class HmmscanOutput2align( object ): ## constructor # def __init__(self): self.hmmscanOutputProcess = HmmscanOutputProcessing() self._inputFile = "" self._outputFile = "" ## set input file # # @param input file input file # def setInputFile(self, input): self._inputFile = input ## set output file # @param output file output file # def setOutputFile(self, output): self._outputFile = output ##read a hmmscan output file, parse it and, write the corresponding .align file # def run( self ): self.hmmscanOutputProcess.readHmmOutputsAndWriteAlignFile( self._inputFile, self._outputFile )
def __init__(self): self.hmmscanOutputProcess = HmmscanOutputProcessing() self._inputFile = "" self._outputFile = ""