def setUp(self):
self.locs = [[0, 0, 1], [1, 0, 0], [0, 1, 0], [-1, 0, 0], [0, -1, 0]]
self.vals = [[1, 0, 0, 0, 0], [0, 0, 0, 0, 0], [1, 1, 1, 1, 1]]
self.topo = Topoplot()
self.topo.set_locations(self.locs)
self.maps = sp.prepare_topoplots(self.topo, self.vals)
def setUp(self):
self.locs = [[0, 0, 1], [1, 0, 0], [0, 1, 0], [-1, 0, 0], [0, -1, 0]]
self.vals = [[1, 0, 0, 0, 0], [0, 0, 0, 0, 0], [1, 1, 1, 1, 1]]
self.topo = Topoplot()
self.topo.set_locations(self.locs)
self.maps = sp.prepare_topoplots(self.topo, self.vals)
#
# Extract the full frequency directed transfer function (ffDTF) from the
# activations of each class and calculate the average value over the alpha band (8-12Hz).
freq = np.linspace(0, fs, ws.nfft_)
alpha, beta = {}, {}
for c in np.unique(classes):
ws.set_used_labels([c])
ws.fit_var()
con = ws.get_connectivity('ffDTF')
alpha[c] = np.mean(con[:, :, np.logical_and(8 < freq, freq < 12)], axis=2)
# Prepare topography plots
topo = Topoplot()
topo.set_locations(locs)
mixmaps = plotting.prepare_topoplots(topo, ws.mixing_)
# Force diagonal (self-connectivity) to 0
np.fill_diagonal(alpha['hand'], 0)
np.fill_diagonal(alpha['foot'], 0)
order = None
for cls in ['hand', 'foot']:
np.fill_diagonal(alpha[cls], 0)
w = alpha[cls]
m = alpha[cls] > 4
# use same ordering of components for each class
if not order:
order = cuthill_mckee(m)
# Extract the full frequency directed transfer function (ffDTF) from the
# activations of each class and calculate the average value over the alpha band
# (8-12 Hz).
freq = np.linspace(0, fs, ws.nfft_)
alpha, beta = {}, {}
for c in np.unique(classes):
ws.set_used_labels([c])
ws.fit_var()
con = ws.get_connectivity('ffDTF')
alpha[c] = np.mean(con[:, :, np.logical_and(8 < freq, freq < 12)], axis=2)
# Prepare topography plots
topo = Topoplot()
topo.set_locations(locs)
mixmaps = plotting.prepare_topoplots(topo, ws.mixing_)
# Force diagonal (self-connectivity) to 0
np.fill_diagonal(alpha['hand'], 0)
np.fill_diagonal(alpha['foot'], 0)
order = None
for cls in ['hand', 'foot']:
np.fill_diagonal(alpha[cls], 0)
w = alpha[cls]
m = alpha[cls] > 4
# use same ordering of components for each class
if not order:
order = cuthill_mckee(m)
