def validateAndReturnErrors(cls, choices):
'''
Should validate the selected input parameters. If the parameters are
not valid, an error text explaining the problem should be returned. The
GUI then shows this text to the user (if not empty) and greys out the
execute button (even if the text is empty). If all parameters are
valid, the method should return None, which enables the execute button.
'''
errorString = GeneralGuiTool._checkGSuiteFile(choices.gsuite)
if errorString:
return errorString
gSuite = getGSuiteFromGalaxyTN(choices.gsuite)
errorString = GeneralGuiTool._checkGSuiteRequirements(
gSuite,
allowedLocations=cls.GSUITE_ALLOWED_LOCATIONS,
allowedFileFormats=cls.GSUITE_ALLOWED_FILE_TYPES,
allowedTrackTypes=cls.GSUITE_ALLOWED_TRACK_TYPES)
if errorString:
return errorString
if choices.genome:
errorString = cls.validateUserBins(choices)
if errorString:
return errorString
return None
def validateAndReturnErrors(cls, choices):
'''
Should validate the selected input parameters. If the parameters are not
valid, an error text explaining the problem should be returned. The GUI
then shows this text to the user (if not empty) and greys out the
execute button (even if the text is empty). If all parameters are valid,
the method should return None, which enables the execute button.
'''
from quick.multitrack.MultiTrackCommon import getGSuiteFromGalaxyTN
errorString = GeneralGuiTool._checkGSuiteFile(choices.history)
if errorString:
return errorString
gSuite = getGSuiteFromGalaxyTN(choices.history)
errorString = cls._validateGenome(choices)
if errorString:
return errorString
errorString = GeneralGuiTool._checkGSuiteRequirements(
gSuite, allowedLocations=cls.GSUITE_ALLOWED_LOCATIONS)
if errorString:
return errorString
errorString = GeneralGuiTool._checkGSuiteTrackListSize(gSuite,
minSize=1)
if errorString:
return errorString
def validateAndReturnErrors(cls, choices):
errorString = GeneralGuiTool._checkGSuiteFile(choices.gsuite)
if errorString:
return errorString
gSuite = getGSuiteFromGalaxyTN(choices.gsuite)
errorString = GeneralGuiTool._checkGSuiteRequirements(
gSuite,
allowedLocations=cls.GSUITE_ALLOWED_LOCATIONS,
allowedFileFormats=cls.GSUITE_ALLOWED_FILE_FORMATS,
allowedTrackTypes=cls.GSUITE_ALLOWED_TRACK_TYPES)
if errorString:
return errorString
def validateGSuite(cls, choices):
errorString = cls._checkGSuiteFile(choices.gSuite)
if errorString:
return errorString
gSuite = getGSuiteFromGalaxyTN(choices.gSuite)
errorString = GeneralGuiTool._checkGSuiteRequirements(
gSuite,
allowedLocations=CommonClusteringFunctions.GSUITE_ALLOWED_LOCATIONS,
allowedFileFormats=CommonClusteringFunctions.GSUITE_ALLOWED_FILE_FORMATS,
allowedTrackTypes=CommonClusteringFunctions.GSUITE_ALLOWED_TRACK_TYPES)
if errorString:
return errorString
errorString = GeneralGuiTool._checkGSuiteTrackListSize(gSuite, 2)
if errorString:
return errorString
