch.nn.DataParallel(joint_model) param_optimizer = list(joint_model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [ {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01}, {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0} ] if args.fp16: try: from apex.optimizers import FP16_Optimizer from apex.optimizers import FusedAdam except ImportError: raise ImportError( "Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training.") optimizer = FusedAdam(optimizer_grouped_parameters, lr=args.learning_rate, bias_correction=False, max_grad_norm=1.0) if args.loss_scale == 0: optimizer = FP16_Optimizer(optimizer, dynamic_loss_scale=True) else: optimizer = FP16_Optimizer(optimizer, static_loss_scale=args.loss_scale) warmup_linear = WarmupLinearSchedule(warmup=args.warmup_proportion, t_total=num_train_optimization_steps) else: # num_train_optimization_steps=-1 optimizer = BertAdam(optimizer_grouped_parameters, lr=args.learning_rate, warmup=args.warmup_proportion, t_total=num_train_optimization_steps) global_step = 0 best_epoch = -1 best_wp = -1 best_wr = -1 best_wf = -1 best_woov = -1 best_pp = -1 best_pr = -1 best_pf = -1 best_poov = -1 history = {'epoch': [], 'word_p': [], 'word_r': [], 'word_f': [], 'word_oov': [], 'pos_p': [], 'pos_r': [], 'pos_f': [], 'pos_oov': []} num_of_no_improvement = 0 patient = args.patient if args.do_train: for epoch in trange(int(args.num_train_epochs), desc="Epoch"): np.random.shuffle(train_examples) joint_model.train() tr_loss = 0 nb_tr_examples, nb_tr_steps = 0, 0 for step, start_index in enumerate(tqdm(range(0, len(train_examples), args.train_batch_size))): batch_examples = train_examples[start_index: min(start_index + args.train_batch_size, len(train_examples))] if len(batch_examples) == 0: continue train_features = convert_examples_to_features(batch_examples) feature_ids, input_ids, input_mask, l_mask, label_ids, ngram_ids, ngram_positions, \ segment_ids, valid_ids, word_ids, word_matching_matrix = feature2input(device, train_features) loss, _ = joint_model(input_ids, segment_ids, input_mask, label_ids, valid_ids, l_mask, word_ids, feature_ids, word_matching_matrix, word_matching_matrix, ngram_ids, ngram_positions) if n_gpu > 1: loss = loss.mean() # mean() to average on multi-gpu. if args.gradient_accumulation_steps > 1: loss = loss / args.gradient_accumulation_steps if args.fp16: optimizer.backward(loss) else: loss.backward() tr_loss += loss.item() nb_tr_examples += input_ids.size(0) nb_tr_steps += 1 if (step + 1) % args.gradient_accumulation_steps == 0: if args.fp16: # modify learning rate with special warm up BERT uses # if args.fp16 is False, BertAdam is used that handles this automatically lr_this_step = args.learning_rate * warmup_linear(global_step / num_train_optimization_steps, args.warmup_proportion) for param_group in optimizer.param_groups: param_group['lr'] = lr_this_step optimizer.step() optimizer.zero_grad() global_step += 1 joint_model.to(device) if args.local_rank == -1 or torch.distributed.get_rank() == 0: joint_model.eval() eval_loss, eval_accuracy = 0, 0 nb_eval_steps, nb_eval_examples = 0, 0 y_true = [] y_pred = [] for start_index in range(0, len(eval_examples), args.eval_batch_size): eval_batch_examples = eval_examples[start_index: min(start_index + args.eval_batch_size, len(eval_examples))] eval_features = convert_examples_to_features(eval_batch_examples) feature_ids, input_ids, input_mask, l_mask, label_ids, ngram_ids, ngram_positions, \ segment_ids, valid_ids, word_ids, word_matching_matrix = feature2input(device, eval_features) with torch.no_grad(): _, tag_seq = joint_model(input_ids, segment_ids, input_mask, label_ids, valid_ids, l_mask, word_ids, feature_ids, word_matching_matrix, word_matching_matrix, ngram_ids, ngram_positions) # logits = torch.argmax(F.log_softmax(logits, dim=2),dim=2) # logits = logits.detach().cpu().numpy() logits = tag_seq.to('cpu').numpy() label_ids = label_ids.to('cpu').numpy() input_mask = input_mask.to('cpu').numpy() for i, label in enumerate(label_ids): temp_1 = [] temp_2 = [] for j, m in enumerate(label): if j == 0: continue elif label_ids[i][j] == num_labels - 1: y_true.append(temp_1) y_pred.append(temp_2) break else: temp_1.append(id2label[label_ids[i][j]]) temp_2.append(id2label[logits[i][j]]) y_true_all = [] y_pred_all = [] sentence_all = [] for y_true_item in y_true: y_true_all += y_true_item for y_pred_item in y_pred: y_pred_all += y_pred_item for example, y_true_item in zip(eval_examples, y_true): sen = example.text_a sen = sen.strip() sen = sen.split(' ') if len(y_true_item) != len(sen): print(len(sen)) sen = sen[:len(y_true_item)] sentence_all.append(sen) (wp, wr, wf), (pp, pr, pf) = pos_evaluate_word_PRF(y_pred_all, y_true_all) woov, poov = pos_evaluate_OOV(y_pred, y_true, sentence_all, word2id) history['epoch'].append(epoch) history['word_p'].append(wp) history['word_r'].append(wr) history['word_f'].append(wf) history['word_oov'].append(woov) history['pos_p'].append(pp) history['pos_r'].append(pr) history['pos_f'].append(pf) history['pos_oov'].append(poov) logger.info("=======entity level========") logger.info("Epoch: %d, word P: %f, word R: %f, word F: %f, word OOV: %f", epoch + 1, wp, wr, wf, woov) logger.info("Epoch: %d, pos P: %f, pos R: %f, pos F: %f, pos OOV: %f", epoch + 1, pp, pr, pf, poov) logger.info("=======entity level========") # the evaluation method of NER report = classification_report(y_true, y_pred, digits=4) if args.model_name is not None: if not os.path.exists(output_model_dir): os.mkdir(output_model_dir) if pf > best_pf: best_epoch = epoch + 1 best_wp = wp best_wr = wr best_wf = wf best_woov = woov best_pp = pp best_pr = pr best_pf = pf best_poov = poov num_of_no_improvement = 0 if args.model_name: output_model_dir = path.join('./models', args.model_name + '_' + now_time) if not os.path.exists(output_model_dir): os.mkdir(output_model_dir) with open(os.path.join(output_model_dir, 'POS_result.txt'), "w") as writer: writer.write("Epoch: %d, word P: %f, word R: %f, word F: %f, word OOV: %f" % (epoch + 1, wp, wr, wf, woov)) writer.write("Epoch: %d, pos P: %f, pos R: %f, pos F: %f, pos OOV: %f" % (epoch + 1, pp, pr, pf, poov)) for i in range(len(y_pred)): sentence = eval_examples[i].text_a seg_true_str, seg_pred_str = eval_sentence(y_pred[i], y_true[i], sentence, word2id) writer.write('True: %s\n' % seg_true_str) writer.write('Pred: %s\n\n' % seg_pred_str) best_eval_model_path = os.path.join(output_model_dir, 'model.pt') if n_gpu > 1: torch.save({ 'spec': joint_model.module.spec, 'state_dict': joint_model.module.state_dict(), # 'trainer': optimizer.state_dict(), }, best_eval_model_path) else: torch.save({ 'spec': joint_model.spec, 'state_dict': joint_model.state_dict(), # 'trainer': optimizer.state_dict(), }, best_eval_model_path) else: num_of_no_improvement += 1 if num_of_no_improvement >= patient: logger.info('\nEarly stop triggered at epoch %d\n' % epoch) break logger.info("\n=======best f entity level========") logger.info("Epoch: %d, word P: %f, word R: %f, word F: %f, word OOV: %f", best_epoch, best_wp, best_wr, best_wf, best_woov) logger.info("Epoch: %d, pos P: %f, pos R: %f, pos F: %f, pos OOV: %f", best_epoch, best_pp, best_pr, best_pf, best_poov) logger.info("\n=======best f entity level========") if args.model_name is not None: with open(os.path.join(output_model_dir, 'history.json'), 'w', encoding='utf8') as f: json.dump(history, f) f.write('\n')