def buildExperimentLevelReadQuality(infiles, outfile):
"""Collate per sequence read qualities for all replicates per
experiment. Replicates are the last part of a filename,
eg. Experiment-R1, Experiment-R2, etc.
"""
PipelineReadqc.buildExperimentReadQuality(infiles, outfile, "fastqc.dir")
def buildExperimentLevelReadQuality(infiles, outfile):
"""
Collate per sequence read qualities for all replicates per experiment.
Replicates are the last part of a filename, eg. Experiment-R1,
Experiment-R2, etc.
"""
exportdir = os.path.join(PARAMS["exportdir"], "fastqc")
PipelineReadqc.buildExperimentReadQuality(infiles, outfile, exportdir)
def buildExperimentLevelReadQuality(infiles, outfile):
"""
Collate per sequence read qualities for all replicates per experiment.
Replicates are the last part of a filename, eg. Experiment-R1,
Experiment-R2, etc.
"""
exportdir = os.path.join(PARAMS["exportdir"], "fastqc")
PipelineReadqc.buildExperimentReadQuality(infiles, outfile, exportdir)
