def on_click_link(self, view, frame, req):
uri = req.get_uri()
if uri.startswith("file:///"): return False
elif uri.startswith("gwibber:"):
url = urlparse.urlparse(uri)
cmd = url.path.split("/")[1]
query = urlparse.parse_qs(url.query)
query = dict((x,y[0]) for x,y in query.items())
self.emit("action", uri, cmd, query)
else: util.load_url(uri)
return True
def get(self):
from_url, back_url = util.load_url(self.request, self.response)
for pattern in self.EXCLUDED:
if back_url.find(pattern) > -1:
back_url = '/'
logging.info("Back request from %s to %s" % (from_url, back_url))
self.redirect(back_url)
def run_online_model_experiment():
data = load_url()
model_list = [Perceptron(), StochasticGradient(),
PassiveAggressive(), ConfidenceWeighted()]
model_name = ['Perceptron', 'StochasticGradient',
'PassiveAggressive', 'ConfidenceWeighted']
model_name = ['PassiveAggressive']
model_list = [PassiveAggressive()]
for idx, model in enumerate(model_list):
cumu_false_total = 0.0
cumu_false_negative_total = 0.0
total_count = 0
file_false = open('%s_result_f' % model_name[idx], 'w')
file_false_negative = open('%s_result_fn' % model_name[idx], 'w')
for i in xrange(len(data)):
print '%s day(%d)' % (model_name[idx], i)
x = data[i]['data']
y = data[i]['labels']
cumu_false, cumu_false_negative = model.run(x, y)
cumu_false_total += cumu_false
cumu_false_negative_total += cumu_false_negative
total_count += len(y)
file_false.write("%f\n" % cumu_false_total / total_count)
file_false_negative.write("%f\n" %
cumu_false_negative_total / total_count)
file_false.close()
file_false_negative.close()
def download():
url = read_file(FILE_GDOC).strip()
print("loading %s" % url)
sheet = load_url(url)
phenos = read_csv(StringIO(sheet))
sel = phenos[phenos["malformation?"] == "y"]["phenotype"]
sel.to_csv(FILE_SELECTION, index=False)
print("got %d selected phenotypes out of %d, stored in %s" %
len(sel), len(phenos), FILE_SELECTION)
def run_speed_test():
data = load_url()
x = data[0]['data'][:1000]
y = data[0]['labels'][:1000]
model_list = [Perceptron(), StochasticGradient(),
PassiveAggressive(), ConfidenceWeighted()]
model_name = ['Perceptron', 'StochasticGradient',
'PassiveAggressive', 'ConfidenceWeighted']
for idx, model in enumerate(model_list):
start = time()
model.run(x[:1000], y[:1000])
print "%s run %f sec" % (model_name[idx], time() - start)
def run_pca_speed_test():
data = load_url()
(U, S, V) = svds(data[0]['data'].T, 100)
U = csc_matrix(U)
x = data[0]['data'][:1000]
y = data[0]['labels'][:1000]
model_list = [Perceptron(), StochasticGradient(),
PassiveAggressive(), ConfidenceWeighted()]
model_name = ['Perceptron', 'StochasticGradient',
'PassiveAggressive', 'ConfidenceWeighted']
pca_x = x.dot(U)
for idx, model in enumerate(model_list):
start = time()
model.run(x, y)
print "%s run %f sec (no_pca)" % (model_name[idx], time() - start)
start = time()
for i in range(1, x.shape[0]):
new_xi = x[i, :].dot(U)
model.reset()
model.run(pca_x, y)
print "%s run %f sec (with_pca)" % (model_name[idx], time() - start)
def setup_menu(self):
ui_string = """
<ui>
<menubar name="menubar_main">
<menu action="menu_gwibber">
<menuitem action="refresh" />
<menuitem action="search" />
<separator/>
<menuitem action="new_stream" />
<menuitem action="close_window" />
<menuitem action="close_stream" />
<separator/>
<menuitem action="quit" />
</menu>
<menu action="menu_edit">
<menuitem action="accounts" />
<menuitem action="preferences" />
</menu>
<menu action="menu_help">
<menuitem action="help_online" />
<menuitem action="help_translate" />
<menuitem action="help_report" />
<separator/>
<menuitem action="about" />
</menu>
</menubar>
