def setUp(self):
super().setUp()
self.data_viewset = DataViewSet.as_view(actions={
'get': 'list',
'post': 'create',
})
self.duplicate_viewset = DataViewSet.as_view(actions={
'post': 'duplicate',
})
self.data_detail_viewset = DataViewSet.as_view(
actions={
'get': 'retrieve',
'patch': 'partial_update',
})
self.parents_viewset = DataViewSet.as_view(actions={
'get': 'parents',
})
self.children_viewset = DataViewSet.as_view(actions={
'get': 'children',
})
self.collection = Collection.objects.create(
contributor=self.contributor)
self.proc = Process.objects.create(
type='data:test:process',
slug='test-process',
version='1.0.0',
contributor=self.contributor,
entity_type='test-schema',
entity_descriptor_schema='test-schema',
input_schema=[{
'name': 'input_data',
'type': 'data:test:',
'required': False
}],
)
self.descriptor_schema = DescriptorSchema.objects.create(
slug='test-schema',
version='1.0.0',
contributor=self.contributor,
)
assign_perm('view_collection', self.contributor, self.collection)
assign_perm('add_collection', self.contributor, self.collection)
assign_perm('view_process', self.contributor, self.proc)
assign_perm('view_descriptorschema', self.contributor,
self.descriptor_schema)
def setUp(self):
super().setUp()
self.data_viewset = DataViewSet.as_view(actions={
"get": "list",
"post": "create",
})
self.duplicate_viewset = DataViewSet.as_view(actions={
"post": "duplicate",
})
self.data_detail_viewset = DataViewSet.as_view(
actions={
"get": "retrieve",
"patch": "partial_update",
})
self.parents_viewset = DataViewSet.as_view(actions={
"get": "parents",
})
self.children_viewset = DataViewSet.as_view(actions={
"get": "children",
})
self.collection = Collection.objects.create(
contributor=self.contributor)
self.proc = Process.objects.create(
type="data:test:process",
slug="test-process",
version="1.0.0",
contributor=self.contributor,
entity_type="test-schema",
entity_descriptor_schema="test-schema",
input_schema=[{
"name": "input_data",
"type": "data:test:",
"required": False
}],
)
self.descriptor_schema = DescriptorSchema.objects.create(
slug="test-schema",
version="1.0.0",
contributor=self.contributor,
)
assign_perm("view_collection", self.contributor, self.collection)
assign_perm("edit_collection", self.contributor, self.collection)
assign_perm("view_process", self.contributor, self.proc)
assign_perm("view_descriptorschema", self.contributor,
self.descriptor_schema)
def setUp(self):
super(TestDataViewSetCase, self).setUp()
self.data_viewset = DataViewSet.as_view(actions={
'get': 'list',
'post': 'create',
})
self.proc = Process.objects.create(
type='test:process',
name='Test process',
slug='test-process',
version='1.0.0',
contributor=self.contributor,
)
self.descriptor_schema = DescriptorSchema.objects.create(
name='Test schema',
slug='test-schema',
version='1.0.0',
contributor=self.contributor,
)
assign_perm('view_process', self.user, self.proc)
assign_perm('view_descriptorschema', self.user, self.descriptor_schema)
def setUp(self):
super(TestDataViewSetCase, self).setUp()
self.data_viewset = DataViewSet.as_view(actions={
'get': 'list',
'post': 'create',
})
self.collection = Collection.objects.create(
contributor=self.contributor)
self.proc = Process.objects.create(
type='data:test:process',
slug='test-process',
version='1.0.0',
contributor=self.contributor,
flow_collection='test-schema',
input_schema=[{
'name': 'input_data',
'type': 'data:test:',
'required': False
}],
)
self.descriptor_schema = DescriptorSchema.objects.create(
slug='test-schema',
version='1.0.0',
contributor=self.contributor,
)
assign_perm('view_collection', self.contributor, self.collection)
assign_perm('add_collection', self.contributor, self.collection)
assign_perm('view_process', self.contributor, self.proc)
assign_perm('view_descriptorschema', self.contributor,
self.descriptor_schema)
def setUp(self):
super().setUp()
self.entity = Entity.objects.create(name="Test entity",
contributor=self.contributor)
process = Process.objects.create(
name="Test process",
contributor=self.contributor,
output_schema=[
{
"name":
"foo",
"label":
"Foo",
"group": [
{
"name": "bar",
"label": "Bar",
"type": "basic:integer:"
},
{
"name": "hello",
"label": "Hello",
"type": "basic:string:"
},
],
},
{
