def __init__(self, parent = None, title=None):
QtGui.QMainWindow.__init__(self, parent)
if title:
self.setWindowTitle(title)
else:
self.setWindowTitle('Visualization')
self.vl = QtGui.QVBoxLayout()
self.hl = QtGui.QHBoxLayout()
self.frame = QtGui.QFrame()
self.vtkWidget, self.ren, self.iren, self.intstyle = self.init_vtk_widget(self.frame)
self.save_main_vizualization_button = self.init_save_vizualization_button(
self.frame,
self.vtkWidget.GetRenderWindow()
)
self.vl.addWidget(self.vtkWidget)
self.hl.insertLayout(-1, self.vl)
self.ren = vtk.vtkRenderer()
self.vtkWidget.GetRenderWindow().AddRenderer(self.ren)
self.vtkWidget.GetRenderWindow().LineSmoothingOn()
self.vtkWidget.GetRenderWindow().PolygonSmoothingOn()
self.vtkWidget.GetRenderWindow().PointSmoothingOn()
self.vtkWidget.GetRenderWindow().SetMultiSamples(8)
self.iren = self.vtkWidget.GetRenderWindow().GetInteractor()
self.ren.GetActiveCamera().ParallelProjectionOn()
self.intstyle = vtk.vtkInteractorStyleRubberBand2D()
self.iren.SetInteractorStyle(self.intstyle)
self.ren.SetBackground(1.0, 1.0, 1.0)
self.frame.setLayout(self.hl)
self.setCentralWidget(self.frame)
def OpenAddBoundaryDlg(self):
self.style = vtk.vtkInteractorStyleRubberBand2D()
self.position=[0.0,0.0,0.0,0.0]
self.statusbar.showMessage('Select Boundary Elements')
self.style.area_picker = vtk.vtkRenderedAreaPicker()
self.style.AddObserver("LeftButtonReleaseEvent", self.leftButtonReleaseEvent)
self.style.SetDefaultRenderer(self.renderer)
self.renWinInteract.SetInteractorStyle(self.style)
self.renWinInteract.SetPicker(self.style.area_picker)
def set_interaction(self, interaction):
if interaction == "rubber_band_2d":
for renderer in self.plotter.renderers:
renderer.enable_parallel_projection()
if hasattr(self.plotter, 'enable_rubber_band_2d_style'):
self.plotter.enable_rubber_band_2d_style()
else:
style = vtk.vtkInteractorStyleRubberBand2D()
self.plotter.interactor.SetInteractorStyle(style)
else:
for renderer in self.plotter.renderers:
renderer.disable_parallel_projection()
getattr(self.plotter, f'enable_{interaction}_style')()
def show(self, render_window=None):
if render_window is None:
render_window = vtk.vtkRenderWindow()
render_window.SetSize(700, 700)
render_window.AddRenderer(self.renderer)
render_interactor = vtk.vtkRenderWindowInteractor()
if self.allow_rotation:
render_interactor.SetInteractorStyle(vtk.vtkInteractorStyleTrackballCamera())
else:
render_interactor.SetInteractorStyle(vtk.vtkInteractorStyleRubberBand2D())
render_interactor.SetRenderWindow(render_window)
render_interactor.Initialize()
render_interactor.Start()
def show(self, render_window=None):
if render_window is None:
render_window = vtk.vtkRenderWindow()
render_window.SetSize(700, 700)
render_window.AddRenderer(self.renderer)
render_interactor = vtk.vtkRenderWindowInteractor()
if self.allow_rotation:
render_interactor.SetInteractorStyle(vtk.vtkInteractorStyleTrackballCamera())
else:
render_interactor.SetInteractorStyle(vtk.vtkInteractorStyleRubberBand2D())
render_interactor.SetRenderWindow(render_window)
render_interactor.Initialize()
render_interactor.Start()
def _createwindow(self):
ren1 = vtk.vtkRenderer()
ren1.AddActor(self.actor)
ren1.SetBackground(0.1, 0.2, 0.4)
ren1.ResetCamera()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren1)
renWin.SetSize(700, 700)
iren = vtk.vtkRenderWindowInteractor()
if self.rotation:
iren.SetInteractorStyle(vtk.vtkInteractorStyleTrackballCamera())
else:
iren.SetInteractorStyle(vtk.vtkInteractorStyleRubberBand2D())
iren.SetRenderWindow(renWin)
iren.Initialize()
iren.Start()
def init_vtk_widget(self, widget):
vtk_widget = QVTKRenderWindowInteractor(widget)
renderer = vtk.vtkRenderer()
vtk_widget.GetRenderWindow().AddRenderer(renderer)
renderer.SetBackground(1.0, 1.0, 1.0)
interactor = vtk_widget.GetRenderWindow().GetInteractor()
interactor_style = vtk.vtkInteractorStyleRubberBand2D()
interactor.SetInteractorStyle(interactor_style)
vtk_widget.GetRenderWindow().LineSmoothingOn()
vtk_widget.GetRenderWindow().PolygonSmoothingOn()
vtk_widget.GetRenderWindow().PointSmoothingOn()
vtk_widget.GetRenderWindow().SetMultiSamples(8)
return vtk_widget, renderer, interactor, interactor_style
