Example #1
0
def updateAllTrackInfoToVersion15():
    from quick.application.GalaxyInterface import GalaxyInterface
    from gold.origdata.PreProcessUtils import PreProcessUtils

    for genomeTuple in GalaxyInterface.getAllGenomes():
        genome = genomeTuple[1]
        updateGenomeTrackInfoToVersion15(genome)
 def getDictOfAllGenomes(self):
     return OrderedDict([(x[0], False) for x in GalaxyInterface.getAllGenomes(self.galaxy.getUserName())])
 def _getAllGenomes(self):
     return [("----- Select -----", "", False)] + GalaxyInterface.getAllGenomes(self.galaxy.getUserName())
 def __init__(self, trans, job):
     BaseToolController.__init__(self, trans, job)
     self.genomes = GalaxyInterface.getAllGenomes(self.galaxy.getUserName() \
                                                  if hasattr(self, 'galaxy') else '')
     self.genome = self.params.get('dbkey', '')
 def __init__(self, trans, job):
     BaseToolController.__init__(self, trans, job)
     self.genomes = GalaxyInterface.getAllGenomes(self.galaxy.getUserName() \
                                                  if hasattr(self, 'galaxy') else '')
     self.genome = self.params.get('dbkey', self.genomes[0][1])
Example #6
0
 def _getAllGenomes(self):
     return [('----- Select -----', '', False)] + GalaxyInterface.getAllGenomes(self.galaxy.getUserName())