def setUp(self): super().setUp() self.data_viewset = DataViewSet.as_view(actions={ 'get': 'list', 'post': 'create', }) self.duplicate_viewset = DataViewSet.as_view(actions={ 'post': 'duplicate', }) self.data_detail_viewset = DataViewSet.as_view( actions={ 'get': 'retrieve', 'patch': 'partial_update', }) self.parents_viewset = DataViewSet.as_view(actions={ 'get': 'parents', }) self.children_viewset = DataViewSet.as_view(actions={ 'get': 'children', }) self.collection = Collection.objects.create( contributor=self.contributor) self.proc = Process.objects.create( type='data:test:process', slug='test-process', version='1.0.0', contributor=self.contributor, entity_type='test-schema', entity_descriptor_schema='test-schema', input_schema=[{ 'name': 'input_data', 'type': 'data:test:', 'required': False }], ) self.descriptor_schema = DescriptorSchema.objects.create( slug='test-schema', version='1.0.0', contributor=self.contributor, ) assign_perm('view_collection', self.contributor, self.collection) assign_perm('add_collection', self.contributor, self.collection) assign_perm('view_process', self.contributor, self.proc) assign_perm('view_descriptorschema', self.contributor, self.descriptor_schema)
def setUp(self): super().setUp() self.data_viewset = DataViewSet.as_view(actions={ "get": "list", "post": "create", }) self.duplicate_viewset = DataViewSet.as_view(actions={ "post": "duplicate", }) self.data_detail_viewset = DataViewSet.as_view( actions={ "get": "retrieve", "patch": "partial_update", }) self.parents_viewset = DataViewSet.as_view(actions={ "get": "parents", }) self.children_viewset = DataViewSet.as_view(actions={ "get": "children", }) self.collection = Collection.objects.create( contributor=self.contributor) self.proc = Process.objects.create( type="data:test:process", slug="test-process", version="1.0.0", contributor=self.contributor, entity_type="test-schema", entity_descriptor_schema="test-schema", input_schema=[{ "name": "input_data", "type": "data:test:", "required": False }], ) self.descriptor_schema = DescriptorSchema.objects.create( slug="test-schema", version="1.0.0", contributor=self.contributor, ) assign_perm("view_collection", self.contributor, self.collection) assign_perm("edit_collection", self.contributor, self.collection) assign_perm("view_process", self.contributor, self.proc) assign_perm("view_descriptorschema", self.contributor, self.descriptor_schema)
def setUp(self): super(TestDataViewSetCase, self).setUp() self.data_viewset = DataViewSet.as_view(actions={ 'get': 'list', 'post': 'create', }) self.proc = Process.objects.create( type='test:process', name='Test process', slug='test-process', version='1.0.0', contributor=self.contributor, ) self.descriptor_schema = DescriptorSchema.objects.create( name='Test schema', slug='test-schema', version='1.0.0', contributor=self.contributor, ) assign_perm('view_process', self.user, self.proc) assign_perm('view_descriptorschema', self.user, self.descriptor_schema)
def setUp(self): super(TestDataViewSetCase, self).setUp() self.data_viewset = DataViewSet.as_view(actions={ 'get': 'list', 'post': 'create', }) self.collection = Collection.objects.create( contributor=self.contributor) self.proc = Process.objects.create( type='data:test:process', slug='test-process', version='1.0.0', contributor=self.contributor, flow_collection='test-schema', input_schema=[{ 'name': 'input_data', 'type': 'data:test:', 'required': False }], ) self.descriptor_schema = DescriptorSchema.objects.create( slug='test-schema', version='1.0.0', contributor=self.contributor, ) assign_perm('view_collection', self.contributor, self.collection) assign_perm('add_collection', self.contributor, self.collection) assign_perm('view_process', self.contributor, self.proc) assign_perm('view_descriptorschema', self.contributor, self.descriptor_schema)
