"""Visualize a 2D/3D network and its properties"""
# (see also example: lineage_graph.py)
from vedo import Points, show, sin
from vedo.pyplot import DirectedGraph
# Create some graph with nodes and edges
# layouts: [2d, fast2d, clustering2d, circular, circular3d, cone, force, tree]
g = DirectedGraph(layout='fast2d')
for i in range(6):
g.addChild(i) # add one child node to node i
for i in range(3):
g.addChild(i)
for i in range(3):
g.addChild(i)
for i in range(7, 9):
g.addChild(i)
for i in range(3):
g.addChild(12) # add 3 children to node 12
g.build()
dgraph = g.unpack(0).lineWidth(4) # get the graph lines
nodes = dgraph.points() # get the 3d points of the nodes
pts = Points(nodes, r=12).c('red').alpha(0.5)
v1 = ['node' + str(n) for n in range(len(nodes))]
v2 = [sin(x) for x in range(len(nodes))]
labs1 = pts.labels(v1, scale=.04, italic=True).addPos(.05, 0.04, 0).c('green')
labs2 = pts.labels(v2, scale=.04, precision=3).addPos(.05, -.04, 0).c('red')
# Interpolate the node value to color the edges:
"""Visualize a 2D/3D network and its properties"""
# (see also example: lineage_graph.py)
from vedo import Points, show, sin
from vedo.pyplot import DirectedGraph
# Create some graph with nodes and edges
# layouts: [2d, fast2d, clustering2d, circular, circular3d, cone, force, tree]
g = DirectedGraph(layout='fast2d')
##################### Use networkx to create random nodes and edges
# import networkx
# G = networkx.gnm_random_graph(n=20, m=35)
# for i, j in G.edges(): g.addEdge(j,i)
##################### Manually create nodes and edges
for i in range(6): g.addChild(i) # add one child node to node i
for i in range(3): g.addChild(i)
for i in range(3): g.addChild(i)
for i in range(7,9): g.addChild(i)
for i in range(3): g.addChild(12) # add 3 children to node 12
g.addEdge(1,16)
##################### build and draw
graph = g.build().unpack(0).lineWidth(4) # get the vedo 3d graph lines
nodes = graph.points() # get the 3d points of the nodes
pts = Points(nodes, r=10).lighting('off')
v1 = ['node'+str(n) for n in range(len(nodes))]
v2 = [sin(x) for x in range(len(nodes))]
labs1 = pts.labels(v1, scale=.04, italic=True).addPos(.05,0.04,0).c('green')
"""
# N.B.: no positions are specified here, only connectivity!
from vedo import show, settings
from vedo.pyplot import DirectedGraph
settings.allowSubScripts = 0
# Layouts: [2d, fast2d, clustering2d, circular, circular3d, cone, force, tree]
#g = Graph(layout='2d', zrange=7)
g = DirectedGraph(layout='cone')
#g = DirectedGraph(layout='circular3d', height=1, radius=1.5)
#g = DirectedGraph(layout='force')
# Vertex generation is automatic,
# add a child to vertex0, so that now vertex1 exists
g.addChild(0, edgeLabel="Mother giving birth\nto her little baby cell")
g.addChild(1)
g.addChild(1)
g.addChild(2)
g.addChild(2)
g.addChild(2)
g.addChild(3)
g.addChild(3, edgeLabel="It's a male!")
g.addChild(4)
g.addChild(4)
for i in range(7):
g.addChild(5, vertexLabel="cell5_" + str(i))
g.addChild(7)
g.addChild(7)
g.addChild(7)