"name": "another",
"label": "Another",
"type": "basic:integer:"
},
],
)
data_output = {
"foo": {
"bar": 42,
"hello": "world",
},
"another": 3,
}
self.data_output = data_output
self.data = Data.objects.create(
name="Test data",
contributor=self.contributor,
process=process,
output=data_output,
)
self.data_2 = Data.objects.create(
name="Test data 2",
contributor=self.contributor,
process=process,
output=data_output,
)
self.entity.data.add(self.data)
self.entity.data.add(self.data_2)
self.data_viewset = DataViewSet.as_view(actions={"get": "list"})
def setUp(self):
super(TestDataViewSetCase, self).setUp()
self.data_viewset = DataViewSet.as_view(actions={
'get': 'list',
})
self.proc = Process.objects.create(type='test:process',
name='Test process',
contributor=self.contributor)
def setUp(self):
super().setUp()
self.entity = Entity.objects.create(name="Test entity",
contributor=self.contributor)
process = Process.objects.create(name="Test process",
contributor=self.contributor,
output_schema=[
{
'name':
'foo',
'label':
'Foo',
'group': [
{
'name': 'bar',
'label': 'Bar',
'type':
'basic:integer:'
},
{
'name': 'hello',
'label': 'Hello',
'type':
'basic:string:'
},
]
},
{
'name': 'another',
'label': 'Another',
'type': 'basic:integer:'
},
])
data_output = {
'foo': {
'bar': 42,
'hello': 'world',
},
'another': 3,
}
self.data_output = data_output
self.data = Data.objects.create(name="Test data",
contributor=self.contributor,
process=process,
output=data_output)
self.data_2 = Data.objects.create(name="Test data 2",
contributor=self.contributor,
process=process,
output=data_output)
self.entity.data.add(self.data)
self.entity.data.add(self.data_2)
self.data_viewset = DataViewSet.as_view(actions={'get': 'list'})
def setUp(self):
super().setUp()
self.data_viewset = DataViewSet.as_view(actions={
'get': 'list',
'post': 'create',
})
self.duplicate_viewset = DataViewSet.as_view(actions={
'post': 'duplicate',
})
self.data_detail_viewset = DataViewSet.as_view(actions={
'get': 'retrieve',
})
self.collection = Collection.objects.create(contributor=self.contributor)
self.proc = Process.objects.create(
type='data:test:process',
slug='test-process',
version='1.0.0',
contributor=self.contributor,
entity_type='test-schema',
entity_descriptor_schema='test-schema',
input_schema=[{'name': 'input_data', 'type': 'data:test:', 'required': False}],
)
self.descriptor_schema = DescriptorSchema.objects.create(
slug='test-schema',
version='1.0.0',
contributor=self.contributor,
)
assign_perm('view_collection', self.contributor, self.collection)
assign_perm('add_collection', self.contributor, self.collection)
assign_perm('view_process', self.contributor, self.proc)
assign_perm('view_descriptorschema', self.contributor, self.descriptor_schema)
def setUp(self):
super().setUp()
self.data_viewset = DataViewSet.as_view(actions={
'get': 'list',
})
self.proc = Process.objects.create(
type='data:test:process',
slug='test-process',
version='1.0.0',
contributor=self.contributor,
entity_type='test-schema',
entity_descriptor_schema='test-schema',
input_schema=[{'name': 'input_data', 'type': 'data:test:', 'required': False}],
output_schema=[
{'name': 'source', 'type': 'basic:string:'},
{'name': 'species', 'type': 'basic:string:'},
{'name': 'build', 'type': 'basic:string:'},
{'name': 'feature_type', 'type': 'basic:string:'},
]
)
self.descriptor_schema = DescriptorSchema.objects.create(
slug='test-schema',
version='1.0.0',
contributor=self.contributor,
)
self.data = []
for index in range(10):
data = Data.objects.create(
name='Data {}'.format(index),
contributor=self.contributor,
process=self.proc,
status=Data.STATUS_DONE,
output={
'source': 'NCBI{}'.format(index),
'species': 'Mus musculus' if index < 5 else 'H**o sapiens',
'build': 'B{}'.format(index),
'feature_type': 'gene' if index < 5 else 'foo',
}
)
self.data.append(data)
def setUp(self):
super(GetOrCreateTestCase, self).setUp()
user_model = get_user_model()
self.user = user_model.objects.create(username='******',
password='******')
self.process = Process.objects.create(
name='Temporary process',
contributor=self.user,
slug='tmp-process',
persistence=Process.PERSISTENCE_TEMP,
input_schema=[{
'name': 'some_value',
'type': 'basic:integer:',
'default': 42
}],
)
