def buildExperimentLevelReadQuality(infiles, outfile): """Collate per sequence read qualities for all replicates per experiment. Replicates are the last part of a filename, eg. Experiment-R1, Experiment-R2, etc. """ PipelineReadqc.buildExperimentReadQuality(infiles, outfile, "fastqc.dir")
def buildExperimentLevelReadQuality(infiles, outfile): """ Collate per sequence read qualities for all replicates per experiment. Replicates are the last part of a filename, eg. Experiment-R1, Experiment-R2, etc. """ exportdir = os.path.join(PARAMS["exportdir"], "fastqc") PipelineReadqc.buildExperimentReadQuality(infiles, outfile, exportdir)
def buildExperimentLevelReadQuality(infiles, outfile): """ Collate per sequence read qualities for all replicates per experiment. Replicates are the last part of a filename, eg. Experiment-R1, Experiment-R2, etc. """ exportdir = os.path.join(PARAMS["exportdir"], "fastqc") PipelineReadqc.buildExperimentReadQuality(infiles, outfile, exportdir)