def updateAllTrackInfoToVersion15(): from quick.application.GalaxyInterface import GalaxyInterface from gold.origdata.PreProcessUtils import PreProcessUtils for genomeTuple in GalaxyInterface.getAllGenomes(): genome = genomeTuple[1] updateGenomeTrackInfoToVersion15(genome)
def getDictOfAllGenomes(self): return OrderedDict([(x[0], False) for x in GalaxyInterface.getAllGenomes(self.galaxy.getUserName())])
def _getAllGenomes(self): return [("----- Select -----", "", False)] + GalaxyInterface.getAllGenomes(self.galaxy.getUserName())
def __init__(self, trans, job): BaseToolController.__init__(self, trans, job) self.genomes = GalaxyInterface.getAllGenomes(self.galaxy.getUserName() \ if hasattr(self, 'galaxy') else '') self.genome = self.params.get('dbkey', '')
def __init__(self, trans, job): BaseToolController.__init__(self, trans, job) self.genomes = GalaxyInterface.getAllGenomes(self.galaxy.getUserName() \ if hasattr(self, 'galaxy') else '') self.genome = self.params.get('dbkey', self.genomes[0][1])
def _getAllGenomes(self): return [('----- Select -----', '', False)] + GalaxyInterface.getAllGenomes(self.galaxy.getUserName())