<popup name="menu_tray">
<menuitem action="refresh" />
<separator />
<menuitem action="accounts" />
<menuitem action="preferences" />
<separator />
<menuitem action="quit" />
</popup>
</ui>
"""
self.actions = gtk.ActionGroup("Actions")
self.actions.add_actions([
("menu_gwibber", None, _("_Gwibber")),
("menu_edit", None, _("_Edit")),
("menu_help", None, _("_Help")),
("refresh", gtk.STOCK_REFRESH, _("_Refresh"), "F5", None,
self.on_refresh),
("search", gtk.STOCK_FIND, _("_Search"), "<ctrl>F", None,
self.on_search),
("accounts", None, _("_Accounts"), "<ctrl><shift>A", None,
self.on_accounts),
("preferences", gtk.STOCK_PREFERENCES, _("_Preferences"),
"<ctrl>P", None, self.on_preferences),
("about", gtk.STOCK_ABOUT, _("_About"), None, None, self.on_about),
("quit", gtk.STOCK_QUIT, _("_Quit"), "<ctrl>Q", None,
self.on_quit),
("new_stream", gtk.STOCK_NEW, _("_New Stream"), "<ctrl>n", None,
self.on_new_stream),
("close_window", gtk.STOCK_CLOSE, _("_Close Window"),
"<ctrl><shift>W", None, self.on_window_close),
("close_stream", gtk.STOCK_CLOSE, _("_Close Stream"), "<ctrl>W",
None, self.on_close_stream),
("help_online", None, _("Get Help Online..."), None, None,
lambda *a: util.load_url(QUESTIONS_URL)),
("help_translate", None, _("Translate This Application..."), None,
None, lambda *a: util.load_url(TRANSLATE_URL)),
("help_report", None, _("Report A Problem..."), None, None,
lambda *a: util.load_url(BUG_URL)),
])
ui = gtk.UIManager()
ui.insert_action_group(self.actions, pos=0)
ui.add_ui_from_string(ui_string)
# Add the old CTRL+R shortcut for legacy users
refresh = ui.get_widget('/menubar_main/menu_gwibber/refresh')
key, mod = gtk.accelerator_parse("<ctrl>R")
refresh.add_accelerator("activate", ui.get_accel_group(), key, mod,
gtk.ACCEL_VISIBLE)
if appindicator:
# Use appindicators to get quicklists in unity
self.ind = appindicator.Indicator(
"Gwibber", "applications-microblogging-panel",
appindicator.CATEGORY_APPLICATION_STATUS)
# create a menu
self.ai_menu = gtk.Menu()
self.ai_menu.append(gtk.SeparatorMenuItem())
ai_refresh = gtk.MenuItem(_("_Refresh"))
ai_refresh.connect("activate", self.on_refresh)
self.ai_menu.append(ai_refresh)
ai_accounts = gtk.MenuItem(_("_Accounts"))
ai_accounts.connect("activate", self.on_accounts)
self.ai_menu.append(ai_accounts)
ai_preferences = gtk.MenuItem(_("_Preferences"))
ai_preferences.connect("activate", self.on_preferences)
self.ai_menu.append(ai_preferences)
# show the items
self.ai_menu.show_all()
self.ind.set_menu(self.ai_menu)
# End use appindicators to get quicklists in unity
return ui
def setup_menu(self):
ui_string = """
<ui>
<menubar name="menubar_main">
<menu action="menu_gwibber">
<menuitem action="refresh" />
<menuitem action="search" />
<separator/>
<menuitem action="new_stream" />
<menuitem action="close_window" />
<menuitem action="close_stream" />
<separator/>
<menuitem action="quit" />
</menu>
<menu action="menu_edit">
<menuitem action="accounts" />
<menuitem action="preferences" />
</menu>
<menu action="menu_help">
<menuitem action="help_online" />
<menuitem action="help_translate" />
<menuitem action="help_report" />
<separator/>
<menuitem action="about" />
</menu>
</menubar>
<popup name="menu_tray">
<menuitem action="refresh" />
<separator />
<menuitem action="accounts" />
<menuitem action="preferences" />
<separator />
<menuitem action="quit" />
</popup>
</ui>
"""
self.actions = gtk.ActionGroup("Actions")
self.actions.add_actions([
("menu_gwibber", None, _("_Gwibber")),
("menu_edit", None, _("_Edit")),
("menu_help", None, _("_Help")),
("refresh", gtk.STOCK_REFRESH, _("_Refresh"), "F5", None, self.on_refresh),
