Python simulate示例

示例#1

文件： master.py 项目： matthewSorensen/roadrunner-python

    def test_things_that_need_simulate(self):
        covers(["simulate", "getReactionRatesEx", "getRatesOfChangeEx", "getResultColumnLabel", "getMatrixNumRows"])

        rrPython.simulate()
        rrPython.getReactionRatesEx([1.0, 0.9, 0.8, 0.6])
        rrPython.getRatesOfChangeEx([1.0, 0.9, 0.8, 0.6])
        rrPython.getResultColumnLabel()
        rrPython.getMatrixNumRows()

示例#2

文件： basic.py 项目： matthewSorensen/roadrunner-python

 def test_load_and_simulate(self):
     model = resource_filename('roadrunnerlib','data/feedback.xml')
     rrPython.loadSBMLFromFile(model)
     rrPython.simulate()

示例#3

文件： simulateSelectionList.py 项目： matthewSorensen/roadrunner-python

from roadrunnerlib import rrPython
from pkg_resources import resource_filename

import os

model = resource_filename('roadrunnerlib','data/feedback.xml')

sbml = rrPython.loadSBMLFromFile(model)
rrPython.setTimeStart(0.0)
rrPython.setTimeEnd(3.0)
rrPython.setNumPoints(20)
rrPython.setSteadyStateSelectionList("time S1 S2 S3 S4")
results = rrPython.simulate()

print results

示例#4

文件： rr.py 项目： matthewSorensen/roadrunner-python

from roadrunnerlib import rrPython
from pkg_resources import resource_filename

print 'RoadRunner Python'
print rrPython.getCopyright()
print 'Build on ' + rrPython.getBuildDate()

startTime = 0
endTime = 5
numPoints = 50
selList="time,S1,S2"


model = resource_filename('roadrunnerlib','data/test_1.xml')
result = rrPython.loadSBMLFromFile(model)

rrPython.setTimeStart(startTime)
rrPython.setTimeEnd(endTime)
rrPython.setNumPoints(numPoints)
rrPython.setTimeCourseSelectionList(selList)
k = rrPython.simulate()

print k