def setUp(self): super().setUp() self.entity = Entity.objects.create(name="Test entity", contributor=self.contributor) process = Process.objects.create( name="Test process", contributor=self.contributor, output_schema=[ { "name": "foo", "label": "Foo", "group": [ { "name": "bar", "label": "Bar", "type": "basic:integer:" }, { "name": "hello", "label": "Hello", "type": "basic:string:" }, ], }, { "name": "another", "label": "Another", "type": "basic:integer:" }, ], ) data_output = { "foo": { "bar": 42, "hello": "world", }, "another": 3, } self.data_output = data_output self.data = Data.objects.create( name="Test data", contributor=self.contributor, process=process, output=data_output, ) self.data_2 = Data.objects.create( name="Test data 2", contributor=self.contributor, process=process, output=data_output, ) self.entity.data.add(self.data) self.entity.data.add(self.data_2) self.data_viewset = DataViewSet.as_view(actions={"get": "list"})
def setUp(self): super(TestDataViewSetCase, self).setUp() self.data_viewset = DataViewSet.as_view(actions={ 'get': 'list', }) self.proc = Process.objects.create(type='test:process', name='Test process', contributor=self.contributor)
def setUp(self): super().setUp() self.entity = Entity.objects.create(name="Test entity", contributor=self.contributor) process = Process.objects.create(name="Test process", contributor=self.contributor, output_schema=[ { 'name': 'foo', 'label': 'Foo', 'group': [ { 'name': 'bar', 'label': 'Bar', 'type': 'basic:integer:' }, { 'name': 'hello', 'label': 'Hello', 'type': 'basic:string:' }, ] }, { 'name': 'another', 'label': 'Another', 'type': 'basic:integer:' }, ]) data_output = { 'foo': { 'bar': 42, 'hello': 'world', }, 'another': 3, } self.data_output = data_output self.data = Data.objects.create(name="Test data", contributor=self.contributor, process=process, output=data_output) self.data_2 = Data.objects.create(name="Test data 2", contributor=self.contributor, process=process, output=data_output) self.entity.data.add(self.data) self.entity.data.add(self.data_2) self.data_viewset = DataViewSet.as_view(actions={'get': 'list'})
def setUp(self): super().setUp() self.data_viewset = DataViewSet.as_view(actions={ 'get': 'list', 'post': 'create', }) self.duplicate_viewset = DataViewSet.as_view(actions={ 'post': 'duplicate', }) self.data_detail_viewset = DataViewSet.as_view(actions={ 'get': 'retrieve', }) self.collection = Collection.objects.create(contributor=self.contributor) self.proc = Process.objects.create( type='data:test:process', slug='test-process', version='1.0.0', contributor=self.contributor, entity_type='test-schema', entity_descriptor_schema='test-schema', input_schema=[{'name': 'input_data', 'type': 'data:test:', 'required': False}], ) self.descriptor_schema = DescriptorSchema.objects.create( slug='test-schema', version='1.0.0', contributor=self.contributor, ) assign_perm('view_collection', self.contributor, self.collection) assign_perm('add_collection', self.contributor, self.collection) assign_perm('view_process', self.contributor, self.proc) assign_perm('view_descriptorschema', self.contributor, self.descriptor_schema)
def setUp(self): super().setUp() self.data_viewset = DataViewSet.as_view(actions={ 'get': 'list', }) self.proc = Process.objects.create( type='data:test:process', slug='test-process', version='1.0.0', contributor=self.contributor, entity_type='test-schema', entity_descriptor_schema='test-schema', input_schema=[{'name': 'input_data', 'type': 'data:test:', 'required': False}], output_schema=[ {'name': 'source', 'type': 'basic:string:'}, {'name': 'species', 'type': 'basic:string:'}, {'name': 'build', 'type': 'basic:string:'}, {'name': 'feature_type', 'type': 'basic:string:'}, ] ) self.descriptor_schema = DescriptorSchema.objects.create( slug='test-schema', version='1.0.0', contributor=self.contributor, ) self.data = [] for index in range(10): data = Data.objects.create( name='Data {}'.format(index), contributor=self.contributor, process=self.proc, status=Data.STATUS_DONE, output={ 'source': 'NCBI{}'.format(index), 'species': 'Mus musculus' if index < 5 else 'H**o sapiens', 'build': 'B{}'.format(index), 'feature_type': 'gene' if index < 5 else 'foo', } ) self.data.append(data)
