def updateAllTrackInfoToVersion15():
from quick.application.GalaxyInterface import GalaxyInterface
from gold.origdata.PreProcessUtils import PreProcessUtils
for genomeTuple in GalaxyInterface.getAllGenomes():
genome = genomeTuple[1]
updateGenomeTrackInfoToVersion15(genome)
def getDictOfAllGenomes(self):
return OrderedDict([(x[0], False) for x in GalaxyInterface.getAllGenomes(self.galaxy.getUserName())])
def _getAllGenomes(self):
return [("----- Select -----", "", False)] + GalaxyInterface.getAllGenomes(self.galaxy.getUserName())
def __init__(self, trans, job):
BaseToolController.__init__(self, trans, job)
self.genomes = GalaxyInterface.getAllGenomes(self.galaxy.getUserName() \
if hasattr(self, 'galaxy') else '')
self.genome = self.params.get('dbkey', '')
def __init__(self, trans, job):
BaseToolController.__init__(self, trans, job)
self.genomes = GalaxyInterface.getAllGenomes(self.galaxy.getUserName() \
if hasattr(self, 'galaxy') else '')
self.genome = self.params.get('dbkey', self.genomes[0][1])
def _getAllGenomes(self):
return [('----- Select -----', '', False)] + GalaxyInterface.getAllGenomes(self.galaxy.getUserName())
