Python GeneProf.search_genes示例

示例#1

文件： test_geneprof.py 项目： schryer/bioservices

def test_1():
    g = GeneProf(verbose=False)
    g.get_list_reference_datasets()

    g.get_list_experiment_samples("mouse")
    g.get_list_experiment_samples("human", frmt="txt")
    g.get_list_experiment_samples("human", frmt="rdata")

    g.search_genes("sox2")
    g.search_genes("sox2", taxons="9606")
    g.search_genes("sox2", taxons="9606, 10090")
    res = g.search_genes("brca2 AND cancer AND reference", taxons="mouse")

示例#2

文件： test_geneprof.py 项目： cxhernandez/bioservices

def test_1():
    g = GeneProf(verbose=False)
    g.get_list_reference_datasets()

    g.get_list_experiment_samples("mouse")
    g.get_list_experiment_samples("human", frmt="txt")
    g.get_list_experiment_samples("human", frmt="rdata")

    g.search_genes("sox2")
    g.search_genes("sox2", taxons="9606")
    g.search_genes("sox2", taxons="9606, 10090")
    res = g.search_genes("brca2 AND cancer AND reference", taxons="mouse")