def show(self):
self.renderer = vtk.vtkRenderer()
self.renderer.SetBackground(0.1, 0.2, 0.4) # Blue
self.renderer.ResetCamera()
self.renderer.AddActor(self.actor)
render_window = vtk.vtkRenderWindow()
render_window.SetSize(700, 700)
render_window.AddRenderer(self.renderer)
render_interactor = vtk.vtkRenderWindowInteractor()
if self.allow_rotation:
render_interactor.SetInteractorStyle(
vtk.vtkInteractorStyleTrackballCamera())
else:
render_interactor.SetInteractorStyle(
vtk.vtkInteractorStyleRubberBand2D())
render_interactor.SetRenderWindow(render_window)
render_interactor.Initialize()
render_interactor.Start()
def __init__(self, parent=None):
QtGui.QMainWindow.__init__(self, parent)
self.ui = Ui_MainWindow()
data_file = "/Users/emonson/Data/Fodava/EMoGWDataSets/mnist12_1k_20100521.mat"
self.ds = DataSource(data_file)
self.pc_class = PCoordsChart(self.ds)
self.view = self.pc_class.GetView()
self.ui.setupUi(self, self.view.GetRenderWindow())
style = vtk.vtkInteractorStyleRubberBand2D()
self.view.SetInteractorStyle(style)
# Need this additional command (plus above set style) for this class
self.view.SetInteractionModeTo2D()
self.view.ResetCamera()
self.view.GetInteractor().Start()
def show(*graphics):
allow_rotation = True
render_window = vtk.vtkRenderWindow()
render_window.SetSize(700, 700)
render_interactor = vtk.vtkRenderWindowInteractor()
if allow_rotation:
render_interactor.SetInteractorStyle(
vtk.vtkInteractorStyleTrackballCamera())
else:
render_interactor.SetInteractorStyle(
vtk.vtkInteractorStyleRubberBand2D())
renderer = vtk.vtkRenderer()
renderer.SetBackground(0.1, 0.2, 0.4) # Blue
renderer.ResetCamera()
for g in graphics:
g.redraw()
renderer.AddActor(g.actor)
render_interactor.SetRenderWindow(render_window)
render_window.AddRenderer(renderer)
render_interactor.Initialize()
render_interactor.Start()
def __init__(self, parent = None):
QtGui.QMainWindow.__init__(self, parent)
self.ui = Ui_MainWindow()
self.renWinList = []
# data_file = askopenfilename()
data_file = '/Users/emonson/Data/Fodava/EMoGWDataSets/mnist1_5c_20100324.mat'
# self.openFilesDefaultPath = QtCore.QDir.homePath()
# data_file = QtGui.QFileDialog.getOpenFileName(self,
# "Load Saved Matlab File",
# self.openFilesDefaultPath,
# "All Files (*);;Matlab Files (*.mat)")
# DataSource loads .mat file and can generate data from it for other views
self.ds = DataSource(str(data_file))
# All view classes have access to an instance of that data source for internal queries
# Note that the only view which will pull and display data right away is the icicle view
# the other views need to be able to initialize without any data and only pull and show
# upon the first AnnotationChanged event...
# View #0 -- Icicle View
# Set up a 2D scene, add an XY chart to it
self.chartView = vtk.vtkContextView()
self.chartView.GetRenderer().SetBackground(1.0, 1.0, 1.0)
self.renWinList.append(self.chartView.GetRenderWindow())
self.chart = vtkvtg.vtkMyChartXY()
self.chartView.GetScene().AddItem(self.chart)
# View #1 -- AxisImageView
self.axisView = vtk.vtkContextView()
self.axisView.GetRenderer().SetBackground(1.0, 1.0, 1.0)
self.renWinList.append(self.axisView.GetRenderWindow())
self.ai = vtkvtg.vtkAxisImageItem()
self.axisView.GetScene().AddItem(self.ai)
# Set up all the render windows in the GUI
self.ui.setupUi(self, self.renWinList)
# Now need to get all the interactors working properly
# XY
style0 = vtk.vtkInteractorStyleRubberBand2D()
self.chartView.GetInteractor().SetInteractorStyle(style0)
self.chartView.GetScene().SetInteractorStyle(style0)
# Axis images
style1 = vtk.vtkInteractorStyleRubberBand2D()
self.axisView.GetInteractor().SetInteractorStyle(style1)
self.axisView.GetScene().SetInteractorStyle(style1)
# Set sizes for veritcal splitters
self.ui.splitter.setSizes([200,400])
# Connect signals and slots
QtCore.QObject.connect(self.ui.actionExit, QtCore.SIGNAL("triggered()"), self.fileExit)
# CORE setting up chart and axis images
test_id = 68
self.table = self.ds.GetNodeOneScaleCoeffTable(test_id)
line1 = vtkvtg.vtkMyPlotPoints()
# line1.DebugOn()
self.chart.AddPlot(line1) # POINTS
line1.SetInput(self.table, 0, 1)
line1.SetMarkerStyle(2)
line1.SetColor(0, 0, 0, 255)
