?x property:Located_in ?lo. filter regex(?label, "%s", "i"). } """ % (neuronName)) # print queryStr sparql.setQuery(queryStr) results = sparql.query().convert() queryResults = [] for result in results["results"]["bindings"]: outStr = unicode(result['lo']["value"]) loc = re.sub(r'http://neurolex.org/wiki/Special:URIResolver/Category-3A', '', outStr) print neuronName + ' : ' + loc neuronRegion1.append(loc) if len(result) is 0: neuronRegion1.append('') neuronNameList = load_neuron_names() queryTerm = 'Id' usingTermMethod = 'Label' for neuronName in neuronNameList: ## get all nlex id of neuron name nlex = sparql_get(queryTerm, neuronName, usingTermMethod) if nlex: print neuronName, nlex[0] n = Neuron.objects.get_or_create(nlexID = nlex[0], name = neuronName)[0] n.save() else: print neuronName + " not found in nlex" n = Neuron.objects.get_or_create(nlexID = 0, name = neuronName)[0] n.save()
""" from sparql_methods import sparql_get import neuroelectro.models as m neurons = m.Neuron.objects.all() queryTerm = 'Label' usingTermMethod = 'Id' neurons_with_new_names = [] neurons_with_no_nlex = [] neurons_no_names = [] for n in neurons: if n.nlex_id: if n.nlex_id != u'0': #print n.nlex_id newName = sparql_get(queryTerm, n.nlex_id, usingTermMethod) if len(newName) > 1: matching = [s for s in newName if "cell" in s] if len(matching) == 0: matching = [s for s in newName if "neuron" in s] newName = matching if len(newName) > 1: print (n.nlex_id), newName if len(newName) == 0: neurons_no_names.append((n.nlex_id, n.name)) continue #print n.name, newName[0] if n.name != newName[0]: neurons_with_new_names.append((n.nlex_id, newName[0], n.name)) else: neurons_with_no_nlex.append(n.name)