("search", gtk.STOCK_FIND, _("_Search"), "<ctrl>F", None, self.on_search),
("accounts", None, _("_Accounts"), "<ctrl><shift>A", None, self.on_accounts),
("preferences", gtk.STOCK_PREFERENCES, _("_Preferences"), "<ctrl>P", None, self.on_preferences),
("about", gtk.STOCK_ABOUT, _("_About"), None, None, self.on_about),
("quit", gtk.STOCK_QUIT, _("_Quit"), "<ctrl>Q", None, self.on_quit),
("new_stream", gtk.STOCK_NEW, _("_New Stream"), "<ctrl>n", None, self.on_new_stream),
("close_window", gtk.STOCK_CLOSE, _("_Close Window"), "<ctrl><shift>W", None, self.on_window_close),
("close_stream", gtk.STOCK_CLOSE, _("_Close Stream"), "<ctrl>W", None, self.on_close_stream),
("help_online", None, _("Get Help Online..."), None, None, lambda *a: util.load_url(QUESTIONS_URL)),
("help_translate", None, _("Translate This Application..."), None, None, lambda *a: util.load_url(TRANSLATE_URL)),
("help_report", None, _("Report A Problem..."), None, None, lambda *a: util.load_url(BUG_URL)),
])
ui = gtk.UIManager()
ui.insert_action_group(self.actions, pos=0)
ui.add_ui_from_string(ui_string)
# Add the old CTRL+R shortcut for legacy users
refresh = ui.get_widget('/menubar_main/menu_gwibber/refresh')
key, mod = gtk.accelerator_parse("<ctrl>R")
refresh.add_accelerator("activate", ui.get_accel_group(), key, mod, gtk.ACCEL_VISIBLE)
if appindicator:
# Use appindicators to get quicklists in unity
self.ind = appindicator.Indicator ("Gwibber",
"applications-microblogging-panel",
appindicator.CATEGORY_APPLICATION_STATUS)
# create a menu
self.ai_menu = gtk.Menu()
self.ai_menu.append(gtk.SeparatorMenuItem())
ai_refresh = gtk.MenuItem(_("_Refresh"))
ai_refresh.connect("activate", self.on_refresh)
self.ai_menu.append(ai_refresh)
ai_accounts = gtk.MenuItem(_("_Accounts"))
ai_accounts.connect("activate", self.on_accounts)
self.ai_menu.append(ai_accounts)
ai_preferences = gtk.MenuItem(_("_Preferences"))
ai_preferences.connect("activate", self.on_preferences)
self.ai_menu.append(ai_preferences)
# show the items
self.ai_menu.show_all()
self.ind.set_menu(self.ai_menu)
# End use appindicators to get quicklists in unity
return ui
def run_all_svm_experiment():
data = load_url()
svm_once(data)
svm_daily(data)
svm_cum(data)
def setup_menu(self):
ui_string = """
<ui>
<menubar name="menubar_main">
<menu action="menu_gwibber">
<menuitem action="refresh" />
<menuitem action="search" />
<separator/>
<menuitem action="new_stream" />
<menuitem action="close_window" />
<menuitem action="close_stream" />
<separator/>
<menuitem action="quit" />
</menu>
<menu action="menu_edit">
<menuitem action="accounts" />
<menuitem action="preferences" />
</menu>
<menu action="menu_help">
<menuitem action="help_online" />
<menuitem action="help_translate" />
<menuitem action="help_report" />
<separator/>
<menuitem action="about" />
</menu>
</menubar>
<popup name="menu_tray">
<menuitem action="refresh" />
<separator />
<menuitem action="accounts" />
<menuitem action="preferences" />
<separator />
<menuitem action="quit" />
</popup>
</ui>
"""
self.actions = gtk.ActionGroup("Actions")
self.actions.add_actions([
("menu_gwibber", None, _("_Gwibber")),
("menu_edit", None, _("_Edit")),
("menu_help", None, _("_Help")),
("refresh", gtk.STOCK_REFRESH, _("_Refresh"), "F5", None,
self.on_refresh),
("search", gtk.STOCK_FIND, _("_Search"), "<ctrl>F", None,
self.on_search),
("accounts", None, _("_Accounts"), "<ctrl><shift>A", None,
self.on_accounts),
("preferences", gtk.STOCK_PREFERENCES, _("_Preferences"),
"<ctrl>P", None, self.on_preferences),
("about", gtk.STOCK_ABOUT, _("_About"), None, None, self.on_about),
("quit", gtk.STOCK_QUIT, _("_Quit"), "<ctrl>Q", None,
self.on_quit),