# Tooltip image stack will now be owned by the tooltip, so need to do that differently...
id_list = self.ds.PIN[test_id]
image_stack = self.ds.GetProjectedImages(id_list)
self.chart.SetTooltipImageStack(image_stack)
self.chart.SetTooltipShowImage(True)
# self.chart.SetTooltipImageScalingFactor(2.0)
self.chart.SetTooltipImageTargetSize(40)
axis_images = self.ds.GetNodeBasisImages(test_id)
center_image = self.ds.GetNodeCenterImage(test_id)
self.ai.SetAxisImagesHorizontal()
self.ai.SetChartXY(self.chart)
self.ai.SetChartXYView(self.chartView)
self.ai.SetAxisImageStack(axis_images)
self.ai.SetCenterImage(center_image)
# Set up annotation link which will carry indices to parallel coordinates chart
# for highlighting outside selections (e.g. back from image_flow)
# This needs to carry indices, while image_flow link outputs pedigree ids
# so conversion happens in HighlightSelectionCallback
# data_col_idxs = vtk.vtkAnnotationLink()
# data_col_idxs.GetCurrentSelection().GetNode(0).SetFieldType(1) # Point
# data_col_idxs.GetCurrentSelection().GetNode(0).SetContentType(4) # 2 = PedigreeIds, 4 = Indices
# self.chart.SetDataColumnsLink(data_col_idxs)
# self.ai.SetDataColumnsLink(data_col_idxs)
# Create a annotation link to access selection in XY chart
annotationLink = vtk.vtkAnnotationLink()
annotationLink.GetCurrentSelection().GetNode(0).SetFieldType(1) # Point
annotationLink.GetCurrentSelection().GetNode(0).SetContentType(4) # Indices
# Connect the annotation link to the parallel coordinates representation
self.chart.SetAnnotationLink(annotationLink)
self.chart.GetAnnotationLink().AddObserver("AnnotationChangedEvent", self.IcicleSelectionCallback)
# Set up annotation link which will carry indices to parallel coordinates chart
# for highlighting outside selections (e.g. back from image_flow)
# This needs to carry indices, while image_flow link outputs pedigree ids
# so conversion happens in HighlightSelectionCallback
highlight_link_idxs = vtk.vtkAnnotationLink()
highlight_link_idxs.GetCurrentSelection().GetNode(0).SetFieldType(1) # Point
highlight_link_idxs.GetCurrentSelection().GetNode(0).SetContentType(4) # 2 = PedigreeIds, 4 = Indices
self.chart.SetHighlightLink(highlight_link_idxs)
# Fill selection link with dummy IDs
id_array = N.array([0],dtype='int64')
id_list = VN.numpy_to_vtkIdTypeArray(id_array, deep=True)
highlight_link_idxs.GetCurrentSelection().GetNode(0).SetSelectionList(id_list)
highlight_link_idxs.InvokeEvent("AnnotationChangedEvent")
# self.updater = vtk.vtkViewUpdater()
# self.updater.AddAnnotationLink(data_col_idxs)
# self.updater.AddView(self.axisView)
# self.updater.AddView(self.chartView)
# col_array = N.array([0,1],dtype='int64')
# col_vtk = VN.numpy_to_vtkIdTypeArray(col_array, deep=True)
# data_col_idxs.GetCurrentSelection().GetNode(0).SetSelectionList(col_vtk)
# data_col_idxs.InvokeEvent("AnnotationChangedEvent")
self.chart.RecalculateBounds()
# Only need to Start() interactor for one view
# self.pc_class.GetView().GetInteractor().Start()
# Shouldn't have to do this render...
for rw in self.renWinList:
rw.Render()
def SetStyle(self, style=None):
if style:
self.style = style
else:
self.style = vtk.vtkInteractorStyleRubberBand2D()
def __init__(self, parent = None):
# Number of slider divisions per integer value
self.divs = 10
# self.rot_method = 'alt_axis'
self.rot_method = '111'
# self.rot_method = 'simple'
self.axis_rescale = False
QtGui.QMainWindow.__init__(self, parent)
self.ui = Ui_MainWindow()
# Set up a 2D scene, add an XY chart to it
self.view = vtk.vtkContextView()
self.view.GetRenderer().SetBackground(1.0, 1.0, 1.0)
self.ui.setupUi(self, self.view.GetRenderWindow())
if self.rot_method == 'alt_axis':
self.ui.comboBox.setCurrentIndex(0)
elif self.rot_method == '111':
self.ui.comboBox.setCurrentIndex(1)
else:
self.ui.comboBox.setCurrentIndex(2)
style = vtk.vtkInteractorStyleRubberBand2D()
self.view.GetInteractor().SetInteractorStyle(style)
self.view.GetScene().SetInteractorStyle(style)
# Need this additional command (plus above set style) for this class
# self.view.SetInteractionModeTo2D()
self.chart = vtk.vtkChartXY()
self.chart.SetShowLegend(False)
# Create a annotation link to access selection in parallel coordinates view
annotationLink = vtk.vtkAnnotationLink()
# If you don't set the FieldType explicitly it ends up as UNKNOWN (as of 21 Feb 2010)
# See vtkSelectionNode doc for field and content type enum values
annotationLink.GetCurrentSelection().GetNode(0).SetFieldType(1) # Point
annotationLink.GetCurrentSelection().GetNode(0).SetContentType(4) # Indices
# Connect the annotation link to the parallel coordinates representation
self.chart.SetAnnotationLink(annotationLink)
self.view.GetScene().AddItem(self.chart)
# Set up callback to update 3d render window when selections are changed in
# parallel coordinates view
annotationLink.AddObserver("AnnotationChangedEvent", self.selectionCallback)
QtCore.QObject.connect(self.ui.actionExit, QtCore.SIGNAL("triggered()"), self.fileExit)
QtCore.QObject.connect(self.ui.actionOpen, QtCore.SIGNAL("triggered()"), self.LoadData)
QtCore.QObject.connect(self.ui.horizontalSlider, QtCore.SIGNAL("valueChanged(int)"), self.columnUpdate)
QtCore.QObject.connect(self.ui.comboBox, QtCore.SIGNAL("currentIndexChanged(int)"), self.rotMethodChanged)
self.LoadData()