assign_perm('view_process', self.user, self.process)
process_2 = Process.objects.create(
name='Another process',
contributor=self.user,
slug='another-process',
persistence=Process.PERSISTENCE_TEMP,
input_schema=[{
'name': 'some_value',
'type': 'basic:integer:'
}],
)
assign_perm('view_process', self.user, process_2)
self.data = Data.objects.create(name='Temporary data',
contributor=self.user,
process=self.process,
input={'some_value': 42})
assign_perm('view_data', self.user, self.data)
self.get_or_create_view = DataViewSet.as_view(
{'post': 'get_or_create'})
self.factory = APIRequestFactory()
def setUp(self):
user_model = get_user_model()
self.user = user_model.objects.create(username='******', password='******')
self.process = Process.objects.create(
name='Temporary process',
contributor=self.user,
slug='tmp-process',
persistence=Process.PERSISTENCE_TEMP,
input_schema=[
{'name': 'some_value', 'type': 'basic:integer:', 'default': 42}
],
)
assign_perm('view_process', self.user, self.process)
process_2 = Process.objects.create(
name='Another process',
contributor=self.user,
slug='another-process',
persistence=Process.PERSISTENCE_TEMP,
input_schema=[
{'name': 'some_value', 'type': 'basic:integer:'}
],
)
assign_perm('view_process', self.user, process_2)
self.data = Data.objects.create(
name='Temporary data',
contributor=self.user,
process=self.process,
input={'some_value': 42}
)
assign_perm('view_data', self.user, self.data)
self.get_or_create_view = DataViewSet.as_view({'post': 'get_or_create'})
self.factory = APIRequestFactory()
def setUp(self):
super().setUp()
self.data_viewset = DataViewSet.as_view(actions={
'get': 'list',
})
self.collection = Collection.objects.create(
contributor=self.contributor)
self.proc1 = Process.objects.create(
type='data:test:process1:',
name='First process',
slug='test-process-1',
version='1.0.0',
contributor=self.contributor,
flow_collection='test-schema',
input_schema=[{
'name': 'input_data',
'type': 'data:test:',
'required': False
}],
)
self.proc2 = Process.objects.create(
type='data:test:process2:',
name='Second process',
slug='test-process-2',
version='1.0.0',
contributor=self.contributor,
flow_collection='test-schema',
input_schema=[{
'name': 'input_data',
'type': 'data:test:',
'required': False
}],
)
self.descriptor_schema = DescriptorSchema.objects.create(
slug='test-schema',
version='1.0.0',
contributor=self.contributor,
)
self.data = []
for index in range(10):
data = Data.objects.create(
name='Data {}'.format(index),
slug='dataslug-{}'.format(index),
contributor=self.contributor,
process=self.proc1 if index < 5 else self.proc2,
status=Data.STATUS_DONE
if index > 0 else Data.STATUS_RESOLVING,
started=datetime.datetime(2016, 7, 31, index, 0),
finished=datetime.datetime(2016, 7, 31, index, 30),
tags=['foo', 'index{}'.format(index)],
)
data.created = datetime.datetime(2016, 7, 30, index, 59)
data.save()
assign_perm('owner_data', self.admin, data)
if index == 0:
self.collection.data.add(data)
self.data.append(data)
def setUp(self):
super().setUp()
self.viewset = DataViewSet.as_view(actions={
"get": "list",
})
self.proc = Process.objects.create(
type="data:test:process",
slug="test-process",
version="1.0.0",
contributor=self.contributor,
entity_type="test-schema",
entity_descriptor_schema="test-schema",
input_schema=[{
"name": "input_data",
"type": "data:test:",
"required": False
}],
output_schema=[
{
"name": "source",
"type": "basic:string:"
},
{
"name": "species",
"type": "basic:string:"
},
{
"name": "build",
"type": "basic:string:"
},
{
"name": "feature_type",
"type": "basic:string:"
},
],
)
self.descriptor_schema = DescriptorSchema.objects.create(
slug="test-schema",
version="1.0.0",
contributor=self.contributor,
)
self.data = []
for index in range(10):
data = Data.objects.create(
name="Data {}".format(index),
contributor=self.contributor,
process=self.proc,
status=Data.STATUS_DONE,
output={
"source": "NCBI{}".format(index),
"species": "Mus musculus" if index < 5 else "H**o sapiens",
"build": "B{}".format(index),
"feature_type": "gene" if index < 5 else "foo",
},
)
self.data.append(data)
def setUp(self):
self.data_viewset = DataViewSet.as_view(actions={
'get': 'list',
})
self.user = User.objects.create(is_superuser=True)
