?x property:Located_in ?lo.
filter regex(?label, "%s", "i").
}
""" % (neuronName))
# print queryStr
sparql.setQuery(queryStr)
results = sparql.query().convert()
queryResults = []
for result in results["results"]["bindings"]:
outStr = unicode(result['lo']["value"])
loc = re.sub(r'http://neurolex.org/wiki/Special:URIResolver/Category-3A', '', outStr)
print neuronName + ' : ' + loc
neuronRegion1.append(loc)
if len(result) is 0:
neuronRegion1.append('')
neuronNameList = load_neuron_names()
queryTerm = 'Id'
usingTermMethod = 'Label'
for neuronName in neuronNameList:
## get all nlex id of neuron name
nlex = sparql_get(queryTerm, neuronName, usingTermMethod)
if nlex:
print neuronName, nlex[0]
n = Neuron.objects.get_or_create(nlexID = nlex[0], name = neuronName)[0]
n.save()
else:
print neuronName + " not found in nlex"
n = Neuron.objects.get_or_create(nlexID = 0, name = neuronName)[0]
n.save()
"""
from sparql_methods import sparql_get
import neuroelectro.models as m
neurons = m.Neuron.objects.all()
queryTerm = 'Label'
usingTermMethod = 'Id'
neurons_with_new_names = []
neurons_with_no_nlex = []
neurons_no_names = []
for n in neurons:
if n.nlex_id:
if n.nlex_id != u'0':
#print n.nlex_id
newName = sparql_get(queryTerm, n.nlex_id, usingTermMethod)
if len(newName) > 1:
matching = [s for s in newName if "cell" in s]
if len(matching) == 0:
matching = [s for s in newName if "neuron" in s]
newName = matching
if len(newName) > 1:
print (n.nlex_id), newName
if len(newName) == 0:
neurons_no_names.append((n.nlex_id, n.name))
continue
#print n.name, newName[0]
if n.name != newName[0]:
neurons_with_new_names.append((n.nlex_id, newName[0], n.name))
else:
neurons_with_no_nlex.append(n.name)