self.view.ResetCamera()
self.ui.vtkWidget.GetRenderWindow().Render()
self.view.GetInteractor().Start()
def plot(self, struct):
# creates self. data1, legend, filename, fieldname, dim, has_field, tracker, revision
if not self.call_config(struct):
return
# creates self.src
#if not self.call_src():
# return
self.rens[0].SetBackground((1.0, 1.0, 1.0))
self.xyplot = vtk.vtkXYPlotActor()
if self.tracker.is_void:
return False
elif self.tracker.type == "node_files":
series_num = 0
labels = []
trackers = self.tracker.trackers
self.dataname = []
for tracker in trackers:
self.dataname.append(tracker.get_vtkfile())
for name in self.dataname:
res = self.Gr2_File_to_Polydata(name)
polydata = res.get('polydata')
labels.extend(res.get('labels')[min(len(labels), 3):])
series_num = series_num + res.get('series_num')
for pd in polydata:
if vtk.vtkVersion.GetVTKMajorVersion() < 6:
self.xyplot.AddInput(pd)
else:
self.xyplot.AddDataSetInput(pd)
# return False
else:
self.dataname = self.tracker.get_vtkfile()
#returns 'labels', 'series_num' and 'polydata' keys
res = self.Gr2_File_to_Polydata(self.dataname)
polydata = res.get('polydata')
labels = res.get('labels')
series_num = res.get('series_num')
for pd in polydata:
if vtk.vtkVersion.GetVTKMajorVersion() < 6:
self.xyplot.AddInput(pd)
else:
self.xyplot.AddDataSetInput(pd)
self.xyplot.GetPositionCoordinate().SetValue(self.pospi0)
self.xyplot.GetPosition2Coordinate().SetValue(self.pospt0) # rel
# relative to the ones avobe
self.xyplot.SetLegendPosition(self.posli0)
self.xyplot.SetLegendPosition2(self.poslt0) # rel
# self.xyplot.SetXValuesToArcLength()
self.xyplot.SetXValuesToValue()
temp = labels[0]
if temp is None:
temp = '2D graph'
self.xyplot.SetTitle(temp)
temp = labels[1]
if temp is None:
temp = 'X axis'
self.xyplot.SetXTitle(temp)
temp = labels[2]
if temp is None:
temp = 'Y axis'
self.xyplot.SetYTitle(temp)
for t in range(series_num):
temp = labels[3 + t]
if temp is None:
temp = 'Series ' + unicode(t)
self.xyplot.SetPlotLabel(t, temp)
self.xyplot.SetPlotColor(t, palette[t % len(palette)])
self.xyplot.LegendOn()
self.xyplot.PlotPointsOn()
self.xyplot.GetProperty().SetColor(0.0, 0.0, 0.0)
self.xyplot.GetProperty().SetPointSize(3)
# Set text prop color (same color for backward compat with test)
# Assign same object to all text props
tprop = self.xyplot.GetTitleTextProperty()
tprop.SetColor(self.xyplot.GetProperty().GetColor())
self.xyplot.SetAxisTitleTextProperty(tprop)
self.xyplot.SetAxisLabelTextProperty(tprop)
self.copy_params(struct)
self.set_iren()
self.inter = vtk.vtkInteractorStyleRubberBand2D()
#self.inter = vtk.vtkInteractorStyleRubberBandZoom()
self.inter.SetInteractor(self.iren)
self.widget.SetInteractorStyle(self.inter)
self.rens[0].AddActor(self.xyplot)
self.last = None
self.inter.AddObserver("SelectionChangedEvent", self.selection)
# meanwhile not enough with the above:
self.inter.AddObserver("StartInteractionEvent", self.selectioni)
self.inter.AddObserver("EndInteractionEvent", self.selectionf)
self.done = True
import math import vtkvtg from data_source import DataSource data_file = '/Users/emonson/Data/Fodava/EMoGWDataSets/mnist1_5c_20100324.mat' # DataSource loads .mat file and can generate data from it for other views ds = DataSource(data_file) renwin = vtk.vtkRenderWindow() renwin.SetMultiSamples(0) renwin.SetSize(400, 600) iren = vtk.vtkRenderWindowInteractor() istyle = vtk.vtkInteractorStyleRubberBand2D() iren.SetInteractorStyle(istyle) iren.SetRenderWindow(renwin) # setup the 2 view ports viewports = [(0.0,0.0,1.0,0.5), (0.0,0.5,1.0,1.0)] # CHART chartRen = vtk.vtkRenderer() chartRen.SetBackground(1.0,1.0,1.0) chartRen.SetViewport(viewports[1]) renwin.AddRenderer(chartRen) # Testing my custom chart class which has image hover tooltips chart = vtkvtg.vtkMyChartXY() chartScene = vtk.vtkContextScene()
def loadGraph():
# ----------
# Load and construct whole graph and multi-resolution data from Matlab structure
dataDir = '/Users/emonson/Programming/Matlab/EMonson/Fodava/DocumentAnalysis/Analysis/'
filename = dataDir + 'X20_042709b.mat'
# filename = '/Users/emonson/Programming/Python/VTK/X20_040609b.mat'
X = scipy.io.loadmat(filename)
# Get graph structure G out of matlab variables
G = X['G']
# ----------
# Set multi-resolution level bounds in GUI sliders
levelMax = G.Tree.shape[0]-1
ui_window.hSlider_level.setMinimum(1)
ui_window.hSlider_level.setMaximum(levelMax)
ui_window.spinBox_level.setMinimum(1)
ui_window.spinBox_level.setMaximum(levelMax)
# Start setting up basis function for display as subgraph
ExtBasis = GTree[level,0]['ExtBasis'][0][0][0]
basisMax = ExtBasis.shape[1]-1 # zero-based indices
# Set particular level basis function bounds in GUI sliders
ui_window.hSlider_basisIndex.setMinimum(0)
ui_window.hSlider_basisIndex.setMaximum(basisMax)
ui_window.spinBox_basisIndex.setMinimum(0)
ui_window.spinBox_basisIndex.setMaximum(basisMax)
# Build table which will become graph
table = vtk.vtkTable()
col0 = vtk.vtkIntArray()
col0.SetName('index1')
col1 = vtk.vtkIntArray()
col1.SetName('index2')
val = vtk.vtkDoubleArray()
val.SetName('weight')
Tmat = G.T
# Tmat = G.W
for ii in range(Tmat.nzmax):
col0.InsertNextValue(Tmat.rowcol(ii)[0])
col1.InsertNextValue(Tmat.rowcol(ii)[1])
val.InsertNextValue(abs(Tmat.getdata(ii)))
table.AddColumn(col0)
table.AddColumn(col1)
table.AddColumn(val)