("new_stream", gtk.STOCK_NEW, _("_New Stream"), "<ctrl>n", None,
self.on_new_stream),
("close_window", gtk.STOCK_CLOSE, _("_Close Window"),
"<ctrl><shift>W", None, self.on_window_close),
("close_stream", gtk.STOCK_CLOSE, _("_Close Stream"), "<ctrl>W",
None, self.on_close_stream),
("help_online", None, _("Get Help Online..."), None, None,
lambda *a: util.load_url(QUESTIONS_URL)),
("help_translate", None, _("Translate This Application..."), None,
None, lambda *a: util.load_url(TRANSLATE_URL)),
("help_report", None, _("Report A Problem..."), None, None,
lambda *a: util.load_url(BUG_URL)),
])
ui = gtk.UIManager()
ui.insert_action_group(self.actions, pos=0)
ui.add_ui_from_string(ui_string)
# Add the old CTRL+R shortcut for legacy users
refresh = ui.get_widget('/menubar_main/menu_gwibber/refresh')
key, mod = gtk.accelerator_parse("<ctrl>R")
refresh.add_accelerator("activate", ui.get_accel_group(), key, mod,
gtk.ACCEL_VISIBLE)
return ui
def action(self, w, client, msg):
if msg.has_key("url"):
util.load_url(msg["url"])
elif msg.has_key("images"):
util.load_url(msg["images"][0]["url"])
def action(self, w, client, msg):
if msg.has_key("url"):
util.load_url(msg["url"])
elif msg.has_key("images"):
util.load_url(msg["images"][0]["url"])
def setup_menu(self):
ui_string = """
<ui>
<menubar name="menubar_main">
<menu action="menu_gwibber">
<menuitem action="refresh" />
<menuitem action="search" />
<separator/>
<menuitem action="new_stream" />
<menuitem action="close_window" />
<menuitem action="close_stream" />
<separator/>
<menuitem action="quit" />
</menu>
<menu action="menu_edit">
<menuitem action="accounts" />
<menuitem action="preferences" />
</menu>
<menu action="menu_help">
<menuitem action="help_online" />
<menuitem action="help_translate" />
<menuitem action="help_report" />
<separator/>
<menuitem action="about" />
</menu>
</menubar>
<popup name="menu_tray">
<menuitem action="refresh" />
<separator />
<menuitem action="accounts" />
<menuitem action="preferences" />
<separator />
<menuitem action="quit" />
</popup>
</ui>
"""
self.actions = gtk.ActionGroup("Actions")
self.actions.add_actions([
("menu_gwibber", None, _("_Gwibber")),
("menu_edit", None, _("_Edit")),
("menu_help", None, _("_Help")),
("refresh", gtk.STOCK_REFRESH, _("_Refresh"), "F5", None, self.on_refresh),
("search", gtk.STOCK_FIND, _("_Search"), "<ctrl>F", None, self.on_search),
("accounts", None, _("_Accounts"), "<ctrl><shift>A", None, self.on_accounts),
("preferences", gtk.STOCK_PREFERENCES, _("_Preferences"), "<ctrl>P", None, self.on_preferences),
("about", gtk.STOCK_ABOUT, _("_About"), None, None, self.on_about),
("quit", gtk.STOCK_QUIT, _("_Quit"), "<ctrl>Q", None, self.on_quit),
("new_stream", gtk.STOCK_NEW, _("_New Stream"), "<ctrl>n", None, self.on_new_stream),
("close_window", gtk.STOCK_CLOSE, _("_Close Window"), "<ctrl><shift>W", None, self.on_window_close),
("close_stream", gtk.STOCK_CLOSE, _("_Close Stream"), "<ctrl>W", None, self.on_close_stream),
("help_online", None, _("Get Help Online..."), None, None, lambda *a: util.load_url(QUESTIONS_URL)),
("help_translate", None, _("Translate This Application..."), None, None, lambda *a: util.load_url(TRANSLATE_URL)),
("help_report", None, _("Report A Problem..."), None, None, lambda *a: util.load_url(BUG_URL)),
])
ui = gtk.UIManager()
ui.insert_action_group(self.actions, pos=0)
ui.add_ui_from_string(ui_string)
# Add the old CTRL+R shortcut for legacy users
refresh = ui.get_widget('/menubar_main/menu_gwibber/refresh')
key, mod = gtk.accelerator_parse("<ctrl>R")
refresh.add_accelerator("activate", ui.get_accel_group(), key, mod, gtk.ACCEL_VISIBLE)
return ui