def setUp(self): super(GetOrCreateTestCase, self).setUp() user_model = get_user_model() self.user = user_model.objects.create(username='******', password='******') self.process = Process.objects.create( name='Temporary process', contributor=self.user, slug='tmp-process', persistence=Process.PERSISTENCE_TEMP, input_schema=[{ 'name': 'some_value', 'type': 'basic:integer:', 'default': 42 }], ) assign_perm('view_process', self.user, self.process) process_2 = Process.objects.create( name='Another process', contributor=self.user, slug='another-process', persistence=Process.PERSISTENCE_TEMP, input_schema=[{ 'name': 'some_value', 'type': 'basic:integer:' }], ) assign_perm('view_process', self.user, process_2) self.data = Data.objects.create(name='Temporary data', contributor=self.user, process=self.process, input={'some_value': 42}) assign_perm('view_data', self.user, self.data) self.get_or_create_view = DataViewSet.as_view( {'post': 'get_or_create'}) self.factory = APIRequestFactory()
def setUp(self): user_model = get_user_model() self.user = user_model.objects.create(username='******', password='******') self.process = Process.objects.create( name='Temporary process', contributor=self.user, slug='tmp-process', persistence=Process.PERSISTENCE_TEMP, input_schema=[ {'name': 'some_value', 'type': 'basic:integer:', 'default': 42} ], ) assign_perm('view_process', self.user, self.process) process_2 = Process.objects.create( name='Another process', contributor=self.user, slug='another-process', persistence=Process.PERSISTENCE_TEMP, input_schema=[ {'name': 'some_value', 'type': 'basic:integer:'} ], ) assign_perm('view_process', self.user, process_2) self.data = Data.objects.create( name='Temporary data', contributor=self.user, process=self.process, input={'some_value': 42} ) assign_perm('view_data', self.user, self.data) self.get_or_create_view = DataViewSet.as_view({'post': 'get_or_create'}) self.factory = APIRequestFactory()
def setUp(self): super().setUp() self.data_viewset = DataViewSet.as_view(actions={ 'get': 'list', }) self.collection = Collection.objects.create( contributor=self.contributor) self.proc1 = Process.objects.create( type='data:test:process1:', name='First process', slug='test-process-1', version='1.0.0', contributor=self.contributor, flow_collection='test-schema', input_schema=[{ 'name': 'input_data', 'type': 'data:test:', 'required': False }], ) self.proc2 = Process.objects.create( type='data:test:process2:', name='Second process', slug='test-process-2', version='1.0.0', contributor=self.contributor, flow_collection='test-schema', input_schema=[{ 'name': 'input_data', 'type': 'data:test:', 'required': False }], ) self.descriptor_schema = DescriptorSchema.objects.create( slug='test-schema', version='1.0.0', contributor=self.contributor, ) self.data = [] for index in range(10): data = Data.objects.create( name='Data {}'.format(index), slug='dataslug-{}'.format(index), contributor=self.contributor, process=self.proc1 if index < 5 else self.proc2, status=Data.STATUS_DONE if index > 0 else Data.STATUS_RESOLVING, started=datetime.datetime(2016, 7, 31, index, 0), finished=datetime.datetime(2016, 7, 31, index, 30), tags=['foo', 'index{}'.format(index)], ) data.created = datetime.datetime(2016, 7, 30, index, 59) data.save() assign_perm('owner_data', self.admin, data) if index == 0: self.collection.data.add(data) self.data.append(data)
def setUp(self): super().setUp() self.viewset = DataViewSet.as_view(actions={ "get": "list", }) self.proc = Process.objects.create( type="data:test:process", slug="test-process", version="1.0.0", contributor=self.contributor, entity_type="test-schema", entity_descriptor_schema="test-schema", input_schema=[{ "name": "input_data", "type": "data:test:", "required": False }], output_schema=[ { "name": "source", "type": "basic:string:" }, { "name": "species", "type": "basic:string:" }, { "name": "build", "type": "basic:string:" }, { "name": "feature_type", "type": "basic:string:" }, ], ) self.descriptor_schema = DescriptorSchema.objects.create( slug="test-schema", version="1.0.0", contributor=self.contributor, ) self.data = [] for index in range(10): data = Data.objects.create( name="Data {}".format(index), contributor=self.contributor, process=self.proc, status=Data.STATUS_DONE, output={ "source": "NCBI{}".format(index), "species": "Mus musculus" if index < 5 else "H**o sapiens", "build": "B{}".format(index), "feature_type": "gene" if index < 5 else "foo", }, ) self.data.append(data)
def setUp(self): self.data_viewset = DataViewSet.as_view(actions={ 'get': 'list', }) self.user = User.objects.create(is_superuser=True)