# Vertex links need to be done with index2 first or indexing won't be right...
# TODO: Make this foolproof so that graph always ends up with correct ordering of indices...
tgraph = vtk.vtkTableToGraph()
tgraph.SetInput(table)
tgraph.AddLinkVertex('index2', 'stuff', False)
tgraph.AddLinkVertex('index1', 'stuff', False)
tgraph.AddLinkEdge('index2', 'index1')
rawGraph = tgraph.GetOutput()
rawGraph.Update()
# print graph
# Load and assign whole graph pre-layout coordinates
ptsFile = os.path.splitext(filename)[0] + '_pts.vtp'
if os.path.exists(ptsFile):
polyreader = vtk.vtkXMLPolyDataReader()
polyreader.SetFileName(ptsFile)
polyreader.Update()
pts = polyreader.GetOutput().GetPoints()
rawGraph.SetPoints(pts)
# print pts
strategy = vtk.vtkPassThroughLayoutStrategy()
layout = vtk.vtkGraphLayout()
layout.SetInput(rawGraph)
layout.SetLayoutStrategy(strategy)
edgeLayout = vtk.vtkEdgeLayout()
edgeStrategy = vtk.vtkArcParallelEdgeStrategy()
edgeStrategy.SetNumberOfSubdivisions(50)
edgeLayout.SetInputConnection(layout.GetOutputPort())
edgeLayout.SetLayoutStrategy(edgeStrategy)
graph = edgeLayout.GetOutput()
graph.Update()
# --------
# Add ExtBasis to graph data & Select particular basis function
# print 'ExtBasis shape: ' + str(ExtBasis[:,basisNum].data.shape) + ' (level,basis) (' + str(level) + ',' + str(basisNum) + ')'
# Indexing of ExtBasis is backwards from graph, so need to reverse with [::-1]
# and array not "contiguous" if don't do .copy()
Esub = ExtBasis[:,basisNum].data[::-1].copy()
EsubSq = Esub**2
# Esub = N.random.random(ExtBasis[:,basisNum].data.shape[0])
# SubIdxs = (Esub > 0.001).nonzero()
# SubIdxs = (Esub**2 > 0.8).nonzero()
# Set ExtBasis vertex data from numpy array
basisFunc = VN.numpy_to_vtk(Esub)
basisFunc.SetName('ExtBasis')
basisFuncSq = VN.numpy_to_vtk(EsubSq)
basisFuncSq.SetName('ExtBasisSq')
vertexData = graph.GetVertexData()
vertexData.AddArray(basisFunc)
vertexData.AddArray(basisFuncSq)
selection = vtk.vtkSelectionSource()
selection.SetContentType(7) # vtkSelection::THRESHOLDS
# selection.SetContentType(2) # vtkSelection::PEDIGREE_IDS
selection.SetFieldType(3) # vtkSelection::VERTEX
selection.SetArrayName("ExtBasisSq")
selection.AddThreshold(basisCutoff, 10)
# TODO: There was something wrong with the indexing in the PEDIGREE_IDS selection...
# for ii in SubIdxs[0]:
# selection.AddID(0,ii)
minmax = "(%3.2e, %3.2e)" % (EsubSq.min(), EsubSq.max())
ui_window.label_basisCutoff_minmax.setText(minmax)
selection.Update()
# ----------
# Back to pipeline
degree = vtk.vtkVertexDegree()
degree.SetInput(graph)
subgraph = vtk.vtkExtractSelectedGraph()
subgraph.SetRemoveIsolatedVertices(False)
subgraph.SetInputConnection(degree.GetOutputPort())
subgraph.SetSelectionConnection(selection.GetOutputPort())
# +++++++++++++
graphToPoly = vtk.vtkGraphToPolyData()
graphToPoly.SetInputConnection(subgraph.GetOutputPort())
edgeMapper = vtk.vtkPolyDataMapper()
edgeMapper.SetInputConnection(graphToPoly.GetOutputPort())
edgeMapper.SetScalarModeToUseCellData()
edgeMapper.SetScalarVisibility(False)
edgeMapper.SetImmediateModeRendering(True)
edgeActor = vtk.vtkActor()
edgeActor.SetMapper(edgeMapper)
edgeActor.SetPosition(0, 0, -0.003);
lut = vtk.vtkLookupTable()
lutNum = 256
lut.SetNumberOfTableValues(lutNum)
ctf = vtk.vtkColorTransferFunction()
ctf.SetColorSpaceToDiverging()
ctf.AddRGBPoint(0.0, 0, 0, 1.0)
ctf.AddRGBPoint(1.0, 1.0, 0, 0)
for ii,ss in enumerate([float(xx)/float(lutNum) for xx in range(lutNum)]):
cc = ctf.GetColor(ss)
lut.SetTableValue(ii,cc[0],cc[1],cc[2],1.0)
vertGlyph = vtk.vtkVertexGlyphFilter()
vertGlyph.SetInputConnection(subgraph.GetOutputPort())
vertMapper = vtk.vtkPolyDataMapper()
vertMapper.SetInputConnection(vertGlyph.GetOutputPort())
vertMapper.SetImmediateModeRendering(True)
vertMapper.SetScalarModeToUsePointFieldData()
vertMapper.SetLookupTable(lut)
vertMapper.SelectColorArray('ExtBasis')
vertMapper.Update()
vertRange = vertMapper.GetInput().GetPointData().GetArray(vertMapper.GetArrayName()).GetRange()
vertMapper.SetScalarRange(-1.0*vertRange[1], vertRange[1])
vertActor = vtk.vtkActor()
vertActor.SetMapper(vertMapper)
