Python GeneProf.search_genes Beispiele

Beispiel #1

Datei: test_geneprof.py Projekt: schryer/bioservices

def test_1():
    g = GeneProf(verbose=False)
    g.get_list_reference_datasets()

    g.get_list_experiment_samples("mouse")
    g.get_list_experiment_samples("human", frmt="txt")
    g.get_list_experiment_samples("human", frmt="rdata")

    g.search_genes("sox2")
    g.search_genes("sox2", taxons="9606")
    g.search_genes("sox2", taxons="9606, 10090")
    res = g.search_genes("brca2 AND cancer AND reference", taxons="mouse")

Beispiel #2

Datei: test_geneprof.py Projekt: cxhernandez/bioservices

def test_1():
    g = GeneProf(verbose=False)
    g.get_list_reference_datasets()

    g.get_list_experiment_samples("mouse")
    g.get_list_experiment_samples("human", frmt="txt")
    g.get_list_experiment_samples("human", frmt="rdata")

    g.search_genes("sox2")
    g.search_genes("sox2", taxons="9606")
    g.search_genes("sox2", taxons="9606, 10090")
    res = g.search_genes("brca2 AND cancer AND reference", taxons="mouse")