outlineMapper = vtk.vtkPolyDataMapper()
outlineMapper.SetScalarVisibility(False)
outlineMapper.SetImmediateModeRendering(True)
outlineMapper.SetInputConnection(vertGlyph.GetOutputPort())
outlineActor = vtk.vtkActor()
outlineActor.PickableOff()
outlineActor.SetPosition(0, 0, -0.001)
outlineActor.GetProperty().SetRepresentationToWireframe()
outlineActor.SetMapper(outlineMapper)
# Create an Actor Collection for applying visibility to group
basisActorCollection = vtk.vtkActorCollection()
basisActorCollection.AddItem(vertActor)
# basisActorCollection.AddItem(edgeActor)
basisActorCollection.AddItem(outlineActor)
# Apply a theme to the views
theme = vtk.vtkViewTheme.CreateMellowTheme()
theme.SetLineWidth(3)
theme.SetPointSize(5)
theme.SetSelectedCellColor(1,1,1)
theme.SetSelectedPointColor(1,1,1)
theme.SetOutlineColor(0.8, 0.8, 0.8)
# theme.SetPointColor(0.9, 0.7, 0.3)
theme.SetCellColor(0.9, 0.7, 0.3)
# theme.SetPointOpacity(0.5)
# theme.SetPointHueRange(0.0, 0.15)
# theme.SetPointSaturationRange(0.6, 0.8)
# theme.SetPointValueRange(0.4,0.8)
# theme.SetPointAlphaRange(0.2,0.8)
# theme.SetPointAlphaRange(1.0,1.0)
# Apply theme
# vertActor.GetProperty().SetColor(theme.GetPointColor())
# vertActor.GetProperty().SetOpacity(theme.GetPointOpacity())
vertActor.GetProperty().SetPointSize(theme.GetPointSize())
outlineActor.GetProperty().SetPointSize(vertActor.GetProperty().GetPointSize()+2)
outlineActor.GetProperty().SetColor(theme.GetOutlineColor())
outlineActor.GetProperty().SetOpacity(theme.GetPointOpacity())
edgeActor.GetProperty().SetColor(theme.GetCellColor())
edgeActor.GetProperty().SetOpacity(theme.GetCellOpacity())
edgeActor.GetProperty().SetLineWidth(theme.GetLineWidth())
# ----------
# Background graph skeleton
graphMapper = vtk.vtkGraphMapper()
graphMapper.SetInputConnection(0, degree.GetOutputPort(0))
# Apply a theme to the background graph
gtheme = vtk.vtkViewTheme()
gtheme.SetLineWidth(1)
gtheme.SetPointSize(0)
gtheme.SetCellColor(0.8, 0.8, 0.8)
gtheme.SetCellOpacity(0.2)
gtheme.SetOutlineColor(0.8, 0.8, 0.8)
gtheme.SetPointColor(0.8, 0.8, 0.8)
gtheme.SetPointOpacity(0.0)
graphMapper.ApplyViewTheme(gtheme)
graphActor = vtk.vtkActor()
graphActor.SetMapper(graphMapper)
graphActor.SetPosition(0,0,-0.005)
# ----------
# Background vertices
graphPoly = vtk.vtkGraphToPolyData()
graphPoly.SetInputConnection(0, tgraph.GetOutputPort(0))
vertGlyph = vtk.vtkGlyph3D()
vertGlyph.SetInputConnection(0, graphPoly.GetOutputPort())
glyphSource = vtk.vtkGlyphSource2D()
glyphSource.SetGlyphTypeToVertex()
# glyphSource.SetGlyphTypeToCircle()
# glyphSource.SetScale(0.025)
vertGlyph.SetInputConnection(1, glyphSource.GetOutputPort())
vertexMapper = vtk.vtkPolyDataMapper()
vertexMapper.SetInputConnection(vertGlyph.GetOutputPort())
vertexActor = vtk.vtkActor()
vertexActor.SetMapper(vertexMapper)
vertexActor.GetProperty().SetPointSize(4)
vertexActor.GetProperty().SetOpacity(0.5)
vertexActor.GetProperty().SetColor(0.6, 0.6, 0.6)
vertexActor.SetPosition(0, 0, -0.004)
# ----------
# Vertex index labels
labelMapper = vtk.vtkDynamic2DLabelMapper()
labelMapper.SetInputConnection(0, graphPoly.GetOutputPort(0))
labelMapper.SetLabelModeToLabelFieldData()
labelMapper.SetFieldDataName("label")
labelMapper.SetLabelFormat("%s")
labelMapper.GetLabelTextProperty().SetColor(0.0, 0.0, 0.0)
labelActor = vtk.vtkActor2D()
labelActor.SetMapper(labelMapper)
# ----------
# MultiScale Graph
msGraph = buildSubGraph(level)
msMapper = vtk.vtkGraphMapper()
msMapper.SetInput(msGraph)
msMapper.SetColorEdges(True)
msMapper.SetEdgeColorArrayName('weight')
# Apply a theme to the background graph
mtheme = vtk.vtkViewTheme()
mtheme.SetLineWidth(3)
mtheme.SetPointSize(11)
# mtheme.SetCellColor(0.5, 0.5, 0.7)
# mtheme.SetCellOpacity(0.5)
mtheme.SetOutlineColor(0.8, 0.8, 0.8)
mtheme.SetPointColor(0.3, 0.3, 0.6)
mtheme.SetPointOpacity(1.0)
mtheme.SetCellHueRange(0.67, 0.67)
mtheme.SetCellSaturationRange(0.6, 0.1)
mtheme.SetCellValueRange(0.5,1.0)
mtheme.SetCellAlphaRange(0.2,0.8)
msMapper.ApplyViewTheme(mtheme)
msActor = vtk.vtkActor()
msActor.SetMapper(msMapper)
msActor.SetPosition(0,0,-0.002)
# ----------
# Set up window and add actors
view.SetLayoutStrategyToPassThrough()
# view.ApplyViewTheme(theme)
# view.SetupRenderWindow(win)
view.GetRenderer().SetBackground(theme.GetBackgroundColor())
view.GetRenderer().SetBackground2(theme.GetBackgroundColor2())
view.GetRenderer().SetGradientBackground(True)
view.GetRenderer().AddActor(vertActor)
view.GetRenderer().AddActor(outlineActor)
view.GetRenderer().AddActor(edgeActor)
view.GetRenderer().AddActor(graphActor)
view.GetRenderer().AddActor(vertexActor)
view.GetRenderer().AddActor(labelActor)
view.GetRenderer().AddActor(msActor)
# ----------
# General interactor
isty = vtk.vtkInteractorStyleRubberBand2D()
# RubberBand2D assumes/needs parallel projection ON
view.GetRenderer().GetActiveCamera().ParallelProjectionOn()
iren = view.GetRenderWindow().GetInteractor()
iren.SetInteractorStyle(isty)
# Interactor style must be set before scalar bar can be shown
# view.SetVertexScalarBarVisibility(True)
sbActor = vtk.vtkScalarBarActor()
sbActor.SetLookupTable(vertMapper.GetLookupTable())
sbActor.SetTitle(vertMapper.GetArrayName())
sbActor.SetNumberOfLabels(3)
vertexScalarBar = vtk.vtkScalarBarWidget()
vertexScalarBar.SetScalarBarActor(sbActor)
vertexScalarBar.SetInteractor(iren)
vertexScalarBar.SetDefaultRenderer(view.GetRenderer())
vertexScalarBar.SetCurrentRenderer(view.GetRenderer())
vertexScalarBar.SetEnabled(True)
scalarBarRep = vertexScalarBar.GetRepresentation()
scalarBarRep.SetOrientation(1) # 0 = Horizontal, 1 = Vertical
scalarBarRep.GetPositionCoordinate().SetValue(0.05,0.05)
scalarBarRep.GetPosition2Coordinate().SetValue(0.15,0.25)
# Adding it this way gets it to show up, but it's not interactive
view.GetRenderer().AddActor(sbActor)
view.ResetCamera()
view.Render()
# ----------
# Add Actors to QListWidget to allow check and uncheck for visibility
listItem0 = QtGui.QListWidgetItem()
listItem0.setText('Index Labels')
listItem0.setFlags(QtCore.Qt.ItemIsUserCheckable | QtCore.Qt.ItemIsEnabled | QtCore.Qt.ItemIsSelectable)
labelActor.SetVisibility(0)
listItem0.setCheckState(QtCore.Qt.Unchecked)
# Put actor it in as data in the list widget item
listItem0.setData(QtCore.Qt.UserRole, QtCore.QVariant(labelActor))
ui_window.listWidget.insertItem(0,listItem0)
# Test retrieval of actor from list widget item
# tmpItem = ui_window.listWidget.item(0)
# tmpQtActor = tmpItem.data(QtCore.Qt.UserRole)
# tmpActor = tmpQtActor.toPyObject()
# tmpActor.SetVisibility(0)
# Shorter way to add item to list widget
listItem1 = QtGui.QListWidgetItem('Vertices (background)', ui_window.listWidget)
listItem1.setData(QtCore.Qt.UserRole, QtCore.QVariant(vertexActor))
listItem1.setFlags(QtCore.Qt.ItemIsUserCheckable | QtCore.Qt.ItemIsEnabled | QtCore.Qt.ItemIsSelectable)
listItem1.setCheckState(QtCore.Qt.Checked)
listItem2 = QtGui.QListWidgetItem('Graph (background)', ui_window.listWidget)
listItem2.setData(QtCore.Qt.UserRole, QtCore.QVariant(graphActor))
listItem2.setFlags(QtCore.Qt.ItemIsUserCheckable | QtCore.Qt.ItemIsEnabled | QtCore.Qt.ItemIsSelectable)
listItem2.setCheckState(QtCore.Qt.Checked)
listItem3 = QtGui.QListWidgetItem()
listItem3.setText('Basis Function Vertices')
listItem3.setData(QtCore.Qt.UserRole, QtCore.QVariant(basisActorCollection))
listItem3.setFlags(QtCore.Qt.ItemIsUserCheckable | QtCore.Qt.ItemIsEnabled | QtCore.Qt.ItemIsSelectable)
listItem3.setCheckState(QtCore.Qt.Checked)
ui_window.listWidget.insertItem(1,listItem3)
listItem6 = QtGui.QListWidgetItem()
listItem6.setText('Basis Function Edges')
listItem6.setData(QtCore.Qt.UserRole, QtCore.QVariant(edgeActor))
listItem6.setFlags(QtCore.Qt.ItemIsUserCheckable | QtCore.Qt.ItemIsEnabled | QtCore.Qt.ItemIsSelectable)
listItem6.setCheckState(QtCore.Qt.Checked)
ui_window.listWidget.insertItem(2,listItem6)
listItem4 = QtGui.QListWidgetItem()
listItem4.setText('MultiScale Graph')
listItem4.setData(QtCore.Qt.UserRole, QtCore.QVariant(msActor))
listItem4.setFlags(QtCore.Qt.ItemIsUserCheckable | QtCore.Qt.ItemIsEnabled | QtCore.Qt.ItemIsSelectable)
listItem4.setCheckState(QtCore.Qt.Checked)
ui_window.listWidget.insertItem(3,listItem4)
listItem5 = QtGui.QListWidgetItem()
listItem5.setText('Basis Function Scale Bar')
listItem5.setData(QtCore.Qt.UserRole, QtCore.QVariant(sbActor))
listItem5.setFlags(QtCore.Qt.ItemIsUserCheckable | QtCore.Qt.ItemIsEnabled | QtCore.Qt.ItemIsSelectable)
listItem5.setCheckState(QtCore.Qt.Checked)
ui_window.listWidget.insertItem(3,listItem5)
iren.Initialize()
iren.Start()
def main():
img_reader = ImageReaderFactory().GenerateImageReader("png")
img_reader.SetFileName("./kitti/image_00/000000.png")
img_actor = ImageActor(img_reader.GetOutputPort())
sphereSource = vtk.vtkSphereSource()
sphereSource.SetRadius(4.0)
sphereSource.Update()
mapper = vtk.vtkPolyDataMapper()
mapper.SetInputConnection(sphereSource.GetOutputPort())
actor = vtk.vtkActor()
actor.SetMapper(mapper)
renderer = vtk.vtkRenderer()
renderWindow = vtk.vtkRenderWindow()
renderWindow.AddRenderer(renderer)
interactor = vtk.vtkRenderWindowInteractor()
interactor.SetRenderWindow(renderWindow)
borderWidget = vtk.vtkBorderWidget()
borderWidget.SetInteractor(interactor)
representation = vtk.vtkBorderRepresentation()
representation.SetPosition(0, 0)
representation.SetPosition2(0.1, 0.1)
borderWidget.SetRepresentation(representation)
# borderWidget.CreateDefaultRepresentation()
borderWidget.SelectableOff()
borderWidget.On()
print(representation)
style = vtk.vtkInteractorStyleRubberBand2D()
def gen(style, event):
size = renderWindow.GetSize()
start = list(style.GetStartPosition())
end = list(style.GetEndPosition())
new_start = [start[0], end[1]]
new_end = [end[0], start[1]]
print("start,end: ", start, end)
print("new_start,new_end: ", new_start, new_end)
tmp = [new_start[0] / size[0], new_start[1] / size[1]]
print("scaled bottom_left: ", tmp)
print("scaled top_right: ", new_end[0] / size[0], new_end[1] / size[1])
representation = vtk.vtkBorderRepresentation()
borderWidget = vtk.vtkBorderWidget()
representation.SetPosition(tmp[0], tmp[1])
representation.SetPosition2(new_end[0] / size[0] - tmp[0],
new_end[1] / size[1] - tmp[1])
representation.SetMoving(0)
print("Moving status: ", representation.GetMoving())
borderWidget.SetRepresentation(representation)
borderWidget.SetInteractor(interactor)
borderWidget.ResizableOn()
# borderWidget.CreateDefaultRepresentation()
# borderWidget.SelectableO()
borderWidget.On()
renderWindow.Render()
widgets.append(borderWidget)
# def stylecallback(style, event):
# size = renderWindow.GetSize()
# start = list(style.GetStartPosition())
# end = list(style.GetEndPosition())
# new_start = [start[0], end[1]]
# new_end = [end[0], start[1]]
# print("start,end: ", start, end)
# print("new_start,new_end: ", new_start, new_end)
# tmp = [new_start[0] / size[0], new_start[1] / size[1]]
# print("scaled bottom_left: ", tmp)
# print("scaled top_right: ", new_end[0] / size[0], new_end[1] / size[1])
# r = vtk.vtkBorderRepresentation()
# # representation.MovingOff()
# borderWidget = vtk.vtkBorderWidget()
# # representation.ResizableOff()
# # representation = vtk.vtkBorderRepresentation()
# # representation
# borderWidget.SelectableOff()
# # global Flag
# # if Flag:
# # borderWidget.SelectableOn()
# # Flag = False
# # else:
# # borderWidget.SelectableOff()
# # Flag = True
# # representation.SetPosition(tmp[0], tmp[1])
# # representation.SetPosition2(
# # new_end[0] / size[0] - tmp[0], new_end[1] / size[1] - tmp[1])
# # representation.SetMoving(1)
# # print("Moving status: ", representation.GetMoving())
# # borderWidget.CreateDefaultRepresentation()
# # r = borderWidget.GetBorderRepresentation()
# r.MovingOff()
# r.SetPosition(tmp[0], tmp[1])
# r.SetPosition2(
# new_end[0] / size[0] - tmp[0], new_end[1] / size[1] - tmp[1])
# r.SetMoving(1)
# r.BuildRepresentation()
# borderWidget.SetRepresentation(r)
# borderWidget.SetInteractor(interactor)
# # borderWidget.ResizableOff()
# # borderWidget.CreateDefaultRepresentation()
# # borderWidget.SelectableOn()
# borderWidget.On()
# print(r)
# renderWindow.Render()
# widgets.append(borderWidget)
# style.AddObserver("SelectionChangedEvent", stylecallback)
interactor.SetInteractorStyle(style)
renderer.AddActor(actor)
renderer.AddActor(img_actor.actor)
interactor.Initialize()
renderWindow.Render()
# borderWidget.On()